Wall clock time and date at job start Tue Mar 31 2020 14:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00079 * 2 1 4 4 C 1.52998 * 109.47213 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47199 * 179.97438 * 4 3 2 6 6 C 1.34262 * 125.75304 * 124.99740 * 5 4 3 7 7 C 1.38040 * 107.41648 * 180.02562 * 6 5 4 8 8 C 1.47431 * 126.41442 * 179.97438 * 7 6 5 9 9 O 1.21598 * 119.99944 * 8.65914 * 8 7 6 10 10 N 1.34773 * 119.99833 * 188.65454 * 8 7 6 11 11 C 1.47419 * 125.65308 * 358.61333 * 10 8 7 12 12 C 1.54909 * 104.83727 * 155.90474 * 11 10 8 13 13 C 1.55160 * 101.57973 * 37.00755 * 12 11 10 14 14 H 1.09000 * 110.71605 * 83.04295 * 13 12 11 15 15 N 1.46496 * 110.72169 * 206.13789 * 13 12 11 16 16 C 1.36938 * 119.99791 * 273.55066 * 15 13 12 17 17 H 1.07996 * 120.00181 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99822 * 179.97438 * 16 15 13 19 19 N 1.31614 * 120.00145 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99904 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46903 * 60.00261 * 20 18 16 22 22 H 1.48496 * 109.47341 * 300.00082 * 20 18 16 23 23 H 1.48500 * 109.47037 * 179.97438 * 20 18 16 24 24 C 1.47018 * 125.64591 * 178.64924 * 10 8 7 25 25 H 1.09001 * 109.88607 * 300.44717 * 24 10 8 26 26 C 1.53001 * 109.88335 * 61.60996 * 24 10 8 27 27 C 1.41289 * 107.17141 * 0.22786 * 7 6 5 28 28 N 1.30454 * 108.02475 * 359.61542 * 27 7 6 29 29 H 1.08999 * 109.47345 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47340 * 300.00176 * 1 2 3 31 31 H 1.09002 * 109.46776 * 60.00049 * 1 2 3 32 32 H 1.08999 * 109.47051 * 59.99696 * 3 2 1 33 33 H 1.09008 * 109.47154 * 300.00186 * 3 2 1 34 34 H 1.09002 * 109.46794 * 60.00246 * 4 3 2 35 35 H 1.08996 * 109.47175 * 299.99825 * 4 3 2 36 36 H 1.07997 * 126.28906 * 0.02562 * 6 5 4 37 37 H 1.09004 * 110.36505 * 37.06137 * 11 10 8 38 38 H 1.09003 * 110.36639 * 274.74725 * 11 10 8 39 39 H 1.09001 * 111.00265 * 278.93787 * 12 11 10 40 40 H 1.08996 * 111.00715 * 155.08559 * 12 11 10 41 41 H 0.97005 * 120.00166 * 93.54358 * 15 13 12 42 42 H 0.97005 * 120.00421 * 0.02562 * 19 18 16 43 43 H 1.08998 * 109.47475 * 177.80705 * 26 24 10 44 44 H 1.09006 * 109.47091 * 297.80774 * 26 24 10 45 45 H 1.09001 * 109.46983 * 57.80590 * 26 24 10 46 46 H 1.08002 * 125.98814 * 179.73833 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0210 2.9860 0.8926 7 6 5.3261 4.2844 0.5365 8 6 6.2608 5.1864 1.2338 9 8 6.9660 4.7588 2.1274 10 7 6.3338 6.4850 0.8806 11 6 5.5617 7.1266 -0.1990 12 6 5.5135 8.6265 0.1852 13 6 6.9248 8.8375 0.7946 14 1 7.6604 9.0169 0.0105 15 7 6.9144 9.9429 1.7558 16 6 7.1001 11.2286 1.3226 17 1 7.2546 11.4276 0.2725 18 6 7.0897 12.2762 2.2334 19 7 6.9009 12.0338 3.5132 20 14 7.3438 14.0300 1.6426 21 1 6.2755 14.3858 0.6744 22 1 8.6686 14.1426 0.9814 23 1 7.2885 14.9559 2.8023 24 6 7.1972 7.4963 1.5078 25 1 6.9561 7.5841 2.5672 26 6 8.6663 7.1048 1.3363 27 6 4.5704 4.5888 -0.6178 28 7 3.8688 3.5345 -0.9306 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8574 0.6436 -0.8892 35 1 3.8567 0.6439 0.8908 36 1 5.4238 2.4426 1.7345 37 1 4.5540 6.7134 -0.2418 38 1 6.0670 6.9961 -1.1559 39 1 4.7361 8.8154 0.9255 40 1 5.3713 9.2513 -0.6965 41 1 6.7759 9.7642 2.6991 42 1 6.7694 11.1230 3.8201 43 1 9.3013 7.8779 1.7691 44 1 8.8513 6.1572 1.8423 45 1 8.8930 7.0004 0.2752 46 1 4.5746 5.5290 -1.1494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987425162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:53 Heat of formation + Delta-G solvation = 29.056162 kcal Electronic energy + Delta-G solvation = -26970.103986 eV Core-core repulsion = 23090.855024 eV Total energy + Delta-G solvation = -3879.248962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.67836 -39.69610 -38.48614 -37.30078 -34.59354 -34.17098 -31.80600 -30.99336 -30.68129 -29.61806 -28.62522 -26.81552 -25.19018 -24.11606 -23.56612 -23.07749 -21.52289 -21.00860 -20.14434 -19.20601 -17.70248 -17.37902 -16.83286 -16.79089 -16.18654 -15.92183 -15.75039 -15.11492 -14.99526 -14.66727 -14.35338 -14.01146 -13.76753 -13.61509 -13.41467 -13.25053 -12.88691 -12.73163 -12.53117 -12.25536 -12.18797 -11.94729 -11.88231 -11.46918 -11.21682 -11.16271 -10.93242 -10.62170 -10.51619 -10.29665 -10.19928 -9.99984 -9.87183 -9.65583 -9.20677 -8.94841 -8.93663 -8.37175 -7.09426 -6.13513 -3.15092 1.31554 1.85462 2.02003 3.15495 3.22807 3.50320 3.51068 3.53714 3.71377 4.08203 4.33462 4.51127 4.52234 4.63902 4.67384 4.79226 4.81433 4.82253 4.96721 5.00184 5.10510 5.15148 5.20186 5.27763 5.29445 5.41450 5.46147 5.58272 5.67597 5.73289 5.90350 5.98356 6.05451 6.16265 6.25105 6.40920 6.41239 6.53716 6.54444 6.58270 6.72313 6.87070 7.26537 7.75929 7.78645 8.40667 8.71471 9.16334 10.02898 10.16831 11.34346 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024661 B = 0.002261 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.118774 B =12381.921245 C =12890.665689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.135 3.865 5 N -0.364 5.364 6 C 0.129 3.871 7 C -0.281 4.281 8 C 0.606 3.394 9 O -0.552 6.552 10 N -0.603 5.603 11 C 0.087 3.913 12 C -0.155 4.155 13 C 0.181 3.819 14 H 0.066 0.934 15 N -0.726 5.726 16 C -0.334 4.334 17 H 0.066 0.934 18 C -0.043 4.043 19 N -0.941 5.941 20 Si 1.080 2.920 21 H -0.295 1.295 22 H -0.295 1.295 23 H -0.285 1.285 24 C 0.130 3.870 25 H 0.075 0.925 26 C -0.154 4.154 27 C 0.071 3.929 28 N -0.299 5.299 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.189 0.811 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.369 0.631 42 H 0.256 0.744 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.709 -22.955 -9.544 26.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.014 3.986 5 N -0.144 5.144 6 C -0.022 4.022 7 C -0.295 4.295 8 C 0.396 3.604 9 O -0.432 6.432 10 N -0.336 5.336 11 C -0.036 4.036 12 C -0.197 4.197 13 C 0.070 3.930 14 H 0.084 0.916 15 N -0.368 5.368 16 C -0.464 4.464 17 H 0.084 0.916 18 C -0.241 4.241 19 N -0.585 5.585 20 Si 0.911 3.089 21 H -0.222 1.222 22 H -0.222 1.222 23 H -0.211 1.211 24 C 0.026 3.974 25 H 0.093 0.907 26 C -0.213 4.213 27 C -0.117 4.117 28 N -0.119 5.119 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.206 0.794 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.202 0.798 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -9.998 -22.398 -9.589 26.336 hybrid contribution 0.079 -1.096 0.231 1.123 sum -9.919 -23.494 -9.359 27.165 Atomic orbital electron populations 1.22789 0.79836 1.03155 1.00479 1.87772 1.20674 1.26870 1.95626 1.22654 0.92437 0.85400 1.02216 1.21478 0.92757 0.78714 1.05692 1.48327 1.33110 1.12072 1.20927 1.22954 0.90853 0.94190 0.94188 1.20268 1.09967 0.96051 1.03256 1.16810 0.81544 0.80017 0.82028 1.90748 1.44950 1.75414 1.32048 1.48261 1.42292 1.07629 1.35431 1.22777 0.95651 0.94737 0.90450 1.23563 1.01824 0.92316 1.01949 1.21187 0.94029 0.85675 0.92136 0.91590 1.42352 1.87162 1.02361 1.04930 1.19996 1.47360 0.84377 0.94707 0.91565 1.25795 1.00308 1.03680 0.94296 1.70879 1.51597 1.22015 1.14058 0.83238 0.75810 0.75092 0.74758 1.22236 1.22211 1.21062 1.21869 0.89996 0.87704 0.97814 0.90737 1.22051 0.95362 1.02296 1.01545 1.24908 0.93312 0.97955 0.95477 1.77181 1.24703 0.96733 1.13274 0.89122 0.93728 0.93650 0.92512 0.91396 0.88331 0.87311 0.79392 0.90385 0.91346 0.90735 0.90438 0.79753 0.93291 0.91321 0.91788 0.92993 0.77974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.96 10.70 -35.23 -0.38 -3.33 16 3 C 0.05 0.36 6.11 37.16 0.23 0.59 16 4 C 0.13 0.91 6.86 -4.04 -0.03 0.88 16 5 N -0.36 -3.56 3.65 -60.81 -0.22 -3.78 16 6 C 0.13 1.37 11.26 -16.56 -0.19 1.19 16 7 C -0.28 -3.64 6.06 -105.07 -0.64 -4.28 16 8 C 0.61 9.73 7.64 -12.52 -0.10 9.63 16 9 O -0.55 -10.44 15.91 5.28 0.08 -10.35 16 10 N -0.60 -9.43 3.06 -164.28 -0.50 -9.93 16 11 C 0.09 1.13 5.27 -2.53 -0.01 1.11 16 12 C -0.16 -2.52 6.77 -24.58 -0.17 -2.68 16 13 C 0.18 3.47 3.11 -66.10 -0.21 3.26 16 14 H 0.07 1.28 7.84 -51.93 -0.41 0.87 16 15 N -0.73 -17.53 5.25 -51.65 -0.27 -17.80 16 16 C -0.33 -9.02 9.98 -15.06 -0.15 -9.17 16 17 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 18 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 19 N -0.94 -28.68 13.70 55.49 0.76 -27.92 16 20 Si 1.08 25.38 29.92 -169.99 -5.09 20.30 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.13 2.31 3.22 -66.95 -0.22 2.09 16 25 H 0.07 1.48 7.69 -51.93 -0.40 1.08 16 26 C -0.15 -2.61 9.10 37.16 0.34 -2.27 16 27 C 0.07 0.81 10.29 -16.98 -0.17 0.64 16 28 N -0.30 -3.45 12.33 30.86 0.38 -3.07 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.11 0.51 8.06 -51.93 -0.42 0.09 16 36 H 0.19 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.08 0.86 5.27 -51.93 -0.27 0.59 16 38 H 0.07 0.76 8.03 -51.93 -0.42 0.34 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.37 9.36 6.34 -40.82 -0.26 9.10 16 42 H 0.26 7.71 6.78 -40.82 -0.28 7.43 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.12 6.86 -51.93 -0.36 0.76 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.20 1.92 4.80 -52.49 -0.25 1.67 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -34.34 376.97 -6.76 -41.10 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.92 Total: 8.16 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -0.29 Total: 0.96 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: 0.14 Total: -62.51 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.29 Total: -13.69 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.09 Total: 20.30 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.34 -6.76 -41.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987425162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.152 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds