Wall clock time and date at job start Tue Mar 31 2020 14:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00048 * 2 1 4 4 C 1.52999 * 109.47365 * 184.94044 * 3 2 1 5 5 N 1.46506 * 109.47189 * 184.95512 * 4 3 2 6 6 N 1.28439 * 125.19136 * 273.80912 * 5 4 3 7 7 C 1.30862 * 110.92405 * 179.97438 * 6 5 4 8 8 C 1.39677 * 107.86398 * 359.77140 * 7 6 5 9 9 C 1.36604 * 125.18563 * 93.78709 * 5 4 3 10 10 C 1.47171 * 126.88451 * 359.97438 * 9 5 4 11 11 O 1.21626 * 119.99891 * 352.90350 * 10 9 5 12 12 N 1.34770 * 119.99410 * 172.89808 * 10 9 5 13 13 C 1.47462 * 125.63486 * 1.19580 * 12 10 9 14 14 C 1.54914 * 104.80989 * 204.06832 * 13 12 10 15 15 H 1.09002 * 111.00752 * 81.13793 * 14 13 12 16 16 N 1.46507 * 111.00265 * 204.94648 * 14 13 12 17 17 C 1.36938 * 119.99717 * 271.79419 * 16 14 13 18 18 H 1.07997 * 120.00446 * 354.91236 * 17 16 14 19 19 C 1.38810 * 119.99608 * 174.64121 * 17 16 14 20 20 N 1.31620 * 120.00285 * 0.27024 * 19 17 16 21 21 Si 1.86800 * 119.99935 * 180.27279 * 19 17 16 22 22 H 1.48500 * 109.47001 * 59.99760 * 21 19 17 23 23 H 1.48496 * 109.47264 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47106 * 299.99737 * 21 19 17 25 25 C 1.55151 * 101.61556 * 323.04072 * 14 13 12 26 26 C 1.47032 * 125.64414 * 181.19022 * 12 10 9 27 27 H 1.09000 * 110.01032 * 59.48580 * 26 12 10 28 28 C 1.53001 * 109.88148 * 298.39534 * 26 12 10 29 29 H 1.09004 * 109.47047 * 64.95113 * 1 2 3 30 30 H 1.08999 * 109.46539 * 184.94473 * 1 2 3 31 31 H 1.08997 * 109.47494 * 304.94605 * 1 2 3 32 32 H 1.09000 * 109.47181 * 64.94225 * 3 2 1 33 33 H 1.09002 * 109.47228 * 304.94517 * 3 2 1 34 34 H 1.09002 * 109.47088 * 64.96210 * 4 3 2 35 35 H 1.08996 * 109.47369 * 304.95859 * 4 3 2 36 36 H 1.07998 * 126.07179 * 179.97438 * 7 6 5 37 37 H 1.08002 * 127.32145 * 180.26395 * 8 7 6 38 38 H 1.08994 * 110.35467 * 85.24974 * 13 12 10 39 39 H 1.09002 * 110.40213 * 322.91047 * 13 12 10 40 40 H 0.96999 * 120.00049 * 91.79055 * 16 14 13 41 41 H 0.96996 * 120.00326 * 179.97438 * 20 19 17 42 42 H 1.09004 * 110.71869 * 153.85231 * 25 14 13 43 43 H 1.09007 * 110.71718 * 276.93901 * 25 14 13 44 44 H 1.08994 * 109.47201 * 302.19091 * 28 26 12 45 45 H 1.08999 * 109.47176 * 62.18928 * 28 26 12 46 46 H 1.08998 * 109.47129 * 182.18986 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5305 1.1869 -0.1242 5 7 4.1354 2.5160 -0.0055 6 7 4.3028 3.3423 -0.9745 7 6 4.8683 4.4455 -0.5554 8 6 5.0829 4.3216 0.8192 9 6 4.6069 3.0656 1.1528 10 6 4.6032 2.4485 2.4889 11 8 4.0314 1.3902 2.6683 12 7 5.2336 3.0562 3.5134 13 6 5.9415 4.3478 3.4419 14 6 6.9648 4.3034 4.6040 15 1 7.8544 3.7412 4.3200 16 7 7.3196 5.6553 5.0432 17 6 8.3524 6.3222 4.4401 18 1 8.9578 5.8227 3.6983 19 6 8.6177 7.6421 4.7782 20 7 7.8800 8.2509 5.6823 21 14 10.0218 8.5543 3.9500 22 1 9.7864 8.5996 2.4845 23 1 10.0949 9.9386 4.4822 24 1 11.2999 7.8498 4.2245 25 6 6.1607 3.5556 5.7000 26 6 5.3293 2.5410 4.8872 27 1 5.8251 1.5703 4.8879 28 6 3.9302 2.4109 5.4927 29 1 -0.3633 0.4351 -0.9310 30 1 -0.3632 -1.0239 0.0886 31 1 -0.3634 0.5886 0.8423 32 1 1.7604 1.8144 0.9309 33 1 1.6203 1.8768 -0.8424 34 1 3.7835 0.7580 -1.0939 35 1 3.9107 0.5426 0.6684 36 1 5.1211 5.3013 -1.1638 37 1 5.5273 5.0504 1.4808 38 1 5.2421 5.1717 3.5836 39 1 6.4566 4.4465 2.4863 40 1 6.8229 6.0780 5.7612 41 1 8.0656 9.1731 5.9188 42 1 6.8321 3.0412 6.3876 43 1 5.5119 4.2451 6.2403 44 1 3.4338 3.3810 5.4722 45 1 3.3491 1.6931 4.9137 46 1 4.0111 2.0657 6.5234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989012519.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:55 Heat of formation + Delta-G solvation = 30.323664 kcal Electronic energy + Delta-G solvation = -27945.649657 eV Core-core repulsion = 24066.455658 eV Total energy + Delta-G solvation = -3879.193999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.57546 -39.82660 -38.23763 -37.42353 -34.36395 -33.94545 -32.39601 -31.46504 -30.06766 -29.45357 -28.48308 -26.58971 -25.71194 -24.32554 -23.69167 -23.08088 -21.91222 -20.63986 -20.15081 -19.17407 -17.40037 -17.24952 -16.72638 -16.56686 -16.33949 -15.90063 -15.72349 -15.09830 -14.82362 -14.51277 -14.13891 -13.97730 -13.91542 -13.69828 -13.33623 -13.06350 -12.88020 -12.55814 -12.40637 -12.31845 -12.19179 -11.80060 -11.72635 -11.58657 -11.20150 -11.07120 -10.92048 -10.71396 -10.54762 -10.35510 -10.07140 -10.01818 -9.88672 -9.78458 -9.25488 -9.05569 -9.00046 -8.45606 -7.14470 -5.89960 -3.21682 1.27027 2.14940 2.62077 3.05173 3.27459 3.37560 3.43042 3.43364 3.70206 4.38083 4.43185 4.53380 4.65239 4.85470 4.96969 5.01012 5.04039 5.05476 5.07013 5.16892 5.20512 5.35055 5.40293 5.43588 5.49604 5.51425 5.62028 5.69620 5.71265 5.76948 5.82845 6.03113 6.08331 6.12958 6.28129 6.37851 6.39731 6.50975 6.57126 6.63638 6.77494 6.78996 7.58778 7.62198 7.99666 8.19799 8.27902 9.39570 9.92180 10.27433 11.31640 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.003281 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.932759 B = 8531.109647 C = 9833.190989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.057 3.943 4 C 0.122 3.878 5 N -0.261 5.261 6 N -0.282 5.282 7 C -0.001 4.001 8 C -0.191 4.191 9 C -0.031 4.031 10 C 0.600 3.400 11 O -0.550 6.550 12 N -0.591 5.591 13 C 0.057 3.943 14 C 0.172 3.828 15 H 0.066 0.934 16 N -0.710 5.710 17 C -0.252 4.252 18 H 0.072 0.928 19 C -0.006 4.006 20 N -0.928 5.928 21 Si 0.908 3.092 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.137 4.137 26 C 0.142 3.858 27 H 0.075 0.925 28 C -0.161 4.161 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.125 0.875 36 H 0.188 0.812 37 H 0.181 0.819 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.387 0.613 41 H 0.258 0.742 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.246 -12.741 -8.076 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.303 6.303 3 C -0.021 4.021 4 C 0.002 3.998 5 N -0.050 5.050 6 N -0.114 5.114 7 C -0.178 4.178 8 C -0.219 4.219 9 C -0.158 4.158 10 C 0.388 3.612 11 O -0.430 6.430 12 N -0.323 5.323 13 C -0.068 4.068 14 C 0.060 3.940 15 H 0.084 0.916 16 N -0.350 5.350 17 C -0.382 4.382 18 H 0.090 0.910 19 C -0.203 4.203 20 N -0.575 5.575 21 Si 0.738 3.262 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.211 1.211 25 C -0.176 4.176 26 C 0.039 3.961 27 H 0.093 0.907 28 C -0.220 4.220 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.143 0.857 36 H 0.205 0.795 37 H 0.198 0.802 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.222 0.778 41 H 0.068 0.932 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.805 -14.074 -9.070 20.487 hybrid contribution 0.639 1.567 0.369 1.732 sum -11.166 -12.508 -8.701 18.890 Atomic orbital electron populations 1.22767 0.80258 1.03003 1.00198 1.87797 1.20265 1.26687 1.95531 1.22626 0.92614 0.85489 1.01347 1.21771 0.92526 0.79131 1.06415 1.45426 1.42242 1.13818 1.03555 1.73176 1.19361 1.01969 1.16850 1.23671 1.02593 0.96901 0.94599 1.23136 1.05052 0.96699 0.97038 1.21383 1.08757 0.96218 0.89432 1.16511 0.79018 0.83715 0.82006 1.90757 1.45661 1.22561 1.84031 1.48262 1.52166 1.22997 1.08865 1.24062 0.95939 0.83473 1.03322 1.21323 0.93900 0.88185 0.90625 0.91560 1.42307 1.38578 1.12112 1.42043 1.19192 1.06730 0.93866 1.18455 0.90963 1.24779 0.99379 0.96816 0.99284 1.69647 1.41090 1.12423 1.34375 0.86272 0.81916 0.78987 0.79018 1.21008 1.21662 1.21146 1.23029 0.98706 0.97671 0.98170 1.21556 0.96572 0.97719 0.80221 0.90657 1.22142 0.96594 1.02483 1.00736 0.93952 0.89240 0.93790 0.92305 0.92578 0.87872 0.85674 0.79506 0.80192 0.90659 0.89626 0.77821 0.93232 0.90130 0.90194 0.92465 0.91512 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.47 10.70 -35.23 -0.38 -4.84 16 3 C 0.06 0.67 6.26 37.16 0.23 0.90 16 4 C 0.12 1.51 6.20 -4.04 -0.03 1.49 16 5 N -0.26 -3.72 3.35 -57.13 -0.19 -3.91 16 6 N -0.28 -4.01 11.90 30.59 0.36 -3.64 16 7 C 0.00 -0.01 12.03 -17.43 -0.21 -0.22 16 8 C -0.19 -2.71 9.30 -38.98 -0.36 -3.08 16 9 C -0.03 -0.46 6.91 -82.06 -0.57 -1.03 16 10 C 0.60 9.60 7.62 -12.64 -0.10 9.50 16 11 O -0.55 -9.46 13.72 5.25 0.07 -9.39 16 12 N -0.59 -9.00 3.07 -164.34 -0.50 -9.51 16 13 C 0.06 0.92 5.00 -2.51 -0.01 0.91 16 14 C 0.17 3.03 3.69 -65.78 -0.24 2.78 16 15 H 0.07 1.20 8.12 -51.93 -0.42 0.77 16 16 N -0.71 -15.92 5.26 -51.35 -0.27 -16.19 16 17 C -0.25 -6.36 9.98 -15.06 -0.15 -6.52 16 18 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 20 N -0.93 -26.25 13.06 55.49 0.72 -25.53 16 21 Si 0.91 21.07 29.55 -169.99 -5.02 16.04 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C -0.14 -2.00 6.11 -24.91 -0.15 -2.15 16 26 C 0.14 1.99 3.47 -66.95 -0.23 1.76 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 C -0.16 -2.09 9.10 37.16 0.34 -1.76 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.13 1.69 6.26 -51.93 -0.33 1.36 16 36 H 0.19 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.18 2.52 4.90 -52.49 -0.26 2.26 16 38 H 0.08 1.28 8.06 -51.93 -0.42 0.86 16 39 H 0.09 1.36 5.26 -51.93 -0.27 1.09 16 40 H 0.39 9.28 7.73 -40.82 -0.32 8.97 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.19 7.71 -51.93 -0.40 0.79 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.95 6.86 -51.93 -0.36 0.59 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -29.94 374.61 -6.99 -36.92 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -6.96 Total: 10.65 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -0.46 Total: 3.74 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.12 Total: -58.77 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.31 Total: -14.24 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.94 -6.99 -36.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989012519.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.248 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds