Wall clock time and date at job start Tue Mar 31 2020 14:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00009 * 2 1 4 4 C 1.53001 * 109.47357 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47376 * 180.02562 * 4 3 2 6 6 C 1.34252 * 125.75680 * 124.99784 * 5 4 3 7 7 C 1.38049 * 107.41520 * 179.97438 * 6 5 4 8 8 C 1.47435 * 126.40888 * 180.02562 * 7 6 5 9 9 O 1.21594 * 120.00261 * 351.35986 * 8 7 6 10 10 N 1.34780 * 119.99412 * 171.36298 * 8 7 6 11 11 C 1.47427 * 125.64967 * 1.56985 * 10 8 7 12 12 C 1.54907 * 104.82801 * 204.08936 * 11 10 8 13 13 C 1.55161 * 101.58512 * 322.98757 * 12 11 10 14 14 H 1.09000 * 110.71777 * 277.14161 * 13 12 11 15 15 N 1.46501 * 110.71962 * 154.04340 * 13 12 11 16 16 C 1.36937 * 119.99760 * 86.45502 * 15 13 12 17 17 H 1.08002 * 120.00102 * 359.97438 * 16 15 13 18 18 C 1.38814 * 119.99640 * 179.97438 * 16 15 13 19 19 N 1.31615 * 120.00137 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99697 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47081 * 59.99899 * 20 18 16 22 22 H 1.48499 * 109.47107 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47220 * 299.99712 * 20 18 16 24 24 C 1.47020 * 125.64534 * 181.25669 * 10 8 7 25 25 H 1.09006 * 109.88462 * 298.39519 * 24 10 8 26 26 C 1.53002 * 109.88299 * 59.56014 * 24 10 8 27 27 C 1.41280 * 107.17333 * 359.97438 * 7 6 5 28 28 N 1.30454 * 108.02126 * 359.73863 * 27 7 6 29 29 H 1.08998 * 109.46772 * 60.00106 * 1 2 3 30 30 H 1.08999 * 109.46949 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47090 * 300.00156 * 1 2 3 32 32 H 1.08996 * 109.46807 * 300.00043 * 3 2 1 33 33 H 1.08996 * 109.47141 * 59.99960 * 3 2 1 34 34 H 1.09005 * 109.46368 * 299.99976 * 4 3 2 35 35 H 1.09001 * 109.47084 * 59.99336 * 4 3 2 36 36 H 1.07994 * 126.29349 * 359.95379 * 6 5 4 37 37 H 1.09003 * 110.36648 * 322.92608 * 11 10 8 38 38 H 1.08997 * 110.36634 * 85.25147 * 11 10 8 39 39 H 1.09000 * 111.00798 * 81.06358 * 12 11 10 40 40 H 1.09003 * 111.00398 * 204.91545 * 12 11 10 41 41 H 0.97001 * 120.00058 * 266.45619 * 15 13 12 42 42 H 0.96997 * 120.00131 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.46533 * 58.54955 * 26 24 10 44 44 H 1.09000 * 109.46887 * 178.54305 * 26 24 10 45 45 H 1.08996 * 109.47024 * 298.54260 * 26 24 10 46 46 H 1.07999 * 125.98940 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0216 2.9850 0.8924 7 6 5.3273 4.2834 0.5369 8 6 6.2637 5.1841 1.2337 9 8 6.7327 4.8607 2.3079 10 7 6.5996 6.3661 0.6800 11 6 6.0827 6.8954 -0.5952 12 6 7.1665 7.8906 -1.0798 13 6 7.6299 8.5230 0.2592 14 1 6.9581 9.3275 0.5585 15 7 9.0065 9.0124 0.1522 16 6 9.2501 10.2723 -0.3259 17 1 8.4273 10.9049 -0.6245 18 6 10.5545 10.7362 -0.4267 19 7 11.5572 9.9653 -0.0623 20 14 10.8867 12.4551 -1.0783 21 1 10.2174 13.4531 -0.2058 22 1 12.3501 12.7073 -1.0859 23 1 10.3567 12.5715 -2.4606 24 6 7.5374 7.3440 1.2508 25 1 7.1663 7.6952 2.2137 26 6 8.9161 6.7033 1.4236 27 6 4.5758 4.5870 -0.6203 28 7 3.8739 3.5330 -0.9337 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 3.8574 0.6436 0.8892 35 1 3.8568 0.6439 -0.8908 36 1 5.4243 2.4410 1.7339 37 1 5.9578 6.0890 -1.3179 38 1 5.1368 7.4128 -0.4355 39 1 7.9875 7.3665 -1.5691 40 1 6.7376 8.6444 -1.7401 41 1 9.7455 8.4440 0.4201 42 1 12.4686 10.2896 -0.1325 43 1 9.2760 6.3498 0.4574 44 1 9.6120 7.4411 1.8228 45 1 8.8422 5.8629 2.1136 46 1 4.5840 5.5258 -1.1542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987425148.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:47 Heat of formation + Delta-G solvation = 35.666899 kcal Electronic energy + Delta-G solvation = -26996.664438 eV Core-core repulsion = 23117.702139 eV Total energy + Delta-G solvation = -3878.962299 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.63568 -39.65627 -38.47652 -37.26610 -34.50948 -33.96927 -31.72309 -30.73143 -30.64619 -29.69396 -28.53598 -26.79836 -25.32322 -24.20277 -23.60880 -23.18147 -21.63371 -20.94439 -19.67174 -18.77236 -17.72791 -17.41387 -16.83371 -16.74289 -15.98903 -15.89542 -15.64240 -15.28448 -14.85023 -14.46207 -14.44103 -14.05042 -13.74625 -13.55374 -13.31603 -13.12640 -12.84030 -12.52945 -12.37725 -12.21019 -12.02706 -11.88511 -11.65882 -11.37491 -11.20019 -11.08314 -10.95202 -10.76533 -10.43191 -10.28692 -10.20855 -9.96591 -9.82661 -9.70297 -9.49394 -8.92453 -8.89502 -8.29277 -7.00166 -5.79703 -3.09346 1.36029 1.88652 2.06928 3.22461 3.25614 3.42897 3.47655 3.48594 3.57380 4.11151 4.35177 4.54880 4.56041 4.57281 4.69626 4.80419 4.81734 4.87155 5.02304 5.06071 5.12163 5.15286 5.27447 5.33234 5.35990 5.50900 5.57234 5.62818 5.69819 5.86470 6.08163 6.13914 6.21828 6.27217 6.37337 6.43305 6.56851 6.59784 6.61629 6.77800 6.88989 7.03881 7.30706 7.67538 7.85743 8.38728 8.48066 9.50409 10.06067 10.41022 11.42692 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.036722 B = 0.002173 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.303960 B =12884.438046 C =13348.038604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.135 3.865 5 N -0.364 5.364 6 C 0.128 3.872 7 C -0.280 4.280 8 C 0.606 3.394 9 O -0.552 6.552 10 N -0.603 5.603 11 C 0.086 3.914 12 C -0.154 4.154 13 C 0.173 3.827 14 H 0.062 0.938 15 N -0.717 5.717 16 C -0.244 4.244 17 H 0.071 0.929 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.131 3.869 25 H 0.072 0.928 26 C -0.158 4.158 27 C 0.071 3.929 28 N -0.300 5.300 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.189 0.811 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.391 0.609 42 H 0.257 0.743 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.534 -18.153 -0.574 27.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.145 5.145 6 C -0.023 4.023 7 C -0.295 4.295 8 C 0.396 3.604 9 O -0.432 6.432 10 N -0.336 5.336 11 C -0.037 4.037 12 C -0.195 4.195 13 C 0.061 3.939 14 H 0.080 0.920 15 N -0.360 5.360 16 C -0.375 4.375 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C 0.028 3.972 25 H 0.090 0.910 26 C -0.217 4.217 27 C -0.116 4.116 28 N -0.120 5.120 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.206 0.794 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.229 0.771 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.079 0.921 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -21.067 -19.029 -0.842 28.402 hybrid contribution 0.791 1.342 0.131 1.563 sum -20.277 -17.687 -0.711 26.916 Atomic orbital electron populations 1.22787 0.79883 1.03141 1.00434 1.87778 1.20633 1.26903 1.95618 1.22652 0.92485 0.85363 1.02161 1.21469 0.92706 0.78778 1.05701 1.48309 1.33211 1.12122 1.20839 1.22952 0.90767 0.94382 0.94161 1.20293 1.09891 0.96243 1.03032 1.16794 0.80043 0.79581 0.84004 1.90745 1.56118 1.74585 1.21733 1.48309 1.44395 1.17887 1.22993 1.22770 0.98038 0.97397 0.85524 1.23569 0.97425 0.97750 1.00776 1.21178 0.89383 0.92273 0.91039 0.91965 1.42651 1.00623 1.15861 1.76914 1.19192 0.91974 0.91092 1.35232 0.91112 1.24753 0.95605 0.98361 1.02001 1.69646 0.98420 1.36352 1.53467 0.86254 0.76875 0.84230 0.78696 1.21244 1.21727 1.21260 1.21806 0.89514 0.88714 0.97175 0.91009 1.22003 0.96175 1.01324 1.02160 1.24910 0.93450 0.98246 0.95033 1.77177 1.24613 0.96890 1.13308 0.93656 0.89140 0.93773 0.91422 0.92537 0.87334 0.88338 0.79419 0.90465 0.91406 0.90596 0.90552 0.77102 0.93354 0.92521 0.90290 0.92127 0.77951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -2.92 10.70 -35.23 -0.38 -3.30 16 3 C 0.05 0.36 6.12 37.16 0.23 0.59 16 4 C 0.13 0.92 6.86 -4.04 -0.03 0.89 16 5 N -0.36 -3.59 3.65 -60.81 -0.22 -3.81 16 6 C 0.13 1.37 11.26 -16.56 -0.19 1.19 16 7 C -0.28 -3.65 6.06 -105.07 -0.64 -4.28 16 8 C 0.61 9.75 7.61 -12.51 -0.10 9.65 16 9 O -0.55 -10.47 15.85 5.28 0.08 -10.39 16 10 N -0.60 -9.43 3.08 -164.26 -0.51 -9.94 16 11 C 0.09 1.11 5.27 -2.53 -0.01 1.09 16 12 C -0.15 -2.47 6.77 -24.58 -0.17 -2.63 16 13 C 0.17 3.29 3.44 -66.09 -0.23 3.07 16 14 H 0.06 1.18 8.12 -51.93 -0.42 0.75 16 15 N -0.72 -17.22 5.02 -51.64 -0.26 -17.48 16 16 C -0.24 -6.50 9.98 -15.06 -0.15 -6.65 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 20 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 24 C 0.13 2.34 3.48 -66.95 -0.23 2.11 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 26 C -0.16 -3.01 7.94 37.16 0.30 -2.71 16 27 C 0.07 0.81 10.29 -16.98 -0.17 0.64 16 28 N -0.30 -3.48 12.34 30.86 0.38 -3.10 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.11 0.51 8.06 -51.93 -0.42 0.09 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.19 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.08 0.86 5.27 -51.93 -0.27 0.58 16 38 H 0.07 0.74 8.03 -51.93 -0.42 0.32 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.39 9.97 4.97 -40.82 -0.20 9.77 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.06 1.10 8.06 -51.93 -0.42 0.68 16 44 H 0.08 1.62 6.74 -51.93 -0.35 1.27 16 45 H 0.06 1.15 6.78 -51.93 -0.35 0.80 16 46 H 0.20 1.92 4.81 -52.49 -0.25 1.67 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -33.31 374.47 -6.81 -40.12 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.88 Total: 8.35 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -0.37 Total: 3.82 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.12 Total: -61.11 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.29 Total: -13.68 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.31 -6.81 -40.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987425148.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.786 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds