Wall clock time and date at job start Tue Mar 31 2020 14:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99909 * 2 1 4 4 C 1.53000 * 109.46857 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46817 * 180.02562 * 4 3 2 6 6 C 1.35042 * 124.88568 * 125.00162 * 5 4 3 7 7 C 1.35360 * 107.22719 * 180.02562 * 6 5 4 8 8 C 1.41500 * 105.50537 * 359.97438 * 7 6 5 9 9 C 1.47708 * 126.51628 * 179.97438 * 8 7 6 10 10 O 1.21572 * 120.00440 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00128 * 180.02562 * 9 8 7 12 12 C 1.47431 * 125.64579 * 0.03909 * 11 9 8 13 13 C 1.55392 * 104.87127 * 204.10006 * 12 11 9 14 14 C 1.55157 * 101.36576 * 323.01456 * 13 12 11 15 15 H 1.09002 * 110.72219 * 277.04408 * 14 13 12 16 16 N 1.46505 * 110.71610 * 153.94856 * 14 13 12 17 17 C 1.36930 * 119.99608 * 88.84878 * 16 14 13 18 18 H 1.08002 * 120.00527 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99561 * 179.97438 * 17 16 14 20 20 N 1.31623 * 119.99798 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00213 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46987 * 90.00062 * 21 19 17 23 23 H 1.48497 * 109.47362 * 210.00207 * 21 19 17 24 24 H 1.48493 * 109.47020 * 330.00278 * 21 19 17 25 25 C 1.47019 * 125.65277 * 180.02562 * 11 9 8 26 26 H 1.09001 * 109.88251 * 59.55144 * 25 11 9 27 27 C 1.53002 * 110.01220 * 298.46729 * 25 11 9 28 28 N 1.28468 * 124.88733 * 305.32567 * 5 4 3 29 29 H 1.09005 * 109.47059 * 59.99619 * 1 2 3 30 30 H 1.09000 * 109.47319 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46913 * 300.00359 * 1 2 3 32 32 H 1.09000 * 109.47042 * 59.99745 * 3 2 1 33 33 H 1.09001 * 109.47104 * 299.99951 * 3 2 1 34 34 H 1.08994 * 109.47239 * 59.99983 * 4 3 2 35 35 H 1.09001 * 109.47074 * 299.99787 * 4 3 2 36 36 H 1.07993 * 126.38049 * 0.05166 * 6 5 4 37 37 H 1.08006 * 127.24477 * 180.02562 * 7 6 5 38 38 H 1.08999 * 110.36190 * 322.93058 * 12 11 9 39 39 H 1.08998 * 110.36491 * 85.14737 * 12 11 9 40 40 H 1.09004 * 111.18705 * 204.97719 * 13 12 11 41 41 H 1.09001 * 111.02055 * 80.98222 * 13 12 11 42 42 H 0.96995 * 119.99603 * 268.83481 * 16 14 13 43 43 H 0.97004 * 119.99478 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.46658 * 302.11206 * 27 25 11 45 45 H 1.09001 * 109.47565 * 62.10530 * 27 25 11 46 46 H 1.08993 * 109.47396 * 182.11474 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0263 2.9696 0.9073 7 6 5.3351 4.2441 0.5720 8 6 4.5723 4.5260 -0.5860 9 6 4.5568 5.7957 -1.3406 10 8 5.2480 6.7274 -0.9772 11 7 3.7754 5.9217 -2.4316 12 6 2.8904 4.8778 -2.9797 13 6 2.7219 5.2452 -4.4801 14 6 2.6780 6.7947 -4.4125 15 1 1.6744 7.1417 -4.1666 16 7 3.1325 7.3817 -5.6755 17 6 2.2349 7.6203 -6.6817 18 1 1.1920 7.3755 -6.5444 19 6 2.6655 8.1770 -7.8782 20 7 1.8028 8.4059 -8.8456 21 14 4.4691 8.6011 -8.1155 22 1 5.1812 7.4317 -8.6905 23 1 4.5884 9.7570 -9.0401 24 1 5.0717 8.9519 -6.8044 25 6 3.6644 7.1229 -3.2720 26 1 4.6399 7.3766 -3.6868 27 6 3.1311 8.2938 -2.4439 28 7 3.8732 3.4426 -0.8591 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6439 -0.8908 35 1 3.8575 0.6436 0.8891 36 1 5.4220 2.4133 1.7441 37 1 6.0203 4.9061 1.0807 38 1 3.3541 3.8964 -2.8796 39 1 1.9254 4.8942 -2.4731 40 1 1.7909 4.8450 -4.8816 41 1 3.5763 4.9037 -5.0646 42 1 4.0692 7.6014 -5.7988 43 1 2.1036 8.7953 -9.6815 44 1 2.1641 8.0265 -2.0176 45 1 3.8323 8.5199 -1.6406 46 1 3.0167 9.1688 -3.0836 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986542969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:27 Heat of formation + Delta-G solvation = 30.984269 kcal Electronic energy + Delta-G solvation = -27516.103493 eV Core-core repulsion = 23636.938140 eV Total energy + Delta-G solvation = -3879.165353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.88642 -39.77398 -38.47368 -37.37202 -34.37383 -34.14685 -31.83806 -31.03451 -30.79804 -29.98588 -29.21797 -26.83752 -25.28720 -24.78683 -23.05345 -22.63871 -21.79565 -21.23250 -20.16748 -19.07275 -17.74263 -17.55507 -17.00564 -16.72455 -16.50018 -16.03379 -15.98756 -15.09516 -14.92858 -14.51854 -14.14626 -14.09969 -13.85333 -13.52692 -13.32077 -13.27738 -12.77436 -12.69322 -12.51502 -12.24374 -12.15679 -11.95230 -11.87597 -11.78693 -11.33369 -11.16158 -10.95150 -10.76636 -10.57747 -10.29515 -10.25250 -10.03874 -9.84484 -9.60681 -9.47200 -9.28715 -8.93585 -8.38909 -7.31247 -5.80052 -3.16781 1.45889 1.93339 1.99492 3.09523 3.33401 3.38271 3.42401 3.46312 3.49397 4.02617 4.32327 4.43930 4.53980 4.57592 4.64925 4.81751 4.85619 4.93282 5.04921 5.10050 5.13857 5.21607 5.24368 5.31560 5.46424 5.52719 5.56761 5.60937 5.66728 5.79176 5.89811 5.98523 6.06502 6.21278 6.30727 6.40764 6.44005 6.53619 6.57603 6.59382 6.71950 6.86166 7.62931 7.76104 7.94601 8.33407 8.38643 9.15682 9.88373 10.07192 11.37802 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014483 B = 0.003095 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.897768 B = 9045.243525 C =10319.740844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.286 5.286 6 C -0.016 4.016 7 C -0.179 4.179 8 C -0.003 4.003 9 C 0.613 3.387 10 O -0.537 6.537 11 N -0.596 5.596 12 C 0.103 3.897 13 C -0.155 4.155 14 C 0.181 3.819 15 H 0.074 0.926 16 N -0.739 5.739 17 C -0.246 4.246 18 H 0.092 0.908 19 C 0.008 3.992 20 N -0.932 5.932 21 Si 0.882 3.118 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.275 1.275 25 C 0.125 3.875 26 H 0.075 0.925 27 C -0.155 4.155 28 N -0.256 5.256 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.182 0.818 37 H 0.163 0.837 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.363 0.637 43 H 0.260 0.740 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 -17.438 22.823 28.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.076 5.076 6 C -0.158 4.158 7 C -0.206 4.206 8 C -0.164 4.164 9 C 0.399 3.601 10 O -0.413 6.413 11 N -0.328 5.328 12 C -0.021 4.021 13 C -0.196 4.196 14 C 0.070 3.930 15 H 0.092 0.908 16 N -0.381 5.381 17 C -0.375 4.375 18 H 0.110 0.890 19 C -0.188 4.188 20 N -0.579 5.579 21 Si 0.712 3.288 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.201 1.201 25 C 0.021 3.979 26 H 0.093 0.907 27 C -0.214 4.214 28 N -0.091 5.091 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.199 0.801 37 H 0.181 0.819 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.196 0.804 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.941 -17.623 22.157 28.326 hybrid contribution 1.598 0.680 0.287 1.760 sum 2.539 -16.944 22.444 28.236 Atomic orbital electron populations 1.22805 0.79664 1.03211 1.00615 1.87768 1.20801 1.26646 1.95648 1.22649 0.92075 0.85653 1.02454 1.21663 0.93135 0.78571 1.06160 1.45412 1.31254 1.11507 1.19399 1.22862 0.98094 0.96565 0.98329 1.21783 1.04612 0.95967 0.98289 1.21987 1.01165 0.93983 0.99220 1.16512 0.79422 0.85015 0.79141 1.90774 1.42879 1.39549 1.68119 1.48348 1.42255 1.15862 1.26382 1.22585 0.93444 0.91636 0.94390 1.23623 1.02856 0.99913 0.93220 1.21230 0.95835 0.91039 0.84891 0.90767 1.42706 1.07539 1.75372 1.12496 1.19030 0.91841 1.34963 0.91697 0.89009 1.24654 0.97102 1.00798 0.96245 1.69700 1.33027 1.49498 1.05663 0.86588 0.86502 0.78105 0.77615 1.21035 1.21659 1.20145 1.21951 1.00371 0.84520 0.91021 0.90677 1.22059 1.00837 0.97982 1.00478 1.73664 1.22552 0.97688 1.15239 0.93366 0.89100 0.93795 0.92504 0.91048 0.87847 0.87046 0.80083 0.81948 0.89624 0.91902 0.90176 0.90857 0.80380 0.92980 0.92817 0.91828 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.92 10.70 -35.23 -0.38 -3.30 16 3 C 0.05 0.34 6.04 37.16 0.22 0.57 16 4 C 0.13 0.76 6.77 -4.04 -0.03 0.74 16 5 N -0.29 -2.61 3.41 -61.33 -0.21 -2.82 16 6 C -0.02 -0.13 11.40 -17.17 -0.20 -0.33 16 7 C -0.18 -2.01 10.81 -39.37 -0.43 -2.43 16 8 C 0.00 -0.04 6.97 -82.77 -0.58 -0.62 16 9 C 0.61 10.31 7.65 -12.39 -0.09 10.21 16 10 O -0.54 -10.35 15.97 5.30 0.08 -10.26 16 11 N -0.60 -9.76 3.07 -163.86 -0.50 -10.26 16 12 C 0.10 1.49 6.16 -2.26 -0.01 1.47 16 13 C -0.16 -2.59 6.80 -24.32 -0.17 -2.75 16 14 C 0.18 3.44 3.11 -66.09 -0.21 3.24 16 15 H 0.07 1.43 7.82 -51.93 -0.41 1.02 16 16 N -0.74 -17.19 5.04 -51.65 -0.26 -17.45 16 17 C -0.25 -6.75 10.45 -15.06 -0.16 -6.90 16 18 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 19 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 20 N -0.93 -28.89 13.97 55.49 0.78 -28.11 16 21 Si 0.88 22.08 27.74 -169.99 -4.71 17.37 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 24 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 25 C 0.12 2.22 3.20 -66.95 -0.21 2.00 16 26 H 0.08 1.44 7.70 -51.93 -0.40 1.04 16 27 C -0.16 -2.59 9.10 37.16 0.34 -2.25 16 28 N -0.26 -3.13 8.78 33.42 0.29 -2.83 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.11 0.38 8.04 -51.93 -0.42 -0.03 16 36 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.16 1.66 8.06 -52.48 -0.42 1.24 16 38 H 0.09 1.19 6.21 -51.93 -0.32 0.87 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.36 8.47 5.40 -40.82 -0.22 8.25 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 1.09 6.90 -51.93 -0.36 0.73 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 378.44 15.07 5.70 5.70 Total: -1.00 -34.26 378.44 -6.91 -41.17 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.21 Total: 6.41 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -0.50 Total: 4.38 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 0.10 Total: -61.47 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.29 Total: -13.56 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.26 -6.91 -41.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986542969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.159 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds