Wall clock time and date at job start Tue Mar 31 2020 14:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00079 * 2 1 4 4 C 1.52998 * 109.47213 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47199 * 179.97438 * 4 3 2 6 6 C 1.34262 * 125.75304 * 124.99740 * 5 4 3 7 7 C 1.38040 * 107.41648 * 180.02562 * 6 5 4 8 8 C 1.47431 * 126.41442 * 179.97438 * 7 6 5 9 9 O 1.21598 * 119.99944 * 8.65914 * 8 7 6 10 10 N 1.34773 * 119.99833 * 188.65454 * 8 7 6 11 11 C 1.47419 * 125.65308 * 358.61333 * 10 8 7 12 12 C 1.54909 * 104.83727 * 155.90474 * 11 10 8 13 13 C 1.55160 * 101.57973 * 37.00755 * 12 11 10 14 14 H 1.09000 * 110.71605 * 83.04295 * 13 12 11 15 15 N 1.46496 * 110.72169 * 206.13789 * 13 12 11 16 16 C 1.36938 * 119.99791 * 273.55066 * 15 13 12 17 17 H 1.07996 * 120.00181 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99822 * 179.97438 * 16 15 13 19 19 N 1.31614 * 120.00145 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99904 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46903 * 60.00261 * 20 18 16 22 22 H 1.48496 * 109.47341 * 300.00082 * 20 18 16 23 23 H 1.48500 * 109.47037 * 179.97438 * 20 18 16 24 24 C 1.47018 * 125.64591 * 178.64924 * 10 8 7 25 25 H 1.09001 * 109.88607 * 300.44717 * 24 10 8 26 26 C 1.53001 * 109.88335 * 61.60996 * 24 10 8 27 27 C 1.41289 * 107.17141 * 0.22786 * 7 6 5 28 28 N 1.30454 * 108.02475 * 359.61542 * 27 7 6 29 29 H 1.08999 * 109.47345 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47340 * 300.00176 * 1 2 3 31 31 H 1.09002 * 109.46776 * 60.00049 * 1 2 3 32 32 H 1.08999 * 109.47051 * 59.99696 * 3 2 1 33 33 H 1.09008 * 109.47154 * 300.00186 * 3 2 1 34 34 H 1.09002 * 109.46794 * 60.00246 * 4 3 2 35 35 H 1.08996 * 109.47175 * 299.99825 * 4 3 2 36 36 H 1.07997 * 126.28906 * 0.02562 * 6 5 4 37 37 H 1.09004 * 110.36505 * 37.06137 * 11 10 8 38 38 H 1.09003 * 110.36639 * 274.74725 * 11 10 8 39 39 H 1.09001 * 111.00265 * 278.93787 * 12 11 10 40 40 H 1.08996 * 111.00715 * 155.08559 * 12 11 10 41 41 H 0.97005 * 120.00166 * 93.54358 * 15 13 12 42 42 H 0.97005 * 120.00421 * 0.02562 * 19 18 16 43 43 H 1.08998 * 109.47475 * 177.80705 * 26 24 10 44 44 H 1.09006 * 109.47091 * 297.80774 * 26 24 10 45 45 H 1.09001 * 109.46983 * 57.80590 * 26 24 10 46 46 H 1.08002 * 125.98814 * 179.73833 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0210 2.9860 0.8926 7 6 5.3261 4.2844 0.5365 8 6 6.2608 5.1864 1.2338 9 8 6.9660 4.7588 2.1274 10 7 6.3338 6.4850 0.8806 11 6 5.5617 7.1266 -0.1990 12 6 5.5135 8.6265 0.1852 13 6 6.9248 8.8375 0.7946 14 1 7.6604 9.0169 0.0105 15 7 6.9144 9.9429 1.7558 16 6 7.1001 11.2286 1.3226 17 1 7.2546 11.4276 0.2725 18 6 7.0897 12.2762 2.2334 19 7 6.9009 12.0338 3.5132 20 14 7.3438 14.0300 1.6426 21 1 6.2755 14.3858 0.6744 22 1 8.6686 14.1426 0.9814 23 1 7.2885 14.9559 2.8023 24 6 7.1972 7.4963 1.5078 25 1 6.9561 7.5841 2.5672 26 6 8.6663 7.1048 1.3363 27 6 4.5704 4.5888 -0.6178 28 7 3.8688 3.5345 -0.9306 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8574 0.6436 -0.8892 35 1 3.8567 0.6439 0.8908 36 1 5.4238 2.4426 1.7345 37 1 4.5540 6.7134 -0.2418 38 1 6.0670 6.9961 -1.1559 39 1 4.7361 8.8154 0.9255 40 1 5.3713 9.2513 -0.6965 41 1 6.7759 9.7642 2.6991 42 1 6.7694 11.1230 3.8201 43 1 9.3013 7.8779 1.7691 44 1 8.8513 6.1572 1.8423 45 1 8.8930 7.0004 0.2752 46 1 4.5746 5.5290 -1.1494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987425162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:52 Heat of formation + Delta-G solvation = 4.933004 kcal Electronic energy + Delta-G solvation = -26971.150044 eV Core-core repulsion = 23090.855024 eV Total energy + Delta-G solvation = -3880.295020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.55738 -40.95559 -39.03081 -38.68063 -36.25773 -35.07508 -33.38455 -32.39581 -31.56179 -30.82493 -29.83741 -27.32412 -26.73587 -25.24327 -24.82826 -24.36957 -22.65442 -21.94346 -21.44003 -20.38275 -19.38243 -18.46822 -17.70619 -17.42484 -17.40083 -16.81621 -16.64940 -16.46251 -16.00537 -15.88062 -15.61124 -15.24312 -15.15561 -14.74942 -14.50071 -14.38005 -14.06708 -14.02265 -13.66586 -13.38325 -13.07695 -12.93147 -12.74327 -12.69319 -12.64941 -12.37652 -12.26288 -12.12179 -12.01679 -11.85376 -11.67270 -11.24923 -10.93319 -10.84087 -10.79533 -10.67232 -9.93443 -9.58007 -9.10863 -8.35480 -5.30976 0.43611 1.07729 1.15048 1.61900 1.71904 1.87448 1.94851 2.37284 2.70383 2.75110 3.34387 3.43547 3.60339 3.65009 3.74875 3.80201 3.82880 3.91669 4.00847 4.12656 4.17011 4.25926 4.29285 4.33460 4.43398 4.44530 4.46540 4.50276 4.60762 4.62746 4.65595 4.72675 4.81337 4.86923 5.00176 5.17193 5.18661 5.25956 5.37000 5.43507 5.65024 5.71745 5.99612 6.42116 6.50593 6.57217 7.08625 7.17608 7.98059 8.11617 9.15756 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024661 B = 0.002261 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.118774 B =12381.921245 C =12890.665689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.056 3.944 4 C 0.130 3.870 5 N -0.356 5.356 6 C 0.141 3.859 7 C -0.308 4.308 8 C 0.604 3.396 9 O -0.590 6.590 10 N -0.605 5.605 11 C 0.095 3.905 12 C -0.147 4.147 13 C 0.175 3.825 14 H 0.069 0.931 15 N -0.741 5.741 16 C -0.323 4.323 17 H 0.075 0.925 18 C -0.107 4.107 19 N -0.978 5.978 20 Si 1.128 2.872 21 H -0.275 1.275 22 H -0.277 1.277 23 H -0.298 1.298 24 C 0.136 3.864 25 H 0.044 0.956 26 C -0.144 4.144 27 C 0.075 3.925 28 N -0.314 5.314 29 H 0.105 0.895 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.108 0.892 35 H 0.134 0.866 36 H 0.210 0.790 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.357 0.643 42 H 0.242 0.758 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.565 -24.319 -11.931 29.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.022 4.022 4 C 0.010 3.990 5 N -0.135 5.135 6 C -0.011 4.011 7 C -0.323 4.323 8 C 0.396 3.604 9 O -0.472 6.472 10 N -0.337 5.337 11 C -0.027 4.027 12 C -0.188 4.188 13 C 0.065 3.935 14 H 0.087 0.913 15 N -0.382 5.382 16 C -0.455 4.455 17 H 0.093 0.907 18 C -0.298 4.298 19 N -0.626 5.626 20 Si 0.953 3.047 21 H -0.201 1.201 22 H -0.203 1.203 23 H -0.225 1.225 24 C 0.032 3.968 25 H 0.062 0.938 26 C -0.202 4.202 27 C -0.112 4.112 28 N -0.133 5.133 29 H 0.123 0.877 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.152 0.848 36 H 0.226 0.774 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.189 0.811 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -10.891 -23.823 -12.063 28.839 hybrid contribution 0.291 -0.846 0.941 1.298 sum -10.600 -24.669 -11.122 29.062 Atomic orbital electron populations 1.22968 0.78716 1.04307 1.00905 1.87748 1.21962 1.26910 1.95675 1.22552 0.92674 0.85318 1.01622 1.21761 0.92448 0.77376 1.07420 1.48535 1.32408 1.12598 1.19986 1.23277 0.90011 0.93580 0.94225 1.20089 1.10979 0.96661 1.04539 1.17244 0.81451 0.80097 0.81581 1.90722 1.46607 1.76076 1.33814 1.48276 1.42170 1.07399 1.35896 1.22933 0.97234 0.91933 0.90611 1.23380 0.98640 0.95155 1.01592 1.21379 0.95987 0.84749 0.91347 0.91280 1.42538 1.87486 1.02945 1.05257 1.20354 1.44677 0.85494 0.94935 0.90701 1.27200 1.00910 1.07712 0.94007 1.70993 1.54902 1.21165 1.15533 0.82620 0.77054 0.70676 0.74338 1.20082 1.20340 1.22495 1.21572 0.91000 0.88024 0.96220 0.93753 1.21941 0.94583 1.01314 1.02394 1.25105 0.92568 0.98615 0.94863 1.77166 1.25008 0.97142 1.14024 0.87697 0.93286 0.93257 0.92791 0.92326 0.87424 0.84847 0.77379 0.87845 0.88258 0.92764 0.89090 0.81086 0.94747 0.92502 0.92592 0.91259 0.76339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.40 -5.36 10.70 -148.98 -1.59 -6.96 16 3 C 0.06 0.70 6.11 71.98 0.44 1.14 16 4 C 0.13 1.42 6.86 86.38 0.59 2.01 16 5 N -0.36 -6.06 3.65 -346.30 -1.26 -7.32 16 6 C 0.14 2.70 11.26 84.27 0.95 3.65 16 7 C -0.31 -7.41 6.06 -20.15 -0.12 -7.53 16 8 C 0.60 18.89 7.64 86.67 0.66 19.55 16 9 O -0.59 -22.39 15.91 -4.02 -0.06 -22.45 16 10 N -0.61 -18.30 3.06 -791.91 -2.43 -20.73 16 11 C 0.09 2.21 5.27 86.86 0.46 2.66 16 12 C -0.15 -4.54 6.77 31.99 0.22 -4.33 16 13 C 0.17 6.63 3.11 46.18 0.14 6.78 16 14 H 0.07 2.59 7.84 -2.39 -0.02 2.57 16 15 N -0.74 -36.46 5.25 -317.33 -1.67 -38.13 16 16 C -0.32 -17.51 9.98 84.03 0.84 -16.67 16 17 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 18 C -0.11 -6.15 5.50 84.86 0.47 -5.68 16 19 N -0.98 -61.35 13.70 21.65 0.30 -61.05 16 20 Si 1.13 51.08 29.92 68.60 2.05 53.13 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 24 C 0.14 4.90 3.22 45.34 0.15 5.04 16 25 H 0.04 1.86 7.69 -2.39 -0.02 1.84 16 26 C -0.14 -4.90 9.10 71.98 0.65 -4.24 16 27 C 0.08 1.53 10.29 85.65 0.88 2.41 16 28 N -0.31 -6.45 12.33 -56.27 -0.69 -7.14 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 34 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.13 0.82 8.06 -2.39 -0.02 0.80 16 36 H 0.21 3.00 8.06 -2.91 -0.02 2.97 16 37 H 0.10 1.95 5.27 -2.39 -0.01 1.94 16 38 H 0.10 1.79 8.03 -2.39 -0.02 1.77 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.36 19.00 6.34 -92.70 -0.59 18.41 16 42 H 0.24 15.27 6.78 -92.70 -0.63 14.64 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.06 1.99 6.86 -2.38 -0.02 1.97 16 45 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.22 3.38 4.80 -2.91 -0.01 3.36 16 Total: -1.00 -75.73 376.97 2.76 -72.97 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.55 Total: 31.42 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 7.57 Total: 6.27 kcal Atomic # 7 Polarization: -128.62 SS G_CDS: -5.75 Total: -134.38 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -1.66 Total: -29.41 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 2.05 Total: 53.13 kcal Total: -75.73 2.76 -72.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987425162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.899 kcal (2) G-P(sol) polarization free energy of solvation -75.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds