Wall clock time and date at job start Tue Mar 31 2020 14:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99728 * 2 1 4 4 C 1.52995 * 109.47170 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47642 * 179.97438 * 4 3 2 6 6 C 1.34253 * 125.75626 * 124.99446 * 5 4 3 7 7 C 1.38054 * 107.41715 * 180.02562 * 6 5 4 8 8 C 1.47430 * 126.41238 * 179.97438 * 7 6 5 9 9 O 1.21598 * 120.00173 * 8.70274 * 8 7 6 10 10 N 1.34775 * 119.99633 * 188.70111 * 8 7 6 11 11 C 1.47432 * 125.64962 * 358.50320 * 10 8 7 12 12 C 1.54902 * 104.83052 * 155.90880 * 11 10 8 13 13 C 1.55157 * 101.58522 * 37.01180 * 12 11 10 14 14 H 1.08996 * 110.72384 * 83.03276 * 13 12 11 15 15 N 1.46498 * 110.72201 * 206.13810 * 13 12 11 16 16 C 1.36944 * 119.99778 * 271.15616 * 15 13 12 17 17 H 1.08004 * 119.99477 * 359.97438 * 16 15 13 18 18 C 1.38807 * 120.00053 * 179.97438 * 16 15 13 19 19 N 1.31615 * 120.00311 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99932 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47097 * 180.02562 * 20 18 16 22 22 H 1.48495 * 109.47443 * 300.00297 * 20 18 16 23 23 H 1.48507 * 109.47166 * 60.00294 * 20 18 16 24 24 C 1.47316 * 125.61515 * 178.72987 * 10 8 7 25 25 H 1.08997 * 110.06637 * 61.67568 * 24 10 8 26 26 C 1.53005 * 109.84984 * 300.41572 * 24 10 8 27 27 C 1.41288 * 107.16725 * 0.22547 * 7 6 5 28 28 N 1.30450 * 108.02615 * 359.62038 * 27 7 6 29 29 H 1.09004 * 109.46691 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47557 * 300.00318 * 1 2 3 31 31 H 1.09000 * 109.46909 * 60.00798 * 1 2 3 32 32 H 1.08997 * 109.47463 * 59.99630 * 3 2 1 33 33 H 1.09006 * 109.46660 * 299.99511 * 3 2 1 34 34 H 1.08997 * 109.47227 * 59.99489 * 4 3 2 35 35 H 1.09005 * 109.47026 * 299.99893 * 4 3 2 36 36 H 1.08006 * 126.29556 * 0.04526 * 6 5 4 37 37 H 1.08997 * 110.36584 * 37.06770 * 11 10 8 38 38 H 1.08998 * 110.36303 * 274.75006 * 11 10 8 39 39 H 1.09001 * 111.00780 * 278.93309 * 12 11 10 40 40 H 1.09008 * 111.00650 * 155.08582 * 12 11 10 41 41 H 0.96996 * 120.01063 * 91.14886 * 15 13 12 42 42 H 0.97000 * 120.00335 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.46882 * 302.39943 * 26 24 10 44 44 H 1.09004 * 109.46998 * 62.39709 * 26 24 10 45 45 H 1.08992 * 109.47352 * 182.39570 * 26 24 10 46 46 H 1.07996 * 125.98464 * 179.73911 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0208 2.9861 0.8926 7 6 5.3260 4.2845 0.5364 8 6 6.2607 5.1866 1.2336 9 8 6.9664 4.7588 2.1267 10 7 6.3330 6.4854 0.8810 11 6 5.5617 7.1267 -0.1995 12 6 5.5118 8.6263 0.1852 13 6 6.9221 8.8384 0.7964 14 1 7.6587 9.0186 0.0135 15 7 6.9094 9.9435 1.7580 16 6 7.1433 11.2240 1.3325 17 1 7.3374 11.4189 0.2881 18 6 7.1308 12.2712 2.2435 19 7 6.8947 12.0335 3.5163 20 14 7.4505 14.0178 1.6632 21 1 7.3829 14.9444 2.8217 22 1 8.7988 14.0954 1.0459 23 1 6.4242 14.4020 0.6609 24 6 7.1996 7.4978 1.5089 25 1 8.2469 7.2222 1.3854 26 6 6.8625 7.6197 2.9964 27 6 4.5704 4.5888 -0.6180 28 7 3.8687 3.5345 -0.9307 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8463 -0.8901 34 1 3.8574 0.6436 -0.8890 35 1 3.8567 0.6440 0.8909 36 1 5.4240 2.4427 1.7344 37 1 4.5545 6.7126 -0.2438 38 1 6.0685 6.9969 -1.1558 39 1 4.7332 8.8144 0.9245 40 1 5.3702 9.2514 -0.6966 41 1 6.7354 9.7684 2.6960 42 1 6.8864 12.7653 4.1530 43 1 5.8094 7.8763 3.1104 44 1 7.0609 6.6698 3.4929 45 1 7.4772 8.3997 3.4455 46 1 4.5746 5.5289 -1.1496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987425161.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:50 Heat of formation + Delta-G solvation = 35.772229 kcal Electronic energy + Delta-G solvation = -27035.460987 eV Core-core repulsion = 23156.503256 eV Total energy + Delta-G solvation = -3878.957731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.63186 -39.63771 -38.46345 -37.26141 -34.50846 -33.96746 -31.72501 -30.72324 -30.64407 -29.69077 -28.53379 -26.78517 -25.32560 -24.19529 -23.60828 -23.17659 -21.63425 -20.94039 -19.66851 -18.76968 -17.73028 -17.41795 -16.80876 -16.73556 -16.01432 -15.92872 -15.49017 -15.31154 -14.96823 -14.56968 -14.22770 -13.95769 -13.85544 -13.59593 -13.29143 -13.10356 -12.82607 -12.56092 -12.35096 -12.18093 -12.03192 -11.87976 -11.65874 -11.39556 -11.19500 -11.08049 -10.95076 -10.76512 -10.43168 -10.27470 -10.20819 -9.97627 -9.82541 -9.70819 -9.49098 -8.92913 -8.89277 -8.29184 -7.00806 -5.80213 -3.09893 1.36145 1.89296 2.07041 3.21819 3.26784 3.42589 3.47419 3.48265 3.58021 4.11547 4.36127 4.55122 4.56104 4.57371 4.70295 4.81920 4.83549 4.87608 5.03123 5.05689 5.13034 5.16892 5.27767 5.33597 5.35525 5.51043 5.57603 5.62801 5.69793 5.86613 6.08063 6.13623 6.21929 6.27001 6.37023 6.44161 6.57344 6.59389 6.61470 6.77218 6.89264 7.03274 7.30843 7.67098 7.86180 8.38229 8.48441 9.49884 10.05449 10.40343 11.42154 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027045 B = 0.002241 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.075040 B =12490.321080 C =12815.376665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.135 3.865 5 N -0.364 5.364 6 C 0.128 3.872 7 C -0.280 4.280 8 C 0.606 3.394 9 O -0.553 6.553 10 N -0.604 5.604 11 C 0.086 3.914 12 C -0.154 4.154 13 C 0.173 3.827 14 H 0.064 0.936 15 N -0.717 5.717 16 C -0.244 4.244 17 H 0.071 0.929 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.909 3.091 21 H -0.291 1.291 22 H -0.286 1.286 23 H -0.286 1.286 24 C 0.131 3.869 25 H 0.072 0.928 26 C -0.158 4.158 27 C 0.071 3.929 28 N -0.300 5.300 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.189 0.811 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.391 0.609 42 H 0.257 0.743 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.277 -22.683 -8.499 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.027 4.027 4 C 0.014 3.986 5 N -0.145 5.145 6 C -0.023 4.023 7 C -0.295 4.295 8 C 0.396 3.604 9 O -0.432 6.432 10 N -0.337 5.337 11 C -0.037 4.037 12 C -0.196 4.196 13 C 0.061 3.939 14 H 0.082 0.918 15 N -0.360 5.360 16 C -0.375 4.375 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.212 1.212 23 H -0.213 1.213 24 C 0.028 3.972 25 H 0.090 0.910 26 C -0.216 4.216 27 C -0.117 4.117 28 N -0.120 5.120 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.206 0.794 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.229 0.771 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -10.665 -23.619 -8.872 27.392 hybrid contribution 0.325 1.552 0.511 1.666 sum -10.341 -22.068 -8.361 25.765 Atomic orbital electron populations 1.22789 0.79858 1.03135 1.00474 1.87773 1.20656 1.26898 1.95627 1.22656 0.92464 0.85374 1.02213 1.21468 0.92732 0.78766 1.05660 1.48315 1.33156 1.12054 1.20963 1.22957 0.90889 0.94227 0.94200 1.20300 1.09907 0.96048 1.03206 1.16796 0.81580 0.80026 0.82040 1.90746 1.44917 1.75522 1.32008 1.48387 1.42617 1.07518 1.35135 1.22762 0.95623 0.94920 0.90385 1.23573 1.01945 0.92224 1.01819 1.21189 0.94034 0.86471 0.92213 0.91767 1.42668 1.84609 1.01839 1.06899 1.19202 1.40962 0.83831 0.93516 0.91102 1.24754 1.02478 0.98084 0.95432 1.69646 1.55778 1.31331 1.01147 0.86250 0.78050 0.84517 0.77225 1.21733 1.21234 1.21254 1.21888 0.93404 0.87944 0.94010 0.90966 1.22001 1.02228 1.02301 0.95108 1.24915 0.93309 0.97935 0.95495 1.77176 1.24758 0.96757 1.13299 0.89144 0.93735 0.93651 0.92505 0.91404 0.88371 0.87335 0.79419 0.90506 0.91386 0.90641 0.90546 0.77093 0.93349 0.92605 0.92155 0.90189 0.77948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.98 10.70 -35.23 -0.38 -3.36 16 3 C 0.05 0.37 6.11 37.16 0.23 0.59 16 4 C 0.14 0.92 6.86 -4.05 -0.03 0.90 16 5 N -0.36 -3.59 3.65 -60.81 -0.22 -3.81 16 6 C 0.13 1.38 11.26 -16.56 -0.19 1.19 16 7 C -0.28 -3.65 6.06 -105.06 -0.64 -4.29 16 8 C 0.61 9.76 7.61 -12.52 -0.10 9.67 16 9 O -0.55 -10.50 15.87 5.28 0.08 -10.41 16 10 N -0.60 -9.44 3.09 -164.05 -0.51 -9.95 16 11 C 0.09 1.11 5.27 -2.53 -0.01 1.10 16 12 C -0.15 -2.46 6.77 -24.59 -0.17 -2.63 16 13 C 0.17 3.28 3.46 -66.09 -0.23 3.05 16 14 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 15 N -0.72 -17.18 4.98 -51.65 -0.26 -17.44 16 16 C -0.24 -6.50 9.97 -15.06 -0.15 -6.65 16 17 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 20 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 24 C 0.13 2.33 3.49 -66.79 -0.23 2.10 16 25 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 26 C -0.16 -3.00 7.94 37.16 0.30 -2.71 16 27 C 0.07 0.81 10.29 -16.98 -0.17 0.64 16 28 N -0.30 -3.48 12.33 30.86 0.38 -3.10 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.11 0.51 8.06 -51.93 -0.42 0.10 16 36 H 0.19 1.60 8.06 -52.48 -0.42 1.17 16 37 H 0.08 0.85 5.26 -51.93 -0.27 0.57 16 38 H 0.07 0.74 8.03 -51.93 -0.42 0.33 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.08 1.15 8.14 -51.92 -0.42 0.72 16 41 H 0.39 9.95 4.99 -40.82 -0.20 9.75 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.05 1.08 8.06 -51.93 -0.42 0.66 16 44 H 0.06 1.14 6.81 -51.93 -0.35 0.79 16 45 H 0.08 1.65 6.72 -51.93 -0.35 1.30 16 46 H 0.20 1.92 4.80 -52.49 -0.25 1.67 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -33.26 374.47 -6.81 -40.07 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.88 Total: 8.43 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -0.37 Total: 3.83 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 0.12 Total: -61.06 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.29 Total: -13.77 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.26 -6.81 -40.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987425161.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.846 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds