Wall clock time and date at job start Tue Mar 31 2020 14:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99903 * 2 1 4 4 C 1.52996 * 109.46926 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47219 * 180.02562 * 4 3 2 6 6 C 1.35036 * 124.88619 * 124.99972 * 5 4 3 7 7 C 1.35361 * 107.23052 * 180.02562 * 6 5 4 8 8 C 1.41508 * 105.50163 * 359.97438 * 7 6 5 9 9 C 1.47714 * 126.51617 * 179.97438 * 8 7 6 10 10 O 1.21569 * 119.99988 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99567 * 180.02562 * 9 8 7 12 12 C 1.47415 * 125.64930 * 359.97438 * 11 9 8 13 13 C 1.54914 * 104.83137 * 155.90975 * 12 11 9 14 14 C 1.55150 * 101.58287 * 37.00822 * 13 12 11 15 15 H 1.09002 * 110.72232 * 83.03512 * 14 13 12 16 16 N 1.46496 * 110.72288 * 206.13858 * 14 13 12 17 17 C 1.36945 * 119.99718 * 271.15689 * 16 14 13 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 14 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47317 * 125.61141 * 180.20271 * 11 9 8 26 26 H 1.08999 * 109.85011 * 300.42122 * 25 11 9 27 27 C 1.53000 * 110.06331 * 61.68042 * 25 11 9 28 28 N 1.28474 * 124.88375 * 305.32943 * 5 4 3 29 29 H 1.08994 * 109.46997 * 59.99644 * 1 2 3 30 30 H 1.09001 * 109.47358 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46763 * 300.00102 * 1 2 3 32 32 H 1.09004 * 109.46989 * 60.00094 * 3 2 1 33 33 H 1.08996 * 109.47494 * 299.99981 * 3 2 1 34 34 H 1.08995 * 109.47431 * 60.00180 * 4 3 2 35 35 H 1.09009 * 109.47282 * 300.00185 * 4 3 2 36 36 H 1.07998 * 126.38243 * 0.02562 * 6 5 4 37 37 H 1.08002 * 127.25258 * 179.97438 * 7 6 5 38 38 H 1.08998 * 110.37011 * 37.06929 * 12 11 9 39 39 H 1.09005 * 110.36901 * 274.74489 * 12 11 9 40 40 H 1.09000 * 111.00302 * 278.92926 * 13 12 11 41 41 H 1.08997 * 111.03783 * 155.09854 * 13 12 11 42 42 H 0.96996 * 120.00499 * 91.15419 * 16 14 13 43 43 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.47261 * 177.73245 * 27 25 11 45 45 H 1.08998 * 109.47194 * 297.72913 * 27 25 11 46 46 H 1.08997 * 109.47302 * 57.72920 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0255 2.9698 0.9091 7 6 5.3348 4.2442 0.5736 8 6 4.5729 4.5258 -0.5851 9 6 4.5580 5.7952 -1.3403 10 8 5.2497 6.7267 -0.9771 11 7 3.7776 5.9207 -2.4320 12 6 2.8940 4.8762 -2.9811 13 6 1.8121 5.6496 -3.7757 14 6 2.6425 6.8104 -4.3840 15 1 3.1449 6.4884 -5.2963 16 7 1.7923 7.9742 -4.6458 17 6 1.1505 8.0965 -5.8494 18 1 1.2716 7.3350 -6.6056 19 6 0.3445 9.1990 -6.0973 20 7 0.1974 10.1272 -5.1758 21 14 -0.5303 9.3661 -7.7393 22 1 -1.3229 10.6218 -7.7524 23 1 0.4730 9.4020 -8.8334 24 1 -1.4372 8.2069 -7.9372 25 6 3.6704 7.1232 -3.2762 26 1 3.3253 7.9661 -2.6776 27 6 5.0282 7.4474 -3.9026 28 7 3.8739 3.4423 -0.8584 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8574 0.6436 -0.8891 35 1 3.8567 0.6438 0.8909 36 1 5.4203 2.4140 1.7468 37 1 6.0189 4.9067 1.0830 38 1 2.4358 4.3042 -2.1744 39 1 3.4532 4.2167 -3.6449 40 1 1.0367 6.0303 -3.1109 41 1 1.3808 5.0257 -4.5585 42 1 1.6839 8.6583 -3.9668 43 1 -0.3656 10.8979 -5.3492 44 1 4.9291 8.3140 -4.5564 45 1 5.7486 7.6672 -3.1148 46 1 5.3741 6.5921 -4.4830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986542970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:30 Heat of formation + Delta-G solvation = 26.805495 kcal Electronic energy + Delta-G solvation = -27468.962639 eV Core-core repulsion = 23589.616081 eV Total energy + Delta-G solvation = -3879.346558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.82920 -39.65182 -38.43486 -37.24790 -34.29695 -34.02094 -31.76133 -30.88573 -30.72470 -29.81035 -28.87687 -26.78931 -25.12827 -24.71372 -23.10730 -22.79970 -21.76238 -21.16628 -20.01484 -18.95642 -17.68049 -17.19753 -16.97028 -16.61738 -16.39071 -16.14412 -15.61862 -15.24821 -14.74618 -14.51184 -14.23116 -13.82815 -13.66231 -13.54374 -13.28842 -13.19397 -12.84071 -12.64611 -12.46557 -12.12859 -12.02858 -11.84982 -11.76306 -11.60823 -11.16701 -10.98491 -10.86861 -10.68556 -10.51855 -10.22358 -10.21643 -9.99845 -9.79779 -9.64938 -9.41774 -9.23015 -8.90366 -8.28433 -6.99726 -5.78777 -3.08972 1.52113 1.97826 2.05929 3.17942 3.38802 3.43165 3.47905 3.48824 3.57146 4.06897 4.36294 4.50198 4.57330 4.58797 4.68898 4.87268 4.90090 4.98520 5.13818 5.18586 5.23570 5.26096 5.34423 5.46491 5.52245 5.61402 5.64772 5.70465 5.79731 5.91119 6.04524 6.16228 6.20086 6.28720 6.40524 6.48071 6.53584 6.58884 6.66250 6.68927 6.83842 6.98923 7.67722 7.69938 7.85775 8.38352 8.43046 9.50007 10.05125 10.40126 11.43420 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012892 B = 0.003108 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.340858 B = 9005.789454 C =10778.403663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.049 3.951 4 C 0.126 3.874 5 N -0.287 5.287 6 C -0.017 4.017 7 C -0.179 4.179 8 C -0.002 4.002 9 C 0.611 3.389 10 O -0.537 6.537 11 N -0.595 5.595 12 C 0.104 3.896 13 C -0.157 4.157 14 C 0.176 3.824 15 H 0.066 0.934 16 N -0.715 5.715 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.931 5.931 21 Si 0.908 3.092 22 H -0.291 1.291 23 H -0.285 1.285 24 H -0.286 1.286 25 C 0.128 3.872 26 H 0.079 0.921 27 C -0.154 4.154 28 N -0.256 5.256 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.182 0.818 37 H 0.163 0.837 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.386 0.614 43 H 0.257 0.743 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.424 -21.633 13.312 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.029 4.029 4 C 0.005 3.995 5 N -0.077 5.077 6 C -0.159 4.159 7 C -0.207 4.207 8 C -0.162 4.162 9 C 0.398 3.602 10 O -0.413 6.413 11 N -0.328 5.328 12 C -0.019 4.019 13 C -0.198 4.198 14 C 0.065 3.935 15 H 0.084 0.916 16 N -0.355 5.355 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.212 1.212 24 H -0.213 1.213 25 C 0.024 3.976 26 H 0.097 0.903 27 C -0.212 4.212 28 N -0.092 5.092 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.199 0.801 37 H 0.181 0.819 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.027 -21.838 12.628 25.936 hybrid contribution -0.291 0.706 -0.008 0.764 sum 5.736 -21.131 12.621 25.273 Atomic orbital electron populations 1.22805 0.79657 1.03166 1.00687 1.87759 1.20808 1.26667 1.95661 1.22656 0.92090 0.85639 1.02515 1.21648 0.93110 0.78619 1.06075 1.45412 1.31280 1.11451 1.19520 1.22853 0.98142 0.96605 0.98315 1.21789 1.04668 0.95934 0.98270 1.22034 1.00995 0.93981 0.99238 1.16515 0.79669 0.84919 0.79123 1.90773 1.42846 1.39405 1.68312 1.48446 1.42258 1.16188 1.25932 1.22474 0.91358 0.90272 0.97822 1.23582 0.97611 0.99053 0.99562 1.21248 0.89669 0.88595 0.94026 0.91633 1.42345 1.53969 1.22023 1.17171 1.19169 1.21373 1.04589 0.92251 0.91056 1.24757 1.00722 0.97127 0.98066 1.69660 1.42886 1.11753 1.33529 0.86257 0.79396 0.76923 0.83516 1.21707 1.21196 1.21252 1.22011 0.96738 0.86980 0.91851 0.90288 1.22039 0.96576 1.01750 1.00839 1.73672 1.22270 0.97739 1.15510 0.93356 0.89128 0.93752 0.92462 0.91057 0.87916 0.87080 0.80118 0.81943 0.89880 0.92043 0.90847 0.90721 0.77989 0.93353 0.91032 0.91936 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.09 10.70 -35.23 -0.38 -3.47 16 3 C 0.05 0.37 6.04 37.16 0.22 0.59 16 4 C 0.13 0.81 6.77 -4.04 -0.03 0.79 16 5 N -0.29 -2.75 3.41 -61.33 -0.21 -2.96 16 6 C -0.02 -0.15 11.40 -17.17 -0.20 -0.34 16 7 C -0.18 -2.10 10.81 -39.36 -0.43 -2.53 16 8 C 0.00 -0.03 6.97 -82.76 -0.58 -0.60 16 9 C 0.61 10.77 7.65 -12.39 -0.09 10.68 16 10 O -0.54 -10.79 16.00 5.30 0.08 -10.71 16 11 N -0.60 -10.26 3.08 -163.95 -0.50 -10.77 16 12 C 0.10 1.59 6.16 -2.53 -0.02 1.57 16 13 C -0.16 -2.73 6.77 -24.58 -0.17 -2.90 16 14 C 0.18 3.51 3.12 -66.10 -0.21 3.30 16 15 H 0.07 1.30 7.81 -51.93 -0.41 0.90 16 16 N -0.71 -17.67 5.24 -51.66 -0.27 -17.94 16 17 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.13 2.39 3.22 -66.79 -0.21 2.18 16 26 H 0.08 1.64 7.70 -51.93 -0.40 1.24 16 27 C -0.15 -2.70 9.11 37.16 0.34 -2.36 16 28 N -0.26 -3.28 8.77 33.42 0.29 -2.99 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.62 8.08 -51.93 -0.42 0.21 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.11 0.42 8.04 -51.92 -0.42 0.00 16 36 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.08 1.20 6.19 -51.93 -0.32 0.88 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.39 10.28 7.53 -40.82 -0.31 9.97 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.06 1.12 6.93 -51.93 -0.36 0.76 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 381.58 15.07 5.75 5.75 Total: -1.00 -33.37 381.58 -7.28 -40.64 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.25 Total: 7.98 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.49 Total: 4.55 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: 0.03 Total: -61.81 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.29 Total: -14.17 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.37 -7.28 -40.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986542970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.450 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds