Wall clock time and date at job start Tue Mar 31 2020 14:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.99828 * 2 1 4 4 C 1.54333 * 109.99135 * 238.96686 * 2 1 3 5 5 H 1.08993 * 110.85415 * 100.19801 * 4 2 1 6 6 N 1.46501 * 110.66659 * 337.04270 * 4 2 1 7 7 C 1.36940 * 119.99848 * 97.24929 * 6 4 2 8 8 H 1.08006 * 119.99660 * 359.97438 * 7 6 4 9 9 C 1.38809 * 120.00385 * 179.97438 * 7 6 4 10 10 N 1.31621 * 119.99433 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00228 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47233 * 90.00360 * 11 9 7 13 13 H 1.48501 * 109.47175 * 210.00142 * 11 9 7 14 14 H 1.48498 * 109.47253 * 330.00250 * 11 9 7 15 15 C 1.55158 * 103.01803 * 218.66591 * 4 2 1 16 16 C 1.54909 * 101.58575 * 35.30537 * 15 4 2 17 17 N 1.47022 * 109.88321 * 121.09851 * 2 1 3 18 18 C 1.34778 * 125.64892 * 298.39306 * 17 2 1 19 19 O 1.21496 * 119.99701 * 359.71981 * 18 17 2 20 20 C 1.48322 * 120.00443 * 179.71484 * 18 17 2 21 21 C 1.42269 * 126.94309 * 179.70864 * 20 18 17 22 22 C 1.35317 * 103.92424 * 179.91283 * 21 20 18 23 23 C 1.50699 * 126.66410 * 180.11329 * 22 21 20 24 24 N 1.46897 * 109.47456 * 90.26294 * 23 22 21 25 25 C 1.46899 * 111.00153 * 66.04074 * 24 23 22 26 26 C 1.46895 * 111.00122 * 189.99662 * 24 23 22 27 27 O 1.34017 * 106.66671 * 0.35072 * 22 21 20 28 28 N 1.20906 * 111.84407 * 359.76074 * 27 22 21 29 29 H 1.08996 * 109.46979 * 304.34760 * 1 2 3 30 30 H 1.09002 * 109.46994 * 64.35459 * 1 2 3 31 31 H 1.08996 * 109.46712 * 184.35193 * 1 2 3 32 32 H 0.96993 * 120.00490 * 277.24541 * 6 4 2 33 33 H 0.97003 * 119.99470 * 179.97438 * 10 9 7 34 34 H 1.09001 * 111.00529 * 277.22824 * 15 4 2 35 35 H 1.09008 * 111.03565 * 153.39544 * 15 4 2 36 36 H 1.08996 * 110.36965 * 204.15247 * 16 15 4 37 37 H 1.08998 * 110.36381 * 81.82878 * 16 15 4 38 38 H 1.08006 * 128.03818 * 0.02562 * 21 20 18 39 39 H 1.09004 * 109.46893 * 210.25926 * 23 22 21 40 40 H 1.08996 * 109.47424 * 330.25346 * 23 22 21 41 41 H 1.09003 * 109.47084 * 60.00075 * 25 24 23 42 42 H 1.09004 * 109.47343 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.47353 * 300.00244 * 25 24 23 44 44 H 1.09005 * 109.46924 * 59.99931 * 26 24 23 45 45 H 1.09006 * 109.47107 * 179.97438 * 26 24 23 46 46 H 1.08998 * 109.47207 * 299.99772 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7477 -1.2427 5 1 2.3598 -0.0449 -2.0191 6 7 1.0483 -1.6788 -1.7532 7 6 0.2390 -1.3082 -2.7938 8 1 0.3445 -0.3293 -3.2378 9 6 -0.7171 -2.1905 -3.2779 10 7 -0.8459 -3.3831 -2.7363 11 14 -1.8216 -1.6846 -4.6969 12 1 -1.1811 -2.0631 -5.9820 13 1 -3.1313 -2.3738 -4.5748 14 1 -2.0305 -0.2148 -4.6619 15 6 3.2864 -1.5183 -0.6915 16 6 2.8100 -1.8825 0.7368 17 7 2.0301 -0.7141 1.1839 18 6 1.8075 -0.3621 2.4657 19 8 1.1464 0.6254 2.7184 20 6 2.3694 -1.1804 3.5678 21 6 2.2326 -0.9437 4.9640 22 6 2.9172 -1.9615 5.5354 23 6 3.0991 -2.2071 7.0111 24 7 2.0088 -3.0595 7.5037 25 6 2.0833 -4.4029 6.9140 26 6 2.0157 -3.1276 8.9711 27 8 3.4065 -2.7057 4.5340 28 7 3.0968 -2.2635 3.4521 29 1 -0.3633 0.5798 0.8484 30 1 -0.3633 0.4448 -0.9265 31 1 -0.3632 -1.0247 0.0780 32 1 0.9533 -2.5577 -1.3542 33 1 -1.5143 -3.9996 -3.0744 34 1 4.1670 -0.8768 -0.6579 35 1 3.4814 -2.4155 -1.2790 36 1 3.6656 -2.0412 1.3932 37 1 2.1803 -2.7718 0.7113 38 1 1.7035 -0.1397 5.4540 39 1 4.0541 -2.7040 7.1817 40 1 3.0847 -1.2555 7.5423 41 1 3.0346 -4.8640 7.1795 42 1 1.2644 -5.0130 7.2954 43 1 2.0058 -4.3284 5.8294 44 1 1.8891 -2.1258 9.3819 45 1 1.1983 -3.7645 9.3091 46 1 2.9646 -3.5425 9.3111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986455547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:44 Heat of formation + Delta-G solvation = 65.000131 kcal Electronic energy + Delta-G solvation = -27784.317571 eV Core-core repulsion = 23906.627257 eV Total energy + Delta-G solvation = -3877.690314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.13937 -39.81880 -37.94559 -37.45020 -34.21425 -33.86197 -32.62582 -31.38588 -30.67333 -28.85559 -27.99432 -27.72077 -25.25019 -24.82220 -23.34514 -23.16910 -22.46844 -21.56327 -19.80646 -18.51847 -17.96415 -17.46226 -17.37135 -16.64958 -15.85623 -15.72658 -15.63821 -15.10813 -14.83306 -14.58280 -13.95412 -13.84535 -13.58675 -13.49507 -13.17588 -12.85987 -12.79074 -12.63553 -12.57414 -12.45379 -12.16370 -12.03686 -11.64930 -11.43336 -11.22573 -10.87066 -10.86611 -10.62715 -10.44820 -10.41402 -10.18281 -10.04655 -9.85671 -9.70777 -9.63384 -8.96773 -8.86751 -8.28665 -7.04268 -5.81466 -3.11107 1.08720 1.61031 2.73672 3.08143 3.37310 3.41625 3.47558 3.48769 3.61231 3.97475 4.22154 4.55096 4.62629 4.78125 4.80993 4.96464 4.97942 5.05107 5.10202 5.20629 5.21135 5.33083 5.36405 5.44329 5.46526 5.62596 5.63196 5.71549 5.78437 5.82802 6.01252 6.10838 6.23585 6.35613 6.41531 6.43156 6.48148 6.59457 6.66987 6.81928 7.01104 7.33450 7.66083 7.77820 7.94558 8.33611 8.36025 9.47754 10.01597 10.36999 11.40543 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020559 B = 0.002772 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.617410 B =10099.917459 C =10432.434332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.108 3.892 3 H 0.063 0.937 4 C 0.171 3.829 5 H 0.078 0.922 6 N -0.708 5.708 7 C -0.241 4.241 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.906 3.094 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.281 1.281 15 C -0.146 4.146 16 C 0.102 3.898 17 N -0.587 5.587 18 C 0.604 3.396 19 O -0.531 6.531 20 C -0.015 4.015 21 C -0.158 4.158 22 C -0.039 4.039 23 C 0.138 3.862 24 N -0.545 5.545 25 C 0.019 3.981 26 C 0.025 3.975 27 O 0.115 5.885 28 N -0.323 5.323 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.385 0.615 33 H 0.256 0.744 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.180 0.820 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.032 0.968 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.378 0.621 21.527 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.003 3.997 3 H 0.082 0.918 4 C 0.058 3.942 5 H 0.096 0.904 6 N -0.347 5.347 7 C -0.372 4.372 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.737 3.263 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.185 4.185 16 C -0.021 4.021 17 N -0.320 5.320 18 C 0.389 3.611 19 O -0.407 6.407 20 C -0.174 4.174 21 C -0.181 4.181 22 C -0.102 4.102 23 C 0.010 3.990 24 N -0.270 5.270 25 C -0.129 4.129 26 C -0.123 4.123 27 O 0.041 5.959 28 N -0.025 5.025 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.220 0.780 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.197 0.803 39 H 0.080 0.920 40 H 0.128 0.872 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 10.876 0.780 20.310 23.052 hybrid contribution -0.388 -0.026 0.121 0.408 sum 10.488 0.753 20.431 22.978 Atomic orbital electron populations 1.21772 0.93463 1.02925 1.00983 1.22859 0.96371 0.95485 0.84962 0.91849 1.21261 0.88537 0.92286 0.92109 0.90447 1.42344 1.38518 1.15153 1.38692 1.19203 1.11038 0.99144 1.07785 0.90996 1.24736 0.99765 0.96241 0.99822 1.69662 1.37285 1.07023 1.43738 0.86213 0.80165 0.77665 0.82272 1.21724 1.21824 1.20689 1.23188 0.98522 1.01858 0.94967 1.22460 0.95233 0.88411 0.95981 1.48491 1.50779 1.28171 1.04522 1.16489 0.80532 0.83654 0.80413 1.90765 1.40183 1.26745 1.82973 1.23604 1.02137 0.95915 0.95792 1.22382 1.02708 1.01745 0.91265 1.24124 1.00204 0.93135 0.92771 1.20504 0.93747 0.99888 0.84884 1.61964 1.44436 1.12829 1.07728 1.22488 1.00786 0.88675 1.00948 1.22401 1.00913 1.02843 0.86105 1.84792 1.56539 1.44481 1.10129 1.74300 1.13922 1.11379 1.02889 0.94108 0.91135 0.91566 0.78043 0.93444 0.91113 0.89366 0.90248 0.91105 0.80303 0.92047 0.87177 0.94921 0.90813 0.91071 0.90904 0.90746 0.95190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.08 37.16 0.30 -2.54 16 2 C 0.11 2.07 3.43 -66.94 -0.23 1.84 16 3 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 4 C 0.17 3.27 3.53 -66.09 -0.23 3.04 16 5 H 0.08 1.45 8.05 -51.93 -0.42 1.03 16 6 N -0.71 -16.72 3.81 -51.65 -0.20 -16.92 16 7 C -0.24 -6.33 8.62 -15.06 -0.13 -6.46 16 8 H 0.07 1.84 7.82 -52.48 -0.41 1.43 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 11 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 C -0.15 -2.33 6.70 -24.58 -0.16 -2.50 16 16 C 0.10 1.68 6.11 -2.53 -0.02 1.67 16 17 N -0.59 -10.70 3.06 -163.94 -0.50 -11.21 16 18 C 0.60 11.22 7.67 -12.11 -0.09 11.13 16 19 O -0.53 -11.03 16.06 5.37 0.09 -10.95 16 20 C -0.02 -0.24 7.02 -82.53 -0.58 -0.82 16 21 C -0.16 -1.99 10.92 -39.08 -0.43 -2.41 16 22 C -0.04 -0.41 6.03 -35.35 -0.21 -0.62 16 23 C 0.14 0.96 5.52 -4.98 -0.03 0.93 16 24 N -0.54 -4.20 5.01 -252.72 -1.27 -5.46 16 25 C 0.02 0.15 9.37 60.06 0.56 0.71 16 26 C 0.03 0.13 9.57 60.06 0.57 0.70 16 27 O 0.12 1.41 10.61 17.24 0.18 1.60 16 28 N -0.32 -4.75 9.30 33.29 0.31 -4.44 16 29 H 0.04 0.86 7.01 -51.93 -0.36 0.50 16 30 H 0.07 1.55 7.32 -51.93 -0.38 1.17 16 31 H 0.07 1.59 7.55 -51.93 -0.39 1.19 16 32 H 0.39 9.87 7.85 -40.82 -0.32 9.54 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.42 8.14 -51.92 -0.42 1.00 16 36 H 0.08 1.21 6.24 -51.93 -0.32 0.89 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.18 1.99 8.06 -52.48 -0.42 1.57 16 39 H 0.06 0.34 8.12 -51.93 -0.42 -0.08 16 40 H 0.11 0.55 8.06 -51.93 -0.42 0.13 16 41 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 43 H 0.07 0.68 6.83 -51.93 -0.35 0.33 16 44 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 45 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 46 H 0.03 0.13 8.14 -51.93 -0.42 -0.30 16 LS Contribution 374.30 15.07 5.64 5.64 Total: -1.00 -31.56 374.30 -7.98 -39.54 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.16 Total: 7.53 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -0.77 Total: 4.32 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -0.93 Total: -64.68 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.27 Total: -9.35 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.56 -7.98 -39.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986455547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.540 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds