Wall clock time and date at job start Tue Mar 31 2020 14:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99960 * 2 1 4 4 C 1.53003 * 109.47019 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47061 * 180.02562 * 4 3 2 6 6 C 1.34262 * 125.75506 * 124.99663 * 5 4 3 7 7 C 1.38044 * 107.41427 * 180.02562 * 6 5 4 8 8 C 1.47435 * 126.41070 * 179.97438 * 7 6 5 9 9 O 1.21598 * 119.99952 * 353.15488 * 8 7 6 10 10 N 1.34780 * 119.99571 * 173.14963 * 8 7 6 11 11 C 1.47424 * 125.65138 * 354.12165 * 10 8 7 12 12 C 1.54913 * 104.83190 * 204.15000 * 11 10 8 13 13 C 1.55155 * 101.58107 * 322.99303 * 12 11 10 14 14 H 1.09004 * 110.71794 * 277.13746 * 13 12 11 15 15 N 1.46495 * 110.72154 * 153.86722 * 13 12 11 16 16 C 1.36937 * 120.00076 * 91.47415 * 15 13 12 17 17 H 1.08002 * 119.99872 * 359.97438 * 16 15 13 18 18 C 1.38817 * 120.00266 * 180.02562 * 16 15 13 19 19 N 1.31623 * 119.99427 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00221 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47055 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.46834 * 120.00161 * 20 18 16 23 23 H 1.48503 * 109.47100 * 240.00207 * 20 18 16 24 24 C 1.47027 * 125.64510 * 174.14799 * 10 8 7 25 25 H 1.08996 * 109.88219 * 59.50057 * 24 10 8 26 26 C 1.52998 * 109.88096 * 298.33571 * 24 10 8 27 27 C 1.41293 * 107.17487 * 0.22721 * 7 6 5 28 28 N 1.30450 * 108.01721 * 359.61996 * 27 7 6 29 29 H 1.08991 * 109.47609 * 300.00285 * 1 2 3 30 30 H 1.09007 * 109.47037 * 60.00258 * 1 2 3 31 31 H 1.09000 * 109.46834 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46711 * 59.99759 * 3 2 1 33 33 H 1.08996 * 109.47007 * 299.99657 * 3 2 1 34 34 H 1.08993 * 109.47263 * 59.99741 * 4 3 2 35 35 H 1.09005 * 109.46973 * 300.00010 * 4 3 2 36 36 H 1.08000 * 126.29058 * 0.04387 * 6 5 4 37 37 H 1.08998 * 110.36505 * 85.31250 * 11 10 8 38 38 H 1.09008 * 110.36562 * 322.98779 * 11 10 8 39 39 H 1.09001 * 111.00338 * 204.91233 * 12 11 10 40 40 H 1.09001 * 111.03358 * 81.08162 * 12 11 10 41 41 H 0.96999 * 119.99847 * 271.47538 * 15 13 12 42 42 H 0.97003 * 119.99558 * 180.02562 * 19 18 16 43 43 H 1.09006 * 109.47130 * 302.19361 * 26 24 10 44 44 H 1.09004 * 109.47009 * 62.19162 * 26 24 10 45 45 H 1.08996 * 109.46952 * 182.19335 * 26 24 10 46 46 H 1.07993 * 125.99157 * 179.73628 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0209 2.9853 0.8943 7 6 5.3260 4.2839 0.5393 8 6 6.2606 5.1854 1.2374 9 8 6.7538 4.8483 2.2965 10 7 6.5684 6.3832 0.7016 11 6 6.1435 6.8658 -0.6251 12 6 7.2006 7.9279 -1.0180 13 6 7.4891 8.6011 0.3498 14 1 6.7396 9.3610 0.5713 15 7 8.8356 9.1779 0.3700 16 6 9.0280 10.4809 -0.0048 17 1 8.1871 11.0832 -0.3155 18 6 10.3039 11.0273 0.0138 19 7 11.3289 10.2928 0.3911 20 14 10.5665 12.8045 -0.4981 21 1 9.2637 13.4079 -0.8774 22 1 11.1534 13.5642 0.6348 23 1 11.4910 12.8538 -1.6591 24 6 7.3841 7.4248 1.3431 25 1 8.3780 7.0347 1.5622 26 6 6.7093 7.8925 2.6342 27 6 4.5704 4.5894 -0.6149 28 7 3.8688 3.5353 -0.9285 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8574 0.6436 -0.8890 35 1 3.8567 0.6439 0.8909 36 1 5.4239 2.4410 1.7356 37 1 5.1543 7.3194 -0.5647 38 1 6.1431 6.0468 -1.3444 39 1 6.7885 8.6454 -1.7275 40 1 8.0983 7.4569 -1.4187 41 1 9.5908 8.6368 0.6487 42 1 12.2205 10.6747 0.4044 43 1 5.7092 8.2625 2.4080 44 1 6.6386 7.0568 3.3305 45 1 7.2992 8.6912 3.0837 46 1 4.5745 5.5299 -1.1456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987425163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:55 Heat of formation + Delta-G solvation = 1.672591 kcal Electronic energy + Delta-G solvation = -26891.260096 eV Core-core repulsion = 23010.823693 eV Total energy + Delta-G solvation = -3880.436403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.50615 -40.86489 -39.00361 -38.58316 -35.92887 -35.00689 -33.33585 -32.32060 -31.53440 -30.92465 -29.84241 -27.29164 -26.88102 -25.20218 -24.68823 -24.31517 -22.57525 -21.84096 -21.33732 -20.28971 -19.15500 -18.46039 -17.62827 -17.44301 -17.29462 -16.67879 -16.55367 -16.46995 -16.12117 -15.52027 -15.39764 -15.30931 -15.02513 -14.68237 -14.52884 -14.30435 -13.99253 -13.90373 -13.53967 -13.26035 -13.04163 -13.02730 -12.88855 -12.72096 -12.55504 -12.43002 -12.34900 -12.11233 -12.04768 -11.98524 -11.68218 -11.48599 -10.93054 -10.82809 -10.77803 -10.63675 -9.88242 -9.50900 -8.99123 -7.91340 -5.20927 0.47386 1.11434 1.19176 1.51412 1.51816 1.61791 2.03355 2.43025 2.60114 2.72835 3.37990 3.45090 3.68714 3.78918 3.79959 3.85446 3.88346 3.99257 4.11512 4.19551 4.23962 4.29845 4.39259 4.45442 4.45697 4.48813 4.56121 4.56623 4.63034 4.68650 4.73311 4.78109 4.83158 4.95793 5.10039 5.25990 5.28096 5.31910 5.44381 5.53108 5.58828 5.75063 6.02216 6.29185 6.46245 6.64890 7.23903 7.35556 8.08256 8.31792 9.32429 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.035570 B = 0.002149 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.997546 B =13024.879146 C =13354.651378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.057 3.943 4 C 0.130 3.870 5 N -0.357 5.357 6 C 0.140 3.860 7 C -0.307 4.307 8 C 0.604 3.396 9 O -0.592 6.592 10 N -0.606 5.606 11 C 0.098 3.902 12 C -0.149 4.149 13 C 0.171 3.829 14 H 0.076 0.924 15 N -0.729 5.729 16 C -0.234 4.234 17 H 0.085 0.915 18 C -0.078 4.078 19 N -0.972 5.972 20 Si 0.973 3.027 21 H -0.261 1.261 22 H -0.298 1.298 23 H -0.297 1.297 24 C 0.134 3.866 25 H 0.043 0.957 26 C -0.143 4.143 27 C 0.080 3.920 28 N -0.315 5.315 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.104 0.896 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.133 0.867 36 H 0.209 0.791 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.370 0.630 42 H 0.249 0.751 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.058 0.942 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.464 -19.195 -2.627 30.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.021 4.021 4 C 0.009 3.991 5 N -0.136 5.136 6 C -0.012 4.012 7 C -0.322 4.322 8 C 0.396 3.604 9 O -0.475 6.475 10 N -0.338 5.338 11 C -0.024 4.024 12 C -0.189 4.189 13 C 0.061 3.939 14 H 0.094 0.906 15 N -0.367 5.367 16 C -0.365 4.365 17 H 0.103 0.897 18 C -0.270 4.270 19 N -0.623 5.623 20 Si 0.802 3.198 21 H -0.185 1.185 22 H -0.226 1.226 23 H -0.225 1.225 24 C 0.029 3.971 25 H 0.061 0.939 26 C -0.201 4.201 27 C -0.107 4.107 28 N -0.134 5.134 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.122 0.878 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.124 0.876 35 H 0.151 0.849 36 H 0.225 0.775 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.202 0.798 42 H 0.058 0.942 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -24.118 -20.083 -2.946 31.523 hybrid contribution 1.567 1.381 0.604 2.174 sum -22.550 -18.702 -2.342 29.390 Atomic orbital electron populations 1.22967 0.78705 1.04274 1.00939 1.87752 1.21985 1.26978 1.95680 1.22546 0.92562 0.85283 1.01677 1.21752 0.92557 0.77421 1.07321 1.48518 1.32490 1.12559 1.20014 1.23275 0.89983 0.93788 0.94148 1.20110 1.10809 0.96814 1.04463 1.17247 0.80002 0.79572 0.83596 1.90725 1.56305 1.75345 1.25091 1.48292 1.51589 1.14768 1.19167 1.22839 0.98814 0.97585 0.83182 1.23416 0.98302 0.97995 0.99233 1.21447 0.87670 0.92198 0.92587 0.90611 1.42535 1.03707 1.10947 1.79546 1.19694 0.93187 0.88768 1.34870 0.89678 1.25578 0.95746 1.02174 1.03473 1.69849 0.98956 1.37362 1.56091 0.85075 0.77925 0.80120 0.76643 1.18470 1.22582 1.22462 1.21640 0.93452 0.87967 0.94003 0.93900 1.21922 1.00938 1.00769 0.96470 1.24978 0.92585 0.98769 0.94365 1.77156 1.24917 0.97169 1.14198 0.93169 0.93265 0.87787 0.92613 0.92326 0.87614 0.84903 0.77474 0.88164 0.88446 0.88864 0.92774 0.79769 0.94216 0.91080 0.93114 0.92294 0.76547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -5.25 10.70 -148.98 -1.59 -6.85 16 3 C 0.06 0.69 6.11 71.98 0.44 1.13 16 4 C 0.13 1.42 6.86 86.38 0.59 2.01 16 5 N -0.36 -6.08 3.65 -346.29 -1.26 -7.34 16 6 C 0.14 2.70 11.26 84.28 0.95 3.65 16 7 C -0.31 -7.40 6.04 -20.15 -0.12 -7.52 16 8 C 0.60 19.00 7.58 86.67 0.66 19.65 16 9 O -0.59 -22.83 16.19 -4.02 -0.07 -22.89 16 10 N -0.61 -18.31 3.06 -791.87 -2.43 -20.74 16 11 C 0.10 2.24 5.09 86.86 0.44 2.69 16 12 C -0.15 -4.50 6.77 31.99 0.22 -4.28 16 13 C 0.17 6.34 3.14 46.18 0.14 6.49 16 14 H 0.08 2.71 7.80 -2.38 -0.02 2.69 16 15 N -0.73 -35.62 5.22 -317.34 -1.66 -37.27 16 16 C -0.23 -12.40 9.96 84.03 0.84 -11.56 16 17 H 0.09 4.23 7.83 -2.91 -0.02 4.21 16 18 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 19 N -0.97 -59.39 13.06 21.65 0.28 -59.11 16 20 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 21 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 22 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 24 C 0.13 4.81 3.18 45.34 0.14 4.95 16 25 H 0.04 1.83 7.72 -2.39 -0.02 1.82 16 26 C -0.14 -4.79 9.10 71.98 0.65 -4.13 16 27 C 0.08 1.61 10.27 85.65 0.88 2.49 16 28 N -0.31 -6.44 12.33 -56.28 -0.69 -7.13 16 29 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 31 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.05 16 35 H 0.13 0.83 8.06 -2.38 -0.02 0.81 16 36 H 0.21 3.04 8.06 -2.91 -0.02 3.01 16 37 H 0.10 1.72 7.71 -2.39 -0.02 1.70 16 38 H 0.10 1.86 5.96 -2.38 -0.01 1.84 16 39 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.37 20.20 7.56 -92.71 -0.70 19.50 16 42 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.05 1.78 7.10 -2.38 -0.02 1.76 16 45 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.22 3.28 4.88 -2.91 -0.01 3.27 16 Total: -1.00 -73.64 379.38 2.45 -71.19 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.29 Total: 29.71 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 7.55 Total: 13.12 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -5.76 Total: -131.59 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -1.66 Total: -29.74 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -73.64 2.45 -71.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987425163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.864 kcal (2) G-P(sol) polarization free energy of solvation -73.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds