Wall clock time and date at job start Tue Mar 31 2020 14:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 114.00002 * 2 1 4 4 C 1.52997 * 109.47119 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47084 * 179.97438 * 4 3 2 6 6 C 1.35036 * 124.88341 * 124.99996 * 5 4 3 7 7 C 1.35361 * 107.22903 * 180.02562 * 6 5 4 8 8 C 1.41496 * 105.50497 * 359.97438 * 7 6 5 9 9 C 1.47714 * 126.52066 * 179.97438 * 8 7 6 10 10 O 1.21572 * 119.99790 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00278 * 179.97438 * 9 8 7 12 12 C 1.47471 * 125.62717 * 0.03134 * 11 9 8 13 13 C 1.54906 * 104.81210 * 204.04395 * 12 11 9 14 14 C 1.55156 * 101.61451 * 323.04512 * 13 12 11 15 15 H 1.09005 * 110.72052 * 277.11432 * 14 13 12 16 16 N 1.46497 * 110.71740 * 153.84824 * 14 13 12 17 17 C 1.36937 * 120.00614 * 86.45573 * 16 14 13 18 18 H 1.08004 * 119.99731 * 359.97438 * 17 16 14 19 19 C 1.38807 * 120.00477 * 180.02562 * 17 16 14 20 20 N 1.31614 * 120.00382 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99790 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46773 * 90.00662 * 21 19 17 23 23 H 1.48497 * 109.47129 * 210.00112 * 21 19 17 24 24 H 1.48499 * 109.47224 * 330.00526 * 21 19 17 25 25 C 1.47017 * 125.65312 * 180.02562 * 11 9 8 26 26 H 1.09004 * 110.01118 * 298.49173 * 25 11 9 27 27 C 1.52998 * 109.87941 * 59.58028 * 25 11 9 28 28 N 1.28465 * 124.88644 * 305.34212 * 5 4 3 29 29 H 1.09004 * 109.46752 * 60.00224 * 1 2 3 30 30 H 1.09000 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47181 * 300.00477 * 1 2 3 32 32 H 1.09000 * 109.47200 * 59.99697 * 3 2 1 33 33 H 1.09000 * 109.47109 * 300.00170 * 3 2 1 34 34 H 1.09000 * 109.47043 * 60.00441 * 4 3 2 35 35 H 1.09002 * 109.47124 * 299.99773 * 4 3 2 36 36 H 1.08003 * 126.38960 * 0.04216 * 6 5 4 37 37 H 1.08007 * 127.24796 * 180.02562 * 7 6 5 38 38 H 1.09008 * 110.34870 * 85.22524 * 12 11 9 39 39 H 1.09001 * 110.40581 * 322.89560 * 12 11 9 40 40 H 1.09002 * 111.00655 * 204.94912 * 13 12 11 41 41 H 1.09002 * 111.00329 * 81.13838 * 13 12 11 42 42 H 0.97005 * 119.99905 * 266.44795 * 16 14 13 43 43 H 0.96997 * 120.00558 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.47271 * 177.81128 * 27 25 11 45 45 H 1.08999 * 109.47439 * 297.81123 * 27 25 11 46 46 H 1.09000 * 109.46977 * 57.81672 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5229 0.0000 6 6 5.0255 2.9706 0.9075 7 6 5.3348 4.2447 0.5708 8 6 4.5729 4.5253 -0.5880 9 6 4.5579 5.7940 -1.3443 10 8 5.2496 6.7258 -0.9820 11 7 3.7783 5.9183 -2.4366 12 6 2.8945 4.8727 -2.9847 13 6 2.7283 5.2388 -4.4807 14 6 2.6830 6.7885 -4.4199 15 1 1.6790 7.1357 -4.1757 16 7 3.1410 7.3704 -5.6839 17 6 2.2558 7.5588 -6.7116 18 1 1.2199 7.2780 -6.5903 19 6 2.6898 8.1096 -7.9095 20 7 1.8391 8.2902 -8.8973 21 14 4.4816 8.5946 -8.1194 22 1 5.2464 7.4418 -8.6593 23 1 4.5777 9.7376 -9.0626 24 1 5.0449 8.9898 -6.8035 25 6 3.6680 7.1184 -3.2787 26 1 3.2872 7.9532 -2.6903 27 6 5.0379 7.4739 -3.8598 28 7 3.8736 3.4416 -0.8602 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8463 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8575 0.6436 -0.8892 35 1 3.8567 0.6439 0.8909 36 1 5.4206 2.4155 1.7455 37 1 6.0196 4.9074 1.0793 38 1 1.9283 4.8903 -2.4802 39 1 3.3584 3.8915 -2.8835 40 1 1.7976 4.8361 -4.8805 41 1 3.5826 4.8955 -5.0642 42 1 4.0714 7.6224 -5.7930 43 1 2.1423 8.6754 -9.7343 44 1 4.9415 8.3408 -4.5135 45 1 5.7279 7.7056 -3.0484 46 1 5.4204 6.6284 -4.4318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986542971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:33 Heat of formation + Delta-G solvation = 38.667003 kcal Electronic energy + Delta-G solvation = -27626.204408 eV Core-core repulsion = 23747.372203 eV Total energy + Delta-G solvation = -3878.832204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.88568 -39.83637 -38.47536 -37.45646 -34.41404 -34.15931 -31.85743 -30.92930 -30.75960 -29.99660 -29.06805 -26.83251 -25.39907 -24.82571 -23.26399 -22.67087 -21.92062 -21.29464 -19.67439 -18.76379 -17.92777 -17.74879 -17.08530 -16.70345 -16.45666 -16.08237 -15.64831 -15.31550 -15.07020 -14.47226 -14.25532 -14.13385 -13.87142 -13.56675 -13.33927 -13.25988 -12.87228 -12.59682 -12.50516 -12.17896 -12.08670 -11.92250 -11.85255 -11.68353 -11.35012 -11.18473 -10.94615 -10.76432 -10.48577 -10.26558 -10.24367 -10.04890 -9.83220 -9.54267 -9.46970 -9.28514 -8.93968 -8.39259 -7.30180 -5.79599 -3.15908 1.45972 1.93609 1.99442 3.09663 3.33791 3.36907 3.40251 3.45378 3.49404 4.02733 4.32408 4.43900 4.54035 4.57238 4.65008 4.81711 4.85728 4.93395 5.07838 5.10144 5.15623 5.22036 5.26131 5.30007 5.46514 5.53107 5.56999 5.58434 5.66833 5.79351 5.94094 5.99863 6.09458 6.21057 6.29059 6.43545 6.45707 6.53585 6.57080 6.64507 6.69412 6.90718 7.63092 7.76118 7.96238 8.33544 8.39419 9.17221 9.89551 10.08824 11.38443 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015155 B = 0.003125 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.103935 B = 8958.809748 C =10399.210532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.286 5.286 6 C -0.017 4.017 7 C -0.179 4.179 8 C -0.003 4.003 9 C 0.613 3.387 10 O -0.537 6.537 11 N -0.596 5.596 12 C 0.102 3.898 13 C -0.153 4.153 14 C 0.179 3.821 15 H 0.072 0.928 16 N -0.742 5.742 17 C -0.246 4.246 18 H 0.092 0.908 19 C 0.008 3.992 20 N -0.932 5.932 21 Si 0.878 3.122 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.275 1.275 25 C 0.128 3.872 26 H 0.077 0.923 27 C -0.165 4.165 28 N -0.256 5.256 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.182 0.818 37 H 0.163 0.837 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.368 0.632 43 H 0.260 0.740 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.994 -17.348 22.624 28.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.076 5.076 6 C -0.159 4.159 7 C -0.206 4.206 8 C -0.164 4.164 9 C 0.399 3.601 10 O -0.413 6.413 11 N -0.329 5.329 12 C -0.021 4.021 13 C -0.194 4.194 14 C 0.068 3.932 15 H 0.090 0.910 16 N -0.387 5.387 17 C -0.376 4.376 18 H 0.109 0.891 19 C -0.188 4.188 20 N -0.579 5.579 21 Si 0.708 3.292 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.201 1.201 25 C 0.024 3.976 26 H 0.095 0.905 27 C -0.223 4.223 28 N -0.091 5.091 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.199 0.801 37 H 0.181 0.819 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.204 0.796 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.474 -17.542 21.953 28.139 hybrid contribution 1.552 0.712 0.297 1.734 sum 3.026 -16.830 22.250 28.061 Atomic orbital electron populations 1.22806 0.79662 1.03212 1.00615 1.87766 1.20803 1.26648 1.95647 1.22646 0.92072 0.85656 1.02455 1.21665 0.93138 0.78573 1.06158 1.45409 1.31273 1.11533 1.19343 1.22863 0.98121 0.96558 0.98323 1.21781 1.04626 0.95982 0.98258 1.21993 1.01170 0.93992 0.99215 1.16508 0.79459 0.85030 0.79056 1.90771 1.42651 1.39488 1.68400 1.48390 1.42424 1.16060 1.25982 1.22514 0.93458 0.91644 0.94467 1.23524 1.02836 0.99811 0.93270 1.21151 0.95516 0.91243 0.85258 0.91042 1.42981 1.09213 1.75248 1.11211 1.19060 0.92821 1.34941 0.90751 0.89059 1.24640 0.97097 1.00933 0.96140 1.69687 1.33444 1.50154 1.04640 0.86662 0.86542 0.78362 0.77589 1.20986 1.21592 1.20099 1.21841 0.97229 0.86745 0.91769 0.90517 1.22100 0.96677 1.02149 1.01371 1.73669 1.22535 0.97723 1.15209 0.93363 0.89101 0.93794 0.92513 0.91039 0.87856 0.87036 0.80085 0.81950 0.91855 0.89608 0.90239 0.90872 0.79578 0.92987 0.90798 0.91502 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.93 10.70 -35.23 -0.38 -3.30 16 3 C 0.05 0.34 6.04 37.16 0.22 0.57 16 4 C 0.13 0.76 6.77 -4.04 -0.03 0.74 16 5 N -0.29 -2.61 3.41 -61.33 -0.21 -2.82 16 6 C -0.02 -0.14 11.40 -17.17 -0.20 -0.33 16 7 C -0.18 -2.00 10.81 -39.37 -0.43 -2.43 16 8 C 0.00 -0.04 6.97 -82.76 -0.58 -0.62 16 9 C 0.61 10.27 7.64 -12.39 -0.09 10.18 16 10 O -0.54 -10.28 15.83 5.30 0.08 -10.20 16 11 N -0.60 -9.72 3.08 -164.14 -0.51 -10.23 16 12 C 0.10 1.48 6.15 -2.50 -0.02 1.47 16 13 C -0.15 -2.57 6.77 -24.58 -0.17 -2.73 16 14 C 0.18 3.42 3.46 -66.10 -0.23 3.20 16 15 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 16 N -0.74 -17.25 4.82 -51.66 -0.25 -17.50 16 17 C -0.25 -6.78 10.46 -15.06 -0.16 -6.94 16 18 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 19 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 20 N -0.93 -28.95 13.97 55.49 0.78 -28.17 16 21 Si 0.88 22.03 27.74 -169.99 -4.71 17.31 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.27 -6.49 6.45 56.52 0.36 -6.13 16 25 C 0.13 2.26 3.48 -66.96 -0.23 2.03 16 26 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 27 C -0.16 -3.01 7.95 37.16 0.30 -2.71 16 28 N -0.26 -3.12 8.78 33.42 0.29 -2.83 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.11 0.38 8.04 -51.93 -0.42 -0.03 16 36 H 0.18 0.72 8.06 -52.48 -0.42 0.30 16 37 H 0.16 1.66 8.06 -52.48 -0.42 1.24 16 38 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 39 H 0.09 1.19 6.21 -51.93 -0.32 0.87 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.37 8.49 2.78 -40.82 -0.11 8.38 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.07 1.41 6.60 -51.93 -0.34 1.07 16 45 H 0.07 1.21 6.77 -51.93 -0.35 0.86 16 46 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -34.27 373.85 -6.91 -41.17 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -7.05 Total: 7.08 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -0.58 Total: 3.84 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 0.10 Total: -61.54 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.29 Total: -13.50 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.27 -6.91 -41.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986542971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.842 kcal (2) G-P(sol) polarization free energy of solvation -34.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds