Wall clock time and date at job start Tue Mar 31 2020 14:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99960 * 2 1 4 4 C 1.53003 * 109.47019 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47061 * 180.02562 * 4 3 2 6 6 C 1.34262 * 125.75506 * 124.99663 * 5 4 3 7 7 C 1.38044 * 107.41427 * 180.02562 * 6 5 4 8 8 C 1.47435 * 126.41070 * 179.97438 * 7 6 5 9 9 O 1.21598 * 119.99952 * 353.15488 * 8 7 6 10 10 N 1.34780 * 119.99571 * 173.14963 * 8 7 6 11 11 C 1.47424 * 125.65138 * 354.12165 * 10 8 7 12 12 C 1.54913 * 104.83190 * 204.15000 * 11 10 8 13 13 C 1.55155 * 101.58107 * 322.99303 * 12 11 10 14 14 H 1.09004 * 110.71794 * 277.13746 * 13 12 11 15 15 N 1.46495 * 110.72154 * 153.86722 * 13 12 11 16 16 C 1.36937 * 120.00076 * 91.47415 * 15 13 12 17 17 H 1.08002 * 119.99872 * 359.97438 * 16 15 13 18 18 C 1.38817 * 120.00266 * 180.02562 * 16 15 13 19 19 N 1.31623 * 119.99427 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00221 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47055 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.46834 * 120.00161 * 20 18 16 23 23 H 1.48503 * 109.47100 * 240.00207 * 20 18 16 24 24 C 1.47027 * 125.64510 * 174.14799 * 10 8 7 25 25 H 1.08996 * 109.88219 * 59.50057 * 24 10 8 26 26 C 1.52998 * 109.88096 * 298.33571 * 24 10 8 27 27 C 1.41293 * 107.17487 * 0.22721 * 7 6 5 28 28 N 1.30450 * 108.01721 * 359.61996 * 27 7 6 29 29 H 1.08991 * 109.47609 * 300.00285 * 1 2 3 30 30 H 1.09007 * 109.47037 * 60.00258 * 1 2 3 31 31 H 1.09000 * 109.46834 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46711 * 59.99759 * 3 2 1 33 33 H 1.08996 * 109.47007 * 299.99657 * 3 2 1 34 34 H 1.08993 * 109.47263 * 59.99741 * 4 3 2 35 35 H 1.09005 * 109.46973 * 300.00010 * 4 3 2 36 36 H 1.08000 * 126.29058 * 0.04387 * 6 5 4 37 37 H 1.08998 * 110.36505 * 85.31250 * 11 10 8 38 38 H 1.09008 * 110.36562 * 322.98779 * 11 10 8 39 39 H 1.09001 * 111.00338 * 204.91233 * 12 11 10 40 40 H 1.09001 * 111.03358 * 81.08162 * 12 11 10 41 41 H 0.96999 * 119.99847 * 271.47538 * 15 13 12 42 42 H 0.97003 * 119.99558 * 180.02562 * 19 18 16 43 43 H 1.09006 * 109.47130 * 302.19361 * 26 24 10 44 44 H 1.09004 * 109.47009 * 62.19162 * 26 24 10 45 45 H 1.08996 * 109.46952 * 182.19335 * 26 24 10 46 46 H 1.07993 * 125.99157 * 179.73628 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0209 2.9853 0.8943 7 6 5.3260 4.2839 0.5393 8 6 6.2606 5.1854 1.2374 9 8 6.7538 4.8483 2.2965 10 7 6.5684 6.3832 0.7016 11 6 6.1435 6.8658 -0.6251 12 6 7.2006 7.9279 -1.0180 13 6 7.4891 8.6011 0.3498 14 1 6.7396 9.3610 0.5713 15 7 8.8356 9.1779 0.3700 16 6 9.0280 10.4809 -0.0048 17 1 8.1871 11.0832 -0.3155 18 6 10.3039 11.0273 0.0138 19 7 11.3289 10.2928 0.3911 20 14 10.5665 12.8045 -0.4981 21 1 9.2637 13.4079 -0.8774 22 1 11.1534 13.5642 0.6348 23 1 11.4910 12.8538 -1.6591 24 6 7.3841 7.4248 1.3431 25 1 8.3780 7.0347 1.5622 26 6 6.7093 7.8925 2.6342 27 6 4.5704 4.5894 -0.6149 28 7 3.8688 3.5353 -0.9285 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8574 0.6436 -0.8890 35 1 3.8567 0.6439 0.8909 36 1 5.4239 2.4410 1.7356 37 1 5.1543 7.3194 -0.5647 38 1 6.1431 6.0468 -1.3444 39 1 6.7885 8.6454 -1.7275 40 1 8.0983 7.4569 -1.4187 41 1 9.5908 8.6368 0.6487 42 1 12.2205 10.6747 0.4044 43 1 5.7092 8.2625 2.4080 44 1 6.6386 7.0568 3.3305 45 1 7.2992 8.6912 3.0837 46 1 4.5745 5.5299 -1.1456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987425163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:56 Heat of formation + Delta-G solvation = 25.052595 kcal Electronic energy + Delta-G solvation = -26890.246263 eV Core-core repulsion = 23010.823693 eV Total energy + Delta-G solvation = -3879.422569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.63222 -39.61119 -38.47723 -37.21114 -34.45631 -33.96784 -31.70509 -30.93384 -30.64339 -29.67815 -28.72503 -26.80253 -25.30210 -24.14774 -23.49776 -23.03187 -21.46041 -20.93834 -20.01463 -19.11598 -17.65174 -17.22809 -16.82452 -16.72544 -16.13350 -15.89893 -15.69642 -15.15684 -14.82063 -14.47938 -14.37502 -13.97697 -13.62287 -13.56658 -13.33494 -13.10084 -12.81611 -12.69912 -12.53369 -12.17856 -12.07607 -11.89629 -11.81976 -11.46567 -11.17133 -11.08951 -11.00691 -10.82164 -10.57241 -10.28991 -10.20887 -9.99400 -9.83691 -9.76130 -9.56618 -8.93768 -8.90501 -8.29230 -7.01864 -5.80773 -3.10981 1.35327 1.88102 2.06464 3.22445 3.25616 3.41541 3.47260 3.49540 3.56289 4.10619 4.34809 4.53944 4.55693 4.56684 4.69263 4.80359 4.81557 4.88592 5.01482 5.06254 5.11881 5.15110 5.26394 5.32634 5.36960 5.48564 5.50689 5.60575 5.73062 5.83259 5.97607 6.12400 6.16113 6.21244 6.32625 6.42936 6.49702 6.56451 6.61706 6.65184 6.81610 6.95064 7.30195 7.67107 7.85580 8.36418 8.47516 9.48185 10.03165 10.37788 11.41419 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.035570 B = 0.002149 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.997546 B =13024.879146 C =13354.651378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.135 3.865 5 N -0.364 5.364 6 C 0.128 3.872 7 C -0.280 4.280 8 C 0.606 3.394 9 O -0.552 6.552 10 N -0.604 5.604 11 C 0.091 3.909 12 C -0.157 4.157 13 C 0.176 3.824 14 H 0.068 0.932 15 N -0.714 5.714 16 C -0.243 4.243 17 H 0.073 0.927 18 C -0.011 4.011 19 N -0.929 5.929 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C 0.128 3.872 25 H 0.078 0.922 26 C -0.153 4.153 27 C 0.075 3.925 28 N -0.300 5.300 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.189 0.811 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.668 -18.592 -1.522 27.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.014 3.986 5 N -0.145 5.145 6 C -0.022 4.022 7 C -0.295 4.295 8 C 0.396 3.604 9 O -0.432 6.432 10 N -0.337 5.337 11 C -0.032 4.032 12 C -0.198 4.198 13 C 0.064 3.936 14 H 0.086 0.914 15 N -0.354 5.354 16 C -0.374 4.374 17 H 0.091 0.909 18 C -0.207 4.207 19 N -0.577 5.577 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C 0.024 3.976 25 H 0.096 0.904 26 C -0.211 4.211 27 C -0.113 4.113 28 N -0.120 5.120 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.206 0.794 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -21.222 -19.460 -1.794 28.849 hybrid contribution 0.817 1.342 0.247 1.591 sum -20.404 -18.117 -1.547 27.331 Atomic orbital electron populations 1.22786 0.79882 1.03142 1.00437 1.87777 1.20635 1.26901 1.95619 1.22655 0.92483 0.85365 1.02166 1.21471 0.92705 0.78764 1.05703 1.48313 1.33206 1.12034 1.20938 1.22963 0.90811 0.94353 0.94115 1.20303 1.09841 0.96214 1.03148 1.16804 0.80110 0.79553 0.83957 1.90752 1.54616 1.74570 1.23227 1.48276 1.51957 1.15118 1.18350 1.22672 0.98611 0.97684 0.84273 1.23598 0.97965 0.97135 1.01124 1.21243 0.90066 0.91719 0.90524 0.91433 1.42357 1.02104 1.11537 1.79397 1.19267 0.93064 0.87849 1.37209 0.90909 1.24771 0.95676 0.98242 1.02035 1.69681 0.98827 1.35634 1.53546 0.86112 0.77628 0.84636 0.77744 1.20502 1.21845 1.21875 1.21940 0.94388 0.87693 0.93557 0.90408 1.22032 1.00256 1.01572 0.97269 1.24763 0.93355 0.98105 0.95038 1.77170 1.24570 0.96775 1.13485 0.93764 0.93664 0.89139 0.92546 0.91409 0.88332 0.87330 0.79407 0.91550 0.90761 0.90505 0.90599 0.77959 0.93446 0.93108 0.92221 0.91099 0.78274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -2.91 10.70 -35.23 -0.38 -3.29 16 3 C 0.05 0.36 6.11 37.16 0.23 0.58 16 4 C 0.14 0.91 6.86 -4.04 -0.03 0.88 16 5 N -0.36 -3.57 3.65 -60.81 -0.22 -3.79 16 6 C 0.13 1.37 11.26 -16.56 -0.19 1.19 16 7 C -0.28 -3.64 6.04 -105.06 -0.63 -4.28 16 8 C 0.61 9.77 7.58 -12.51 -0.09 9.68 16 9 O -0.55 -10.55 16.19 5.28 0.09 -10.47 16 10 N -0.60 -9.45 3.06 -164.27 -0.50 -9.95 16 11 C 0.09 1.17 5.09 -2.53 -0.01 1.16 16 12 C -0.16 -2.50 6.77 -24.58 -0.17 -2.67 16 13 C 0.18 3.33 3.14 -66.10 -0.21 3.12 16 14 H 0.07 1.27 7.80 -51.93 -0.41 0.86 16 15 N -0.71 -17.18 5.22 -51.65 -0.27 -17.45 16 16 C -0.24 -6.46 9.96 -15.06 -0.15 -6.61 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 20 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 C 0.13 2.27 3.18 -66.95 -0.21 2.06 16 25 H 0.08 1.57 7.72 -51.93 -0.40 1.17 16 26 C -0.15 -2.57 9.10 37.16 0.34 -2.23 16 27 C 0.07 0.86 10.27 -16.98 -0.17 0.68 16 28 N -0.30 -3.46 12.33 30.86 0.38 -3.08 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.20 8.14 -51.92 -0.42 -0.22 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.11 0.51 8.06 -51.93 -0.42 0.09 16 36 H 0.19 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.07 0.72 7.71 -51.93 -0.40 0.32 16 38 H 0.07 0.83 5.96 -51.92 -0.31 0.52 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.39 10.09 7.56 -40.82 -0.31 9.78 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 1.03 7.10 -51.93 -0.37 0.66 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.20 1.88 4.88 -52.49 -0.26 1.63 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -33.33 379.38 -6.84 -40.16 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.06 Total: 7.70 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -0.29 Total: 4.44 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.11 Total: -61.11 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.29 Total: -13.75 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.33 -6.84 -40.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987425163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.217 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds