Wall clock time and date at job start Tue Mar 31 2020 14:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00059 * 2 1 4 4 C 1.53000 * 109.46719 * 184.99171 * 3 2 1 5 5 N 1.46501 * 109.47061 * 184.99403 * 4 3 2 6 6 N 1.28446 * 125.19014 * 274.70812 * 5 4 3 7 7 C 1.30865 * 110.92923 * 180.02562 * 6 5 4 8 8 C 1.39671 * 107.86169 * 359.77496 * 7 6 5 9 9 C 1.36596 * 125.19356 * 94.72729 * 5 4 3 10 10 C 1.47169 * 126.88301 * 359.94328 * 9 5 4 11 11 O 1.21625 * 119.99834 * 354.35311 * 10 9 5 12 12 N 1.34771 * 120.00016 * 174.35227 * 10 9 5 13 13 C 1.47326 * 125.61826 * 5.45638 * 12 10 9 14 14 C 1.54317 * 107.12080 * 181.11043 * 13 12 10 15 15 H 1.09001 * 110.71981 * 263.52669 * 14 13 12 16 16 N 1.46496 * 110.72063 * 140.43165 * 14 13 12 17 17 C 1.36940 * 119.99984 * 84.71857 * 16 14 13 18 18 H 1.07994 * 120.00280 * 4.74454 * 17 16 14 19 19 C 1.38814 * 119.99882 * 184.74805 * 17 16 14 20 20 N 1.31617 * 120.00170 * 5.02159 * 19 17 16 21 21 Si 1.86802 * 120.00150 * 185.02416 * 19 17 16 22 22 H 1.48497 * 109.46838 * 59.99805 * 21 19 17 23 23 H 1.48501 * 109.47366 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47021 * 300.00108 * 21 19 17 25 25 C 1.55151 * 103.10489 * 21.97754 * 14 13 12 26 26 C 1.47430 * 125.65017 * 185.23651 * 12 10 9 27 27 H 1.09000 * 110.36097 * 274.74696 * 26 12 10 28 28 C 1.53003 * 110.36467 * 37.06687 * 26 12 10 29 29 H 1.08997 * 109.47447 * 64.98415 * 1 2 3 30 30 H 1.08999 * 109.47533 * 184.99204 * 1 2 3 31 31 H 1.09008 * 109.46643 * 304.99130 * 1 2 3 32 32 H 1.08997 * 109.47457 * 64.99146 * 3 2 1 33 33 H 1.09002 * 109.47291 * 304.98403 * 3 2 1 34 34 H 1.08997 * 109.47821 * 64.99393 * 4 3 2 35 35 H 1.09005 * 109.47409 * 304.98792 * 4 3 2 36 36 H 1.07995 * 126.06998 * 180.02562 * 7 6 5 37 37 H 1.08002 * 127.32531 * 180.28034 * 8 7 6 38 38 H 1.09001 * 110.05912 * 61.67890 * 13 12 10 39 39 H 1.09000 * 109.85047 * 300.42117 * 13 12 10 40 40 H 0.96998 * 120.00117 * 264.44611 * 16 14 13 41 41 H 0.97002 * 120.00675 * 179.97438 * 20 19 17 42 42 H 1.08995 * 111.00546 * 82.66040 * 25 14 13 43 43 H 1.09005 * 111.00835 * 206.47568 * 25 14 13 44 44 H 1.08995 * 109.47048 * 175.41307 * 28 26 12 45 45 H 1.09001 * 109.47178 * 295.41604 * 28 26 12 46 46 H 1.09004 * 109.46745 * 55.41229 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5305 1.1867 -0.1255 5 7 4.1356 2.5155 -0.0059 6 7 4.2875 3.3493 -0.9711 7 6 4.8591 4.4496 -0.5527 8 6 5.0952 4.3155 0.8174 9 6 4.6246 3.0568 1.1490 10 6 4.6420 2.4297 2.4803 11 8 4.0962 1.3568 2.6542 12 7 5.2627 3.0443 3.5066 13 6 5.8617 4.3897 3.4653 14 6 6.4772 4.6557 4.8552 15 1 5.7889 5.2259 5.4791 16 7 7.7591 5.3536 4.7294 17 6 7.7874 6.7176 4.6114 18 1 6.8719 7.2854 4.6879 19 6 8.9928 7.3705 4.3934 20 7 10.0931 6.6743 4.2015 21 14 9.0534 9.2375 4.3724 22 1 8.5930 9.7624 5.6830 23 1 10.4473 9.6848 4.1226 24 1 8.1683 9.7494 3.2955 25 6 6.6831 3.2285 5.4278 26 6 5.4506 2.4836 4.8571 27 1 4.5722 2.6760 5.4731 28 6 5.7269 0.9809 4.7760 29 1 -0.3634 0.4345 -0.9312 30 1 -0.3634 -1.0237 0.0894 31 1 -0.3633 0.5894 0.8420 32 1 1.7612 1.8141 0.9313 33 1 1.6198 1.8770 -0.8420 34 1 3.7827 0.7587 -1.0957 35 1 3.9112 0.5416 0.6663 36 1 5.1013 5.3104 -1.1583 37 1 5.5494 5.0396 1.4776 38 1 5.0948 5.1340 3.2509 39 1 6.6395 4.4253 2.7025 40 1 8.5880 4.8499 4.7337 41 1 10.9355 7.1304 4.0488 42 1 7.6101 2.7896 5.0590 43 1 6.6643 3.2382 6.5176 44 1 5.9437 0.5971 5.7728 45 1 4.8515 0.4717 4.3730 46 1 6.5825 0.8035 4.1243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989012520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:58 Heat of formation + Delta-G solvation = 29.116908 kcal Electronic energy + Delta-G solvation = -27994.643988 eV Core-core repulsion = 24115.397661 eV Total energy + Delta-G solvation = -3879.246328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.53001 -39.82692 -38.23000 -37.37920 -34.34147 -33.90349 -32.38760 -31.46912 -30.01499 -29.42771 -28.48922 -26.57919 -25.64142 -24.30116 -23.67584 -23.03652 -21.88582 -20.62543 -20.16416 -19.15693 -17.33459 -17.16227 -16.70550 -16.39224 -16.30696 -16.18738 -15.60664 -15.13911 -14.77463 -14.51323 -14.18471 -13.91077 -13.77478 -13.72383 -13.41415 -13.02844 -12.95350 -12.67738 -12.31686 -12.20388 -11.98221 -11.79640 -11.71857 -11.57779 -11.27769 -11.08415 -10.88795 -10.73332 -10.56570 -10.39471 -10.10577 -10.00716 -9.80674 -9.67824 -9.21084 -9.02114 -8.97256 -8.42285 -7.14998 -5.89198 -3.20922 1.30453 2.18165 2.65862 3.06688 3.31084 3.37392 3.42907 3.43567 3.71499 4.40675 4.45987 4.52639 4.66460 4.87806 4.98987 5.02091 5.05027 5.06152 5.07344 5.16302 5.23875 5.35145 5.41089 5.45583 5.50846 5.55357 5.61101 5.69769 5.76495 5.81590 5.88905 6.03625 6.07642 6.15279 6.34449 6.37793 6.43865 6.52825 6.62470 6.66720 6.79286 6.80840 7.58623 7.64239 8.03188 8.22873 8.28459 9.39732 9.92916 10.28115 11.32155 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016456 B = 0.003300 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.067433 B = 8483.144975 C = 9700.451551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.057 3.943 4 C 0.121 3.879 5 N -0.262 5.262 6 N -0.282 5.282 7 C -0.001 4.001 8 C -0.187 4.187 9 C -0.032 4.032 10 C 0.602 3.398 11 O -0.549 6.549 12 N -0.592 5.592 13 C 0.065 3.935 14 C 0.171 3.829 15 H 0.065 0.935 16 N -0.712 5.712 17 C -0.252 4.252 18 H 0.072 0.928 19 C -0.006 4.006 20 N -0.927 5.927 21 Si 0.907 3.093 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.284 1.284 25 C -0.136 4.136 26 C 0.141 3.859 27 H 0.076 0.924 28 C -0.162 4.162 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.188 0.812 37 H 0.178 0.822 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.387 0.613 41 H 0.258 0.742 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.795 -10.458 -5.248 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.303 6.303 3 C -0.021 4.021 4 C 0.001 3.999 5 N -0.051 5.051 6 N -0.114 5.114 7 C -0.178 4.178 8 C -0.215 4.215 9 C -0.160 4.160 10 C 0.389 3.611 11 O -0.429 6.429 12 N -0.325 5.325 13 C -0.061 4.061 14 C 0.059 3.941 15 H 0.083 0.917 16 N -0.352 5.352 17 C -0.383 4.383 18 H 0.090 0.910 19 C -0.203 4.203 20 N -0.574 5.574 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.210 1.210 25 C -0.175 4.175 26 C 0.038 3.962 27 H 0.094 0.906 28 C -0.220 4.220 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.145 0.855 36 H 0.205 0.795 37 H 0.195 0.805 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.221 0.779 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.491 -11.690 -6.183 20.368 hybrid contribution 0.534 1.747 0.459 1.883 sum -14.957 -9.943 -5.724 18.851 Atomic orbital electron populations 1.22767 0.80286 1.02993 1.00180 1.87800 1.20239 1.26709 1.95525 1.22626 0.92671 0.85460 1.01295 1.21786 0.92462 0.79207 1.06475 1.45411 1.42081 1.13698 1.03883 1.73171 1.19627 1.01687 1.16913 1.23657 1.02503 0.96987 0.94648 1.23078 1.04824 0.96534 0.97090 1.21401 1.08684 0.96254 0.89618 1.16504 0.78704 0.83906 0.81952 1.90717 1.46382 1.21988 1.83840 1.48348 1.54945 1.18519 1.10695 1.23801 0.97494 0.81078 1.03682 1.21213 0.90062 0.91190 0.91645 0.91690 1.42370 1.01473 1.04381 1.87001 1.19179 0.93676 0.82730 1.42744 0.90982 1.24777 0.95723 0.98002 1.01756 1.69665 0.98828 1.34464 1.54419 0.86280 0.76691 0.85341 0.77915 1.21179 1.21671 1.21019 1.23141 0.97151 0.96344 1.00834 1.21896 0.98116 0.94151 0.82016 0.90595 1.22123 1.03289 0.94733 1.01838 0.93956 0.89246 0.93817 0.92374 0.92571 0.87932 0.85540 0.79539 0.80467 0.91611 0.89764 0.77865 0.93241 0.90315 0.89916 0.91982 0.90112 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.47 10.70 -35.23 -0.38 -4.85 16 3 C 0.06 0.67 6.26 37.16 0.23 0.91 16 4 C 0.12 1.53 6.24 -4.04 -0.03 1.51 16 5 N -0.26 -3.82 3.35 -57.13 -0.19 -4.01 16 6 N -0.28 -4.13 11.90 30.59 0.36 -3.77 16 7 C 0.00 -0.02 12.03 -17.43 -0.21 -0.23 16 8 C -0.19 -2.76 9.44 -38.98 -0.37 -3.13 16 9 C -0.03 -0.50 6.92 -82.06 -0.57 -1.07 16 10 C 0.60 9.72 7.54 -12.64 -0.10 9.62 16 11 O -0.55 -9.35 12.54 5.26 0.07 -9.29 16 12 N -0.59 -9.13 3.25 -164.16 -0.53 -9.66 16 13 C 0.06 1.05 4.77 -2.90 -0.01 1.04 16 14 C 0.17 2.99 3.58 -66.11 -0.24 2.75 16 15 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 16 N -0.71 -16.02 5.17 -51.66 -0.27 -16.28 16 17 C -0.25 -6.38 9.97 -15.06 -0.15 -6.53 16 18 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 20 N -0.93 -26.36 13.08 55.49 0.73 -25.63 16 21 Si 0.91 21.06 29.56 -169.99 -5.02 16.04 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C -0.14 -1.99 6.11 -24.59 -0.15 -2.14 16 26 C 0.14 1.96 3.74 -66.41 -0.25 1.71 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 C -0.16 -2.14 8.66 37.16 0.32 -1.82 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.13 1.74 6.18 -51.93 -0.32 1.41 16 36 H 0.19 1.97 8.06 -52.49 -0.42 1.54 16 37 H 0.18 2.60 4.66 -52.49 -0.24 2.35 16 38 H 0.07 1.02 7.19 -51.93 -0.37 0.65 16 39 H 0.08 1.52 6.61 -51.93 -0.34 1.18 16 40 H 0.39 9.40 7.74 -40.82 -0.32 9.08 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.08 1.23 7.92 -51.93 -0.41 0.81 16 43 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 1.17 6.12 -51.93 -0.32 0.85 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -29.93 372.80 -7.06 -36.98 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -6.94 Total: 11.08 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -0.49 Total: 3.77 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.10 Total: -59.35 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.31 Total: -14.14 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.93 -7.06 -36.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989012520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.102 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds