Wall clock time and date at job start Tue Mar 31 2020 14:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99903 * 2 1 4 4 C 1.52996 * 109.46926 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47219 * 180.02562 * 4 3 2 6 6 C 1.35036 * 124.88619 * 124.99972 * 5 4 3 7 7 C 1.35361 * 107.23052 * 180.02562 * 6 5 4 8 8 C 1.41508 * 105.50163 * 359.97438 * 7 6 5 9 9 C 1.47714 * 126.51617 * 179.97438 * 8 7 6 10 10 O 1.21569 * 119.99988 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99567 * 180.02562 * 9 8 7 12 12 C 1.47415 * 125.64930 * 359.97438 * 11 9 8 13 13 C 1.54914 * 104.83137 * 155.90975 * 12 11 9 14 14 C 1.55150 * 101.58287 * 37.00822 * 13 12 11 15 15 H 1.09002 * 110.72232 * 83.03512 * 14 13 12 16 16 N 1.46496 * 110.72288 * 206.13858 * 14 13 12 17 17 C 1.36945 * 119.99718 * 271.15689 * 16 14 13 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 14 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47317 * 125.61141 * 180.20271 * 11 9 8 26 26 H 1.08999 * 109.85011 * 300.42122 * 25 11 9 27 27 C 1.53000 * 110.06331 * 61.68042 * 25 11 9 28 28 N 1.28474 * 124.88375 * 305.32943 * 5 4 3 29 29 H 1.08994 * 109.46997 * 59.99644 * 1 2 3 30 30 H 1.09001 * 109.47358 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46763 * 300.00102 * 1 2 3 32 32 H 1.09004 * 109.46989 * 60.00094 * 3 2 1 33 33 H 1.08996 * 109.47494 * 299.99981 * 3 2 1 34 34 H 1.08995 * 109.47431 * 60.00180 * 4 3 2 35 35 H 1.09009 * 109.47282 * 300.00185 * 4 3 2 36 36 H 1.07998 * 126.38243 * 0.02562 * 6 5 4 37 37 H 1.08002 * 127.25258 * 179.97438 * 7 6 5 38 38 H 1.08998 * 110.37011 * 37.06929 * 12 11 9 39 39 H 1.09005 * 110.36901 * 274.74489 * 12 11 9 40 40 H 1.09000 * 111.00302 * 278.92926 * 13 12 11 41 41 H 1.08997 * 111.03783 * 155.09854 * 13 12 11 42 42 H 0.96996 * 120.00499 * 91.15419 * 16 14 13 43 43 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.47261 * 177.73245 * 27 25 11 45 45 H 1.08998 * 109.47194 * 297.72913 * 27 25 11 46 46 H 1.08997 * 109.47302 * 57.72920 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0255 2.9698 0.9091 7 6 5.3348 4.2442 0.5736 8 6 4.5729 4.5258 -0.5851 9 6 4.5580 5.7952 -1.3403 10 8 5.2497 6.7267 -0.9771 11 7 3.7776 5.9207 -2.4320 12 6 2.8940 4.8762 -2.9811 13 6 1.8121 5.6496 -3.7757 14 6 2.6425 6.8104 -4.3840 15 1 3.1449 6.4884 -5.2963 16 7 1.7923 7.9742 -4.6458 17 6 1.1505 8.0965 -5.8494 18 1 1.2716 7.3350 -6.6056 19 6 0.3445 9.1990 -6.0973 20 7 0.1974 10.1272 -5.1758 21 14 -0.5303 9.3661 -7.7393 22 1 -1.3229 10.6218 -7.7524 23 1 0.4730 9.4020 -8.8334 24 1 -1.4372 8.2069 -7.9372 25 6 3.6704 7.1232 -3.2762 26 1 3.3253 7.9661 -2.6776 27 6 5.0282 7.4474 -3.9026 28 7 3.8739 3.4423 -0.8584 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8574 0.6436 -0.8891 35 1 3.8567 0.6438 0.8909 36 1 5.4203 2.4140 1.7468 37 1 6.0189 4.9067 1.0830 38 1 2.4358 4.3042 -2.1744 39 1 3.4532 4.2167 -3.6449 40 1 1.0367 6.0303 -3.1109 41 1 1.3808 5.0257 -4.5585 42 1 1.6839 8.6583 -3.9668 43 1 -0.3656 10.8979 -5.3492 44 1 4.9291 8.3140 -4.5564 45 1 5.7486 7.6672 -3.1148 46 1 5.3741 6.5921 -4.4830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986542970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:29 Heat of formation + Delta-G solvation = 3.833009 kcal Electronic energy + Delta-G solvation = -27469.958800 eV Core-core repulsion = 23589.616081 eV Total energy + Delta-G solvation = -3880.342720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.67412 -41.06129 -39.00891 -38.71978 -35.93198 -34.98224 -33.42262 -32.35212 -31.72436 -30.97581 -30.14136 -27.36135 -26.86586 -25.68582 -24.79243 -23.85958 -22.77629 -22.09773 -21.52679 -20.18562 -19.13807 -18.48386 -17.98168 -17.48469 -17.36899 -17.02362 -16.62768 -16.45583 -16.23955 -15.56140 -15.48103 -15.32397 -14.90029 -14.69603 -14.55607 -14.26022 -14.11498 -13.96564 -13.61083 -13.33364 -13.16788 -12.98553 -12.91752 -12.67868 -12.57750 -12.56127 -12.31630 -12.21164 -12.12464 -11.83355 -11.71178 -11.49692 -11.16931 -10.88145 -10.76554 -10.27868 -10.09358 -9.67070 -9.03003 -7.93133 -5.23663 0.50018 1.17661 1.33505 1.49666 1.52774 1.58631 1.92055 2.34410 2.58056 2.78199 3.30750 3.39914 3.60988 3.73665 3.79933 3.84882 3.97923 4.00474 4.13294 4.18847 4.23638 4.33690 4.40334 4.46367 4.49692 4.51637 4.64209 4.66478 4.68584 4.73445 4.75974 4.81560 4.85367 4.94351 5.03635 5.19122 5.20666 5.24474 5.39704 5.46388 5.54700 5.84799 6.02322 6.26608 6.47316 6.80776 7.11869 7.33154 8.04217 8.29226 9.30212 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012892 B = 0.003108 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.340858 B = 9005.789454 C =10778.403663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.051 3.949 4 C 0.123 3.877 5 N -0.278 5.278 6 C 0.012 3.988 7 C -0.201 4.201 8 C -0.036 4.036 9 C 0.606 3.394 10 O -0.574 6.574 11 N -0.599 5.599 12 C 0.118 3.882 13 C -0.147 4.147 14 C 0.173 3.827 15 H 0.072 0.928 16 N -0.728 5.728 17 C -0.239 4.239 18 H 0.083 0.917 19 C -0.075 4.075 20 N -0.971 5.971 21 Si 0.975 3.025 22 H -0.299 1.299 23 H -0.277 1.277 24 H -0.275 1.275 25 C 0.132 3.868 26 H 0.049 0.951 27 C -0.143 4.143 28 N -0.268 5.268 29 H 0.044 0.956 30 H 0.105 0.895 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.111 0.889 35 H 0.149 0.851 36 H 0.232 0.768 37 H 0.164 0.836 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.089 0.911 42 H 0.371 0.629 43 H 0.251 0.749 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.867 -25.232 13.723 29.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.027 4.027 4 C 0.004 3.996 5 N -0.068 5.068 6 C -0.130 4.130 7 C -0.229 4.229 8 C -0.195 4.195 9 C 0.395 3.605 10 O -0.452 6.452 11 N -0.331 5.331 12 C -0.005 4.005 13 C -0.188 4.188 14 C 0.063 3.937 15 H 0.090 0.910 16 N -0.367 5.367 17 C -0.371 4.371 18 H 0.101 0.899 19 C -0.267 4.267 20 N -0.622 5.622 21 Si 0.804 3.196 22 H -0.226 1.226 23 H -0.203 1.203 24 H -0.201 1.201 25 C 0.028 3.972 26 H 0.068 0.932 27 C -0.201 4.201 28 N -0.105 5.105 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.129 0.871 35 H 0.166 0.834 36 H 0.249 0.751 37 H 0.182 0.818 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.108 0.892 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.481 -25.512 13.025 29.368 hybrid contribution -0.408 1.672 -0.037 1.721 sum 6.073 -23.840 12.989 27.819 Atomic orbital electron populations 1.22957 0.78879 1.04263 1.00808 1.87739 1.21726 1.26691 1.95667 1.22593 0.92951 0.85489 1.01668 1.21969 0.92179 0.77070 1.08366 1.45755 1.30689 1.11707 1.18632 1.23497 0.95991 0.95350 0.98150 1.21995 1.05277 0.97710 0.97941 1.21703 1.03580 0.93492 1.00690 1.17015 0.78824 0.85832 0.78837 1.90734 1.44295 1.41031 1.69163 1.48488 1.42699 1.15880 1.26020 1.22460 0.90413 0.89560 0.98060 1.23409 0.97421 0.98251 0.99685 1.21401 0.89713 0.87816 0.94726 0.90966 1.42501 1.54729 1.23165 1.16302 1.19596 1.20283 1.04285 0.92926 0.89903 1.25587 1.02326 0.97244 1.01523 1.69836 1.44260 1.12431 1.35642 0.85191 0.78272 0.76574 0.79582 1.22603 1.20306 1.20129 1.21763 0.96941 0.87016 0.91457 0.93237 1.21926 0.95677 1.02063 1.00459 1.73557 1.22340 0.97875 1.16735 0.93710 0.87622 0.93196 0.92523 0.92814 0.87125 0.83361 0.75144 0.81817 0.88736 0.90198 0.92722 0.89243 0.79665 0.94074 0.91780 0.92707 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -5.35 10.70 -148.98 -1.59 -6.94 16 3 C 0.05 0.64 6.04 71.98 0.43 1.07 16 4 C 0.12 1.11 6.77 86.38 0.58 1.70 16 5 N -0.28 -4.40 3.41 -347.95 -1.19 -5.59 16 6 C 0.01 0.17 11.40 83.54 0.95 1.12 16 7 C -0.20 -4.42 10.81 22.41 0.24 -4.17 16 8 C -0.04 -1.03 6.97 42.46 0.30 -0.73 16 9 C 0.61 21.75 7.65 86.75 0.66 22.41 16 10 O -0.57 -23.94 16.00 -3.93 -0.06 -24.01 16 11 N -0.60 -20.82 3.08 -790.87 -2.43 -23.25 16 12 C 0.12 3.47 6.16 86.86 0.53 4.00 16 13 C -0.15 -5.04 6.77 31.99 0.22 -4.82 16 14 C 0.17 6.93 3.12 46.18 0.14 7.07 16 15 H 0.07 2.81 7.81 -2.39 -0.02 2.79 16 16 N -0.73 -36.84 5.24 -317.34 -1.66 -38.50 16 17 C -0.24 -13.03 9.97 84.03 0.84 -12.20 16 18 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 19 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 20 N -0.97 -59.87 13.06 21.65 0.28 -59.59 16 21 Si 0.98 45.71 29.55 68.60 2.03 47.73 16 22 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 C 0.13 5.11 3.22 45.29 0.15 5.26 16 26 H 0.05 2.20 7.70 -2.39 -0.02 2.18 16 27 C -0.14 -5.12 9.11 71.98 0.66 -4.47 16 28 N -0.27 -6.36 8.77 -48.17 -0.42 -6.78 16 29 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.11 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.86 8.08 -2.39 -0.02 0.84 16 34 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 35 H 0.15 0.30 8.04 -2.38 -0.02 0.28 16 36 H 0.23 0.61 8.06 -2.91 -0.02 0.59 16 37 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 38 H 0.09 2.63 6.19 -2.39 -0.01 2.61 16 39 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 42 H 0.37 20.71 7.53 -92.71 -0.70 20.02 16 43 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.05 2.04 6.93 -2.39 -0.02 2.02 16 46 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -74.79 381.58 2.65 -72.13 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.28 Total: 30.81 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 7.42 Total: 13.97 kcal Atomic # 7 Polarization: -128.28 SS G_CDS: -5.42 Total: -133.70 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.66 Total: -30.95 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -74.79 2.65 -72.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986542970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.967 kcal (2) G-P(sol) polarization free energy of solvation -74.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds