Wall clock time and date at job start Tue Mar 31 2020 14:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.99570 * 2 1 4 4 C 1.54315 * 109.88156 * 238.90519 * 2 1 3 5 5 H 1.09005 * 110.72207 * 336.75541 * 4 2 1 6 6 N 1.46497 * 110.72358 * 100.02690 * 4 2 1 7 7 C 1.36937 * 120.00614 * 199.98091 * 6 4 2 8 8 H 1.08004 * 119.99731 * 359.97438 * 7 6 4 9 9 C 1.38807 * 120.00477 * 180.02562 * 7 6 4 10 10 N 1.31626 * 119.99782 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00506 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46947 * 59.99182 * 11 9 7 13 13 H 1.48495 * 109.47423 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46928 * 299.99992 * 11 9 7 15 15 C 1.55156 * 102.94436 * 218.38969 * 4 2 1 16 16 C 1.54906 * 101.61451 * 35.48113 * 15 4 2 17 17 N 1.47017 * 109.88216 * 121.09352 * 2 1 3 18 18 C 1.34776 * 125.65312 * 298.41902 * 17 2 1 19 19 O 1.21494 * 119.99954 * 359.97438 * 18 17 2 20 20 C 1.48331 * 120.00159 * 180.02562 * 18 17 2 21 21 C 1.42271 * 126.93725 * 179.97438 * 20 18 17 22 22 C 1.35316 * 103.92245 * 179.97438 * 21 20 18 23 23 C 1.50695 * 126.66859 * 180.02562 * 22 21 20 24 24 N 1.46900 * 109.47482 * 89.99869 * 23 22 21 25 25 C 1.46896 * 111.00104 * 66.04755 * 24 23 22 26 26 C 1.46904 * 111.00329 * 190.00301 * 24 23 22 27 27 O 1.34020 * 106.66717 * 0.02562 * 22 21 20 28 28 N 1.20904 * 111.84610 * 359.70264 * 27 22 21 29 29 H 1.09001 * 109.47001 * 181.09759 * 1 2 3 30 30 H 1.09003 * 109.47113 * 301.09344 * 1 2 3 31 31 H 1.09000 * 109.46955 * 61.08928 * 1 2 3 32 32 H 0.97005 * 119.99905 * 19.97312 * 6 4 2 33 33 H 0.97006 * 120.00022 * 180.02562 * 10 9 7 34 34 H 1.09002 * 111.00677 * 153.57697 * 15 4 2 35 35 H 1.09002 * 111.00564 * 277.38955 * 15 4 2 36 36 H 1.09008 * 110.36753 * 81.85112 * 16 15 4 37 37 H 1.09001 * 110.37094 * 204.16995 * 16 15 4 38 38 H 1.07996 * 128.04345 * 0.02562 * 21 20 18 39 39 H 1.09005 * 109.47343 * 210.00185 * 23 22 21 40 40 H 1.09004 * 109.47235 * 329.99826 * 23 22 21 41 41 H 1.08999 * 109.47074 * 59.99831 * 25 24 23 42 42 H 1.09003 * 109.47263 * 180.02562 * 25 24 23 43 43 H 1.09007 * 109.46987 * 300.00454 * 25 24 23 44 44 H 1.08999 * 109.47050 * 59.99511 * 26 24 23 45 45 H 1.08996 * 109.47211 * 179.97438 * 26 24 23 46 46 H 1.09001 * 109.46794 * 300.00110 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3051 -1.4459 -1.6182 6 7 2.4555 0.1961 -2.2875 7 6 2.5574 -0.2225 -3.5873 8 1 2.3429 -1.2498 -3.8422 9 6 2.9376 0.6733 -4.5772 10 7 3.1995 1.9253 -4.2664 11 14 3.0773 0.1022 -6.3502 12 1 1.7603 -0.4053 -6.8120 13 1 3.4960 1.2415 -7.2057 14 1 4.0862 -0.9836 -6.4424 15 6 3.2876 -1.5142 -0.6924 16 6 2.8156 -1.8794 0.7371 17 7 2.0300 -0.7140 1.1839 18 6 1.8071 -0.3623 2.4657 19 8 1.1417 0.6224 2.7185 20 6 2.3749 -1.1766 3.5678 21 6 2.2341 -0.9426 4.9640 22 6 2.9282 -1.9539 5.5353 23 6 3.1123 -2.1980 7.0109 24 7 2.0266 -3.0555 7.5048 25 6 2.1073 -4.3988 6.9157 26 6 2.0349 -3.1229 8.9722 27 8 3.4200 -2.6964 4.5339 28 7 3.1028 -2.2595 3.4521 29 1 -0.3633 -1.0275 0.0197 30 1 -0.3633 0.5307 0.8800 31 1 -0.3633 0.4968 -0.8996 32 1 2.6485 1.1187 -2.0585 33 1 3.4648 2.5514 -4.9582 34 1 3.4852 -2.4110 -1.2797 35 1 4.1656 -0.8690 -0.6610 36 1 2.1900 -2.7718 0.7137 37 1 3.6731 -2.0334 1.3921 38 1 1.6972 -0.1439 5.4541 39 1 4.0700 -2.6901 7.1811 40 1 3.0936 -1.2462 7.5418 41 1 3.0610 -4.8550 7.1807 42 1 1.2917 -5.0127 7.2979 43 1 2.0287 -4.3251 5.8309 44 1 1.9037 -2.1216 9.3826 45 1 1.2209 -3.7636 9.3111 46 1 2.9860 -3.5329 9.3117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986455546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:40 Heat of formation + Delta-G solvation = 39.734116 kcal Electronic energy + Delta-G solvation = -27336.068385 eV Core-core repulsion = 23457.282454 eV Total energy + Delta-G solvation = -3878.785931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.20952 -41.35189 -38.96180 -38.48258 -36.02237 -35.16907 -33.74940 -33.10535 -32.32866 -30.86360 -28.54082 -28.32761 -26.92689 -26.24543 -24.83357 -24.13110 -23.45540 -22.65673 -21.63320 -20.13964 -19.15421 -19.00120 -18.46278 -18.05939 -17.41701 -16.64298 -16.42622 -16.22450 -16.16992 -15.83417 -15.52859 -15.44738 -14.88559 -14.79117 -14.63013 -14.19677 -13.86196 -13.70924 -13.54246 -13.34981 -13.20488 -13.06049 -12.94281 -12.74400 -12.66154 -12.62065 -12.52463 -12.29921 -12.24027 -12.12985 -11.75481 -11.68044 -11.54722 -11.38039 -10.92277 -10.63055 -9.88621 -9.36719 -9.06037 -7.94930 -5.25710 -0.02159 0.58331 1.48323 1.51746 1.54575 1.58230 1.91842 1.96988 2.56047 2.73884 3.08329 3.28648 3.37603 3.59994 3.65472 3.85066 3.90728 3.99834 4.09357 4.13092 4.24196 4.30562 4.32981 4.41005 4.43793 4.57308 4.58974 4.60175 4.69896 4.76230 4.79745 4.85404 4.87139 4.96007 5.04912 5.13019 5.13180 5.14981 5.21715 5.35874 5.52636 5.91526 6.00930 6.23240 6.26336 6.72054 6.99903 7.31346 8.01424 8.26418 9.28163 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.033076 B = 0.002357 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.322409 B =11879.129591 C =12240.954970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.133 3.867 3 H 0.055 0.945 4 C 0.174 3.826 5 H 0.074 0.926 6 N -0.727 5.727 7 C -0.239 4.239 8 H 0.083 0.917 9 C -0.076 4.076 10 N -0.970 5.970 11 Si 0.976 3.024 12 H -0.277 1.277 13 H -0.299 1.299 14 H -0.276 1.276 15 C -0.146 4.146 16 C 0.109 3.891 17 N -0.595 5.595 18 C 0.603 3.397 19 O -0.557 6.557 20 C -0.042 4.042 21 C -0.168 4.168 22 C -0.014 4.014 23 C 0.137 3.863 24 N -0.562 5.562 25 C 0.019 3.981 26 C 0.025 3.975 27 O 0.129 5.871 28 N -0.335 5.335 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.372 0.628 33 H 0.251 0.749 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.191 0.809 39 H 0.081 0.919 40 H 0.133 0.867 41 H 0.043 0.957 42 H 0.078 0.922 43 H 0.050 0.950 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.251 -14.014 28.087 31.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.073 0.927 4 C 0.064 3.936 5 H 0.092 0.908 6 N -0.367 5.367 7 C -0.370 4.370 8 H 0.101 0.899 9 C -0.268 4.268 10 N -0.621 5.621 11 Si 0.804 3.196 12 H -0.203 1.203 13 H -0.226 1.226 14 H -0.202 1.202 15 C -0.187 4.187 16 C -0.013 4.013 17 N -0.328 5.328 18 C 0.391 3.609 19 O -0.435 6.435 20 C -0.199 4.199 21 C -0.191 4.191 22 C -0.077 4.077 23 C 0.009 3.991 24 N -0.287 5.287 25 C -0.129 4.129 26 C -0.122 4.122 27 O 0.051 5.949 28 N -0.034 5.034 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.204 0.796 33 H 0.059 0.941 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.208 0.792 39 H 0.099 0.901 40 H 0.151 0.849 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.660 -14.025 26.863 30.311 hybrid contribution 0.569 0.777 -0.606 1.138 sum -0.091 -13.248 26.257 29.410 Atomic orbital electron populations 1.21953 0.93507 1.02558 1.02250 1.21753 0.95382 0.95603 0.84336 0.92708 1.21397 0.94706 0.91102 0.86398 0.90826 1.42482 1.81319 1.09239 1.03612 1.19568 1.37302 0.95431 0.84724 0.89888 1.25606 1.03025 0.95866 1.02295 1.69833 1.54533 1.04196 1.33488 0.85183 0.78111 0.76557 0.79709 1.20267 1.22599 1.20192 1.23413 0.99312 1.01523 0.94435 1.22563 0.95605 0.87491 0.95633 1.48459 1.51188 1.28957 1.04209 1.16846 0.80007 0.83388 0.80670 1.90752 1.41386 1.27864 1.83455 1.23281 1.03958 0.96779 0.95917 1.22562 1.03621 1.02946 0.89970 1.24696 0.97581 0.91684 0.93749 1.20776 0.94673 1.01347 0.82340 1.61956 1.45003 1.12540 1.09211 1.22464 1.01658 0.89116 0.99627 1.22447 1.01614 1.03662 0.84443 1.84766 1.55547 1.44488 1.10119 1.74269 1.13695 1.11272 1.04153 0.91395 0.92520 0.91463 0.79580 0.94061 0.88988 0.92511 0.89688 0.89161 0.79214 0.90058 0.84908 0.93822 0.90344 0.93076 0.89989 0.90559 0.94068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 9.09 71.98 0.65 -4.34 16 2 C 0.13 4.99 3.21 45.34 0.15 5.14 16 3 H 0.05 2.35 7.69 -2.39 -0.02 2.33 16 4 C 0.17 6.84 3.12 46.18 0.14 6.98 16 5 H 0.07 2.81 7.83 -2.38 -0.02 2.79 16 6 N -0.73 -36.34 5.25 -317.34 -1.67 -38.01 16 7 C -0.24 -12.90 9.98 84.03 0.84 -12.06 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 10 N -0.97 -59.46 13.06 21.65 0.28 -59.18 16 11 Si 0.98 45.62 29.55 68.60 2.03 47.65 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 14 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 15 C -0.15 -5.00 6.77 31.98 0.22 -4.78 16 16 C 0.11 3.23 6.17 86.85 0.54 3.77 16 17 N -0.60 -20.28 3.07 -790.78 -2.42 -22.70 16 18 C 0.60 20.91 7.67 86.93 0.67 21.57 16 19 O -0.56 -22.10 16.00 -3.70 -0.06 -22.16 16 20 C -0.04 -1.19 7.02 42.96 0.30 -0.89 16 21 C -0.17 -3.62 10.92 22.60 0.25 -3.37 16 22 C -0.01 -0.22 6.03 25.01 0.15 -0.07 16 23 C 0.14 1.22 5.52 85.56 0.47 1.69 16 24 N -0.56 -5.81 5.01 -953.46 -4.78 -10.59 16 25 C 0.02 0.20 9.37 127.69 1.20 1.40 16 26 C 0.03 0.14 9.57 127.69 1.22 1.36 16 27 O 0.13 2.62 10.61 71.84 0.76 3.38 16 28 N -0.33 -8.56 9.31 -49.51 -0.46 -9.02 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.06 2.02 6.90 -2.39 -0.02 2.00 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.37 20.46 7.51 -92.70 -0.70 19.76 16 33 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 34 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.08 2.23 8.14 -2.38 -0.02 2.22 16 37 H 0.09 2.57 6.24 -2.39 -0.01 2.55 16 38 H 0.19 3.59 8.06 -2.91 -0.02 3.57 16 39 H 0.08 0.47 8.12 -2.38 -0.02 0.45 16 40 H 0.13 0.65 8.06 -2.38 -0.02 0.63 16 41 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.08 0.72 8.12 -2.39 -0.02 0.70 16 43 H 0.05 0.72 6.83 -2.38 -0.02 0.71 16 44 H 0.08 0.31 8.12 -2.39 -0.02 0.29 16 45 H 0.08 0.40 8.12 -2.39 -0.02 0.38 16 46 H 0.04 0.15 8.14 -2.39 -0.02 0.13 16 Total: -1.00 -69.51 377.84 1.23 -68.28 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.29 Total: 29.77 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 7.26 Total: 12.58 kcal Atomic # 7 Polarization: -130.45 SS G_CDS: -9.04 Total: -139.49 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.70 Total: -18.78 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -69.51 1.23 -68.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986455546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.011 kcal (2) G-P(sol) polarization free energy of solvation -69.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds