Wall clock time and date at job start Tue Mar 31 2020 14:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 114.00002 * 2 1 4 4 C 1.52997 * 109.47119 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47084 * 179.97438 * 4 3 2 6 6 C 1.35036 * 124.88341 * 124.99996 * 5 4 3 7 7 C 1.35361 * 107.22903 * 180.02562 * 6 5 4 8 8 C 1.41496 * 105.50497 * 359.97438 * 7 6 5 9 9 C 1.47714 * 126.52066 * 179.97438 * 8 7 6 10 10 O 1.21572 * 119.99790 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00278 * 179.97438 * 9 8 7 12 12 C 1.47471 * 125.62717 * 0.03134 * 11 9 8 13 13 C 1.54906 * 104.81210 * 204.04395 * 12 11 9 14 14 C 1.55156 * 101.61451 * 323.04512 * 13 12 11 15 15 H 1.09005 * 110.72052 * 277.11432 * 14 13 12 16 16 N 1.46497 * 110.71740 * 153.84824 * 14 13 12 17 17 C 1.36937 * 120.00614 * 86.45573 * 16 14 13 18 18 H 1.08004 * 119.99731 * 359.97438 * 17 16 14 19 19 C 1.38807 * 120.00477 * 180.02562 * 17 16 14 20 20 N 1.31614 * 120.00382 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99790 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46773 * 90.00662 * 21 19 17 23 23 H 1.48497 * 109.47129 * 210.00112 * 21 19 17 24 24 H 1.48499 * 109.47224 * 330.00526 * 21 19 17 25 25 C 1.47017 * 125.65312 * 180.02562 * 11 9 8 26 26 H 1.09004 * 110.01118 * 298.49173 * 25 11 9 27 27 C 1.52998 * 109.87941 * 59.58028 * 25 11 9 28 28 N 1.28465 * 124.88644 * 305.34212 * 5 4 3 29 29 H 1.09004 * 109.46752 * 60.00224 * 1 2 3 30 30 H 1.09000 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47181 * 300.00477 * 1 2 3 32 32 H 1.09000 * 109.47200 * 59.99697 * 3 2 1 33 33 H 1.09000 * 109.47109 * 300.00170 * 3 2 1 34 34 H 1.09000 * 109.47043 * 60.00441 * 4 3 2 35 35 H 1.09002 * 109.47124 * 299.99773 * 4 3 2 36 36 H 1.08003 * 126.38960 * 0.04216 * 6 5 4 37 37 H 1.08007 * 127.24796 * 180.02562 * 7 6 5 38 38 H 1.09008 * 110.34870 * 85.22524 * 12 11 9 39 39 H 1.09001 * 110.40581 * 322.89560 * 12 11 9 40 40 H 1.09002 * 111.00655 * 204.94912 * 13 12 11 41 41 H 1.09002 * 111.00329 * 81.13838 * 13 12 11 42 42 H 0.97005 * 119.99905 * 266.44795 * 16 14 13 43 43 H 0.96997 * 120.00558 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.47271 * 177.81128 * 27 25 11 45 45 H 1.08999 * 109.47439 * 297.81123 * 27 25 11 46 46 H 1.09000 * 109.46977 * 57.81672 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5229 0.0000 6 6 5.0255 2.9706 0.9075 7 6 5.3348 4.2447 0.5708 8 6 4.5729 4.5253 -0.5880 9 6 4.5579 5.7940 -1.3443 10 8 5.2496 6.7258 -0.9820 11 7 3.7783 5.9183 -2.4366 12 6 2.8945 4.8727 -2.9847 13 6 2.7283 5.2388 -4.4807 14 6 2.6830 6.7885 -4.4199 15 1 1.6790 7.1357 -4.1757 16 7 3.1410 7.3704 -5.6839 17 6 2.2558 7.5588 -6.7116 18 1 1.2199 7.2780 -6.5903 19 6 2.6898 8.1096 -7.9095 20 7 1.8391 8.2902 -8.8973 21 14 4.4816 8.5946 -8.1194 22 1 5.2464 7.4418 -8.6593 23 1 4.5777 9.7376 -9.0626 24 1 5.0449 8.9898 -6.8035 25 6 3.6680 7.1184 -3.2787 26 1 3.2872 7.9532 -2.6903 27 6 5.0379 7.4739 -3.8598 28 7 3.8736 3.4416 -0.8602 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8463 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8575 0.6436 -0.8892 35 1 3.8567 0.6439 0.8909 36 1 5.4206 2.4155 1.7455 37 1 6.0196 4.9074 1.0793 38 1 1.9283 4.8903 -2.4802 39 1 3.3584 3.8915 -2.8835 40 1 1.7976 4.8361 -4.8805 41 1 3.5826 4.8955 -5.0642 42 1 4.0714 7.6224 -5.7930 43 1 2.1423 8.6754 -9.7343 44 1 4.9415 8.3408 -4.5135 45 1 5.7279 7.7056 -3.0484 46 1 5.4204 6.6284 -4.4318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986542971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:32 Heat of formation + Delta-G solvation = 14.957973 kcal Electronic energy + Delta-G solvation = -27627.232509 eV Core-core repulsion = 23747.372203 eV Total energy + Delta-G solvation = -3879.860305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.67671 -41.18509 -39.03706 -38.83197 -36.07387 -34.97701 -33.68195 -32.23481 -31.85525 -31.16332 -30.17920 -27.36726 -26.96395 -25.84781 -24.79373 -23.89218 -22.86444 -22.12679 -21.02546 -20.10970 -19.85125 -18.55709 -18.02637 -17.51296 -17.14938 -17.02623 -16.84810 -16.42602 -16.30029 -15.89080 -15.69803 -15.24478 -14.83793 -14.74908 -14.66646 -14.21535 -14.14751 -13.95721 -13.67197 -13.49398 -13.19948 -13.07786 -12.98338 -12.83486 -12.73350 -12.57006 -12.31121 -12.25820 -11.96047 -11.79708 -11.72777 -11.52221 -11.14288 -10.96441 -10.75451 -10.27736 -10.09453 -9.69579 -9.32918 -8.02530 -5.36186 0.49823 1.18395 1.32293 1.37263 1.38324 1.45251 1.90297 2.33869 2.47025 2.79142 3.25157 3.33142 3.52043 3.58092 3.76446 3.85196 3.86907 3.99294 4.08282 4.13959 4.23935 4.31241 4.32668 4.46219 4.46829 4.50455 4.57701 4.64536 4.68997 4.74273 4.75349 4.79840 4.85229 4.86395 5.01165 5.10294 5.20176 5.21363 5.37379 5.46489 5.77434 5.84578 6.03610 6.21303 6.44429 6.80354 7.05871 7.11487 7.80953 8.00064 9.18585 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015155 B = 0.003125 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.103935 B = 8958.809748 C =10399.210532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.052 3.948 4 C 0.122 3.878 5 N -0.278 5.278 6 C 0.011 3.989 7 C -0.200 4.200 8 C -0.036 4.036 9 C 0.609 3.391 10 O -0.570 6.570 11 N -0.598 5.598 12 C 0.117 3.883 13 C -0.145 4.145 14 C 0.172 3.828 15 H 0.070 0.930 16 N -0.745 5.745 17 C -0.226 4.226 18 H 0.066 0.934 19 C -0.057 4.057 20 N -0.980 5.980 21 Si 0.939 3.061 22 H -0.279 1.279 23 H -0.295 1.295 24 H -0.254 1.254 25 C 0.133 3.867 26 H 0.075 0.925 27 C -0.157 4.157 28 N -0.269 5.269 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.148 0.852 36 H 0.231 0.769 37 H 0.165 0.835 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.370 0.630 43 H 0.258 0.742 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 -19.688 25.202 32.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.026 4.026 4 C 0.003 3.997 5 N -0.068 5.068 6 C -0.131 4.131 7 C -0.228 4.228 8 C -0.195 4.195 9 C 0.398 3.602 10 O -0.448 6.448 11 N -0.330 5.330 12 C -0.006 4.006 13 C -0.185 4.185 14 C 0.063 3.937 15 H 0.088 0.912 16 N -0.390 5.390 17 C -0.357 4.357 18 H 0.084 0.916 19 C -0.249 4.249 20 N -0.631 5.631 21 Si 0.767 3.233 22 H -0.205 1.205 23 H -0.221 1.221 24 H -0.178 1.178 25 C 0.029 3.971 26 H 0.093 0.907 27 C -0.215 4.215 28 N -0.106 5.106 29 H 0.063 0.937 30 H 0.122 0.878 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.126 0.874 35 H 0.166 0.834 36 H 0.247 0.753 37 H 0.183 0.817 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.207 0.793 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.611 -19.919 24.584 31.748 hybrid contribution 1.089 1.299 -0.376 1.736 sum 3.700 -18.620 24.208 30.764 Atomic orbital electron populations 1.22958 0.78825 1.04227 1.00873 1.87743 1.21796 1.26817 1.95677 1.22585 0.92744 0.85456 1.01793 1.21966 0.92411 0.77117 1.08211 1.45734 1.30750 1.11765 1.18524 1.23500 0.96029 0.95399 0.98185 1.21989 1.05213 0.97673 0.97943 1.21713 1.03586 0.93581 1.00603 1.16947 0.78590 0.85846 0.78809 1.90736 1.43897 1.40944 1.69261 1.48409 1.42862 1.15753 1.26015 1.22469 0.93991 0.91571 0.92551 1.23366 1.02701 0.97506 0.94967 1.21312 0.95732 0.92624 0.84066 0.91190 1.42960 1.08690 1.75713 1.11681 1.19033 0.92314 1.32804 0.91575 0.91644 1.25355 1.01339 1.02107 0.96102 1.69847 1.35643 1.52270 1.05309 0.85664 0.81585 0.77809 0.78253 1.20515 1.22138 1.17847 1.21640 0.96488 0.87574 0.91435 0.90654 1.22001 0.96880 1.01584 1.01044 1.73562 1.22703 0.97894 1.16403 0.93658 0.87798 0.93012 0.92261 0.92706 0.87448 0.83411 0.75269 0.81743 0.90340 0.88503 0.89705 0.91884 0.79336 0.93335 0.91686 0.91611 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.40 -5.08 10.70 -148.98 -1.59 -6.68 16 3 C 0.05 0.59 6.04 71.98 0.43 1.03 16 4 C 0.12 1.03 6.77 86.38 0.58 1.62 16 5 N -0.28 -4.12 3.41 -347.95 -1.19 -5.31 16 6 C 0.01 0.14 11.40 83.54 0.95 1.09 16 7 C -0.20 -4.07 10.81 22.41 0.24 -3.83 16 8 C -0.04 -0.96 6.97 42.46 0.30 -0.67 16 9 C 0.61 20.17 7.64 86.75 0.66 20.83 16 10 O -0.57 -21.91 15.83 -3.94 -0.06 -21.98 16 11 N -0.60 -19.12 3.08 -791.47 -2.44 -21.56 16 12 C 0.12 3.23 6.15 86.85 0.53 3.76 16 13 C -0.14 -4.73 6.77 31.98 0.22 -4.51 16 14 C 0.17 6.52 3.46 46.18 0.16 6.68 16 15 H 0.07 2.68 8.12 -2.38 -0.02 2.66 16 16 N -0.74 -34.50 4.82 -317.35 -1.53 -36.03 16 17 C -0.23 -12.64 10.46 84.03 0.88 -11.76 16 18 H 0.07 3.94 8.06 -2.91 -0.02 3.91 16 19 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 20 N -0.98 -62.40 13.97 21.65 0.30 -62.09 16 21 Si 0.94 45.72 27.74 68.60 1.90 47.62 16 22 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 23 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 24 H -0.25 -11.31 6.45 99.48 0.64 -10.66 16 25 C 0.13 4.65 3.48 45.34 0.16 4.81 16 26 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 27 C -0.16 -5.65 7.95 71.98 0.57 -5.08 16 28 N -0.27 -6.00 8.78 -48.17 -0.42 -6.42 16 29 H 0.04 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.80 8.08 -2.39 -0.02 0.78 16 34 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.15 0.23 8.04 -2.39 -0.02 0.21 16 36 H 0.23 0.42 8.06 -2.91 -0.02 0.39 16 37 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 38 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.10 2.53 6.21 -2.39 -0.01 2.52 16 40 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.37 16.78 2.78 -92.70 -0.26 16.53 16 43 H 0.26 15.70 8.31 -92.71 -0.77 14.92 16 44 H 0.06 2.43 6.60 -2.38 -0.02 2.42 16 45 H 0.06 2.38 6.77 -2.39 -0.02 2.36 16 46 H 0.05 1.95 8.08 -2.39 -0.02 1.94 16 Total: -1.00 -75.87 373.85 3.03 -72.84 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.66 Total: 27.02 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 7.41 Total: 12.57 kcal Atomic # 7 Polarization: -126.13 SS G_CDS: -5.28 Total: -131.40 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -1.66 Total: -28.65 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.90 Total: 47.62 kcal Total: -75.87 3.03 -72.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986542971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.798 kcal (2) G-P(sol) polarization free energy of solvation -75.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds