Wall clock time and date at job start Tue Mar 31 2020 14:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00009 * 2 1 4 4 C 1.53001 * 109.47357 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47376 * 180.02562 * 4 3 2 6 6 C 1.34252 * 125.75680 * 124.99784 * 5 4 3 7 7 C 1.38049 * 107.41520 * 179.97438 * 6 5 4 8 8 C 1.47435 * 126.40888 * 180.02562 * 7 6 5 9 9 O 1.21594 * 120.00261 * 351.35986 * 8 7 6 10 10 N 1.34780 * 119.99412 * 171.36298 * 8 7 6 11 11 C 1.47427 * 125.64967 * 1.56985 * 10 8 7 12 12 C 1.54907 * 104.82801 * 204.08936 * 11 10 8 13 13 C 1.55161 * 101.58512 * 322.98757 * 12 11 10 14 14 H 1.09000 * 110.71777 * 277.14161 * 13 12 11 15 15 N 1.46501 * 110.71962 * 154.04340 * 13 12 11 16 16 C 1.36937 * 119.99760 * 86.45502 * 15 13 12 17 17 H 1.08002 * 120.00102 * 359.97438 * 16 15 13 18 18 C 1.38814 * 119.99640 * 179.97438 * 16 15 13 19 19 N 1.31615 * 120.00137 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99697 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47081 * 59.99899 * 20 18 16 22 22 H 1.48499 * 109.47107 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47220 * 299.99712 * 20 18 16 24 24 C 1.47020 * 125.64534 * 181.25669 * 10 8 7 25 25 H 1.09006 * 109.88462 * 298.39519 * 24 10 8 26 26 C 1.53002 * 109.88299 * 59.56014 * 24 10 8 27 27 C 1.41280 * 107.17333 * 359.97438 * 7 6 5 28 28 N 1.30454 * 108.02126 * 359.73863 * 27 7 6 29 29 H 1.08998 * 109.46772 * 60.00106 * 1 2 3 30 30 H 1.08999 * 109.46949 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47090 * 300.00156 * 1 2 3 32 32 H 1.08996 * 109.46807 * 300.00043 * 3 2 1 33 33 H 1.08996 * 109.47141 * 59.99960 * 3 2 1 34 34 H 1.09005 * 109.46368 * 299.99976 * 4 3 2 35 35 H 1.09001 * 109.47084 * 59.99336 * 4 3 2 36 36 H 1.07994 * 126.29349 * 359.95379 * 6 5 4 37 37 H 1.09003 * 110.36648 * 322.92608 * 11 10 8 38 38 H 1.08997 * 110.36634 * 85.25147 * 11 10 8 39 39 H 1.09000 * 111.00798 * 81.06358 * 12 11 10 40 40 H 1.09003 * 111.00398 * 204.91545 * 12 11 10 41 41 H 0.97001 * 120.00058 * 266.45619 * 15 13 12 42 42 H 0.96997 * 120.00131 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.46533 * 58.54955 * 26 24 10 44 44 H 1.09000 * 109.46887 * 178.54305 * 26 24 10 45 45 H 1.08996 * 109.47024 * 298.54260 * 26 24 10 46 46 H 1.07999 * 125.98940 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0216 2.9850 0.8924 7 6 5.3273 4.2834 0.5369 8 6 6.2637 5.1841 1.2337 9 8 6.7327 4.8607 2.3079 10 7 6.5996 6.3661 0.6800 11 6 6.0827 6.8954 -0.5952 12 6 7.1665 7.8906 -1.0798 13 6 7.6299 8.5230 0.2592 14 1 6.9581 9.3275 0.5585 15 7 9.0065 9.0124 0.1522 16 6 9.2501 10.2723 -0.3259 17 1 8.4273 10.9049 -0.6245 18 6 10.5545 10.7362 -0.4267 19 7 11.5572 9.9653 -0.0623 20 14 10.8867 12.4551 -1.0783 21 1 10.2174 13.4531 -0.2058 22 1 12.3501 12.7073 -1.0859 23 1 10.3567 12.5715 -2.4606 24 6 7.5374 7.3440 1.2508 25 1 7.1663 7.6952 2.2137 26 6 8.9161 6.7033 1.4236 27 6 4.5758 4.5870 -0.6203 28 7 3.8739 3.5330 -0.9337 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 3.8574 0.6436 0.8892 35 1 3.8568 0.6439 -0.8908 36 1 5.4243 2.4410 1.7339 37 1 5.9578 6.0890 -1.3179 38 1 5.1368 7.4128 -0.4355 39 1 7.9875 7.3665 -1.5691 40 1 6.7376 8.6444 -1.7401 41 1 9.7455 8.4440 0.4201 42 1 12.4686 10.2896 -0.1325 43 1 9.2760 6.3498 0.4574 44 1 9.6120 7.4411 1.8228 45 1 8.8422 5.8629 2.1136 46 1 4.5840 5.5258 -1.1542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987425148.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:46 Heat of formation + Delta-G solvation = 12.662346 kcal Electronic energy + Delta-G solvation = -26997.661990 eV Core-core repulsion = 23117.702139 eV Total energy + Delta-G solvation = -3879.959851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.51439 -40.92334 -39.00911 -38.63649 -35.95526 -34.99664 -33.40275 -32.14145 -31.54292 -30.87653 -29.76953 -27.30892 -26.82726 -25.58227 -24.63530 -24.47562 -22.70171 -21.79961 -20.87417 -20.09713 -19.38985 -18.54016 -17.61888 -17.43553 -17.00781 -16.87511 -16.53265 -16.42373 -16.33001 -15.65783 -15.51436 -15.30465 -15.01165 -14.69783 -14.43297 -14.29906 -14.01364 -13.78969 -13.57090 -13.12909 -13.04687 -12.92377 -12.86710 -12.79063 -12.70597 -12.37266 -12.33462 -12.09872 -12.01790 -11.95974 -11.55203 -11.46145 -10.86797 -10.82184 -10.77470 -10.63510 -9.87569 -9.51155 -8.96723 -7.89855 -5.18570 0.48196 1.12276 1.18868 1.51746 1.54337 1.60121 2.02698 2.44099 2.61166 2.72986 3.38478 3.46085 3.68502 3.79084 3.80739 3.85374 3.88506 3.99539 4.07136 4.19211 4.24320 4.30175 4.40125 4.44198 4.45346 4.48920 4.55915 4.60186 4.63043 4.69566 4.71406 4.81056 4.83127 4.93210 5.10083 5.24911 5.28715 5.33155 5.43555 5.56648 5.59394 5.75471 6.02234 6.31575 6.46393 6.64746 7.24527 7.38954 8.13362 8.36825 9.33632 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.036722 B = 0.002173 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.303960 B =12884.438046 C =13348.038604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.057 3.943 4 C 0.130 3.870 5 N -0.357 5.357 6 C 0.140 3.860 7 C -0.307 4.307 8 C 0.605 3.395 9 O -0.590 6.590 10 N -0.605 5.605 11 C 0.093 3.907 12 C -0.145 4.145 13 C 0.165 3.835 14 H 0.068 0.932 15 N -0.732 5.732 16 C -0.237 4.237 17 H 0.082 0.918 18 C -0.077 4.077 19 N -0.971 5.971 20 Si 0.973 3.027 21 H -0.279 1.279 22 H -0.301 1.301 23 H -0.276 1.276 24 C 0.138 3.862 25 H 0.067 0.933 26 C -0.144 4.144 27 C 0.076 3.924 28 N -0.315 5.315 29 H 0.049 0.951 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.133 0.867 35 H 0.105 0.895 36 H 0.209 0.791 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.380 0.620 42 H 0.249 0.751 43 H 0.046 0.954 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.122 -18.860 -1.515 29.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.021 4.021 4 C 0.009 3.991 5 N -0.136 5.136 6 C -0.012 4.012 7 C -0.322 4.322 8 C 0.396 3.604 9 O -0.472 6.472 10 N -0.337 5.337 11 C -0.029 4.029 12 C -0.185 4.185 13 C 0.055 3.945 14 H 0.086 0.914 15 N -0.375 5.375 16 C -0.369 4.369 17 H 0.100 0.900 18 C -0.269 4.269 19 N -0.622 5.622 20 Si 0.802 3.198 21 H -0.205 1.205 22 H -0.228 1.228 23 H -0.202 1.202 24 C 0.033 3.967 25 H 0.085 0.915 26 C -0.202 4.202 27 C -0.111 4.111 28 N -0.135 5.135 29 H 0.067 0.933 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.151 0.849 35 H 0.123 0.877 36 H 0.226 0.774 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.109 0.891 41 H 0.216 0.784 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -23.752 -19.753 -1.824 30.946 hybrid contribution 1.465 1.429 0.456 2.097 sum -22.287 -18.324 -1.368 28.885 Atomic orbital electron populations 1.22969 0.78703 1.04274 1.00938 1.87753 1.21987 1.26977 1.95681 1.22544 0.92562 0.85282 1.01674 1.21749 0.92563 0.77437 1.07311 1.48515 1.32506 1.12641 1.19929 1.23273 0.89914 0.93810 0.94196 1.20113 1.10896 0.96860 1.04314 1.17219 0.79958 0.79550 0.83651 1.90719 1.57726 1.75311 1.23463 1.48308 1.43978 1.17626 1.23762 1.22933 0.97815 0.97518 0.84603 1.23377 0.97833 0.98466 0.98863 1.21389 0.87065 0.92891 0.93137 0.91375 1.42831 1.02430 1.15219 1.76996 1.19624 0.92152 0.91925 1.33160 0.89985 1.25550 0.95714 1.02042 1.03596 1.69818 0.98364 1.38115 1.55884 0.85216 0.75951 0.80120 0.78467 1.20502 1.22781 1.20237 1.21550 0.89301 0.88922 0.96895 0.91539 1.21821 0.96693 1.00504 1.01221 1.25114 0.92727 0.98887 0.94403 1.77162 1.24972 0.97296 1.14047 0.93269 0.87785 0.93163 0.92363 0.92579 0.84876 0.87662 0.77418 0.88024 0.88266 0.92643 0.89057 0.78406 0.94197 0.93495 0.92456 0.92411 0.76286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -5.28 10.70 -148.98 -1.59 -6.88 16 3 C 0.06 0.69 6.12 71.98 0.44 1.13 16 4 C 0.13 1.43 6.86 86.38 0.59 2.02 16 5 N -0.36 -6.11 3.65 -346.31 -1.26 -7.37 16 6 C 0.14 2.69 11.26 84.28 0.95 3.64 16 7 C -0.31 -7.38 6.06 -20.15 -0.12 -7.51 16 8 C 0.60 18.79 7.61 86.67 0.66 19.45 16 9 O -0.59 -22.26 15.85 -4.01 -0.06 -22.32 16 10 N -0.60 -18.13 3.08 -791.86 -2.44 -20.57 16 11 C 0.09 2.14 5.27 86.85 0.46 2.60 16 12 C -0.14 -4.38 6.77 31.99 0.22 -4.17 16 13 C 0.17 6.17 3.44 46.18 0.16 6.33 16 14 H 0.07 2.48 8.12 -2.39 -0.02 2.46 16 15 N -0.73 -35.59 5.02 -317.30 -1.59 -37.18 16 16 C -0.24 -12.61 9.98 84.03 0.84 -11.77 16 17 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 18 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 19 N -0.97 -58.95 13.06 21.65 0.28 -58.67 16 20 Si 0.97 45.29 29.55 68.60 2.03 47.32 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 C 0.14 4.90 3.48 45.35 0.16 5.06 16 25 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 26 C -0.14 -5.67 7.94 71.98 0.57 -5.09 16 27 C 0.08 1.54 10.29 85.65 0.88 2.42 16 28 N -0.32 -6.50 12.34 -56.28 -0.69 -7.20 16 29 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.13 0.84 8.06 -2.38 -0.02 0.82 16 35 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.21 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.10 1.91 5.27 -2.39 -0.01 1.90 16 38 H 0.10 1.75 8.03 -2.39 -0.02 1.73 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 40 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.38 20.04 4.97 -92.71 -0.46 19.58 16 42 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 43 H 0.05 1.89 8.06 -2.39 -0.02 1.87 16 44 H 0.06 2.48 6.74 -2.39 -0.02 2.46 16 45 H 0.06 2.27 6.78 -2.39 -0.02 2.25 16 46 H 0.22 3.37 4.81 -2.91 -0.01 3.36 16 Total: -1.00 -72.87 374.47 2.71 -70.16 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 0.53 Total: 30.98 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 7.52 Total: 11.73 kcal Atomic # 7 Polarization: -125.28 SS G_CDS: -5.71 Total: -130.99 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -1.66 Total: -29.20 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -72.87 2.71 -70.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987425148.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.824 kcal (2) G-P(sol) polarization free energy of solvation -72.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds