Wall clock time and date at job start Tue Mar 31 2020 14:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99824 * 2 1 4 4 C 1.50698 * 109.46988 * 179.97438 * 3 2 1 5 5 N 1.30451 * 125.98874 * 90.02035 * 4 3 2 6 6 N 1.39931 * 108.89851 * 179.97438 * 5 4 3 7 7 C 1.46505 * 125.75796 * 180.02562 * 6 5 4 8 8 C 1.34260 * 108.49361 * 0.02562 * 6 5 4 9 9 C 1.38048 * 107.41394 * 359.76228 * 8 6 5 10 10 C 1.47427 * 126.41506 * 180.25635 * 9 8 6 11 11 O 1.21605 * 119.99804 * 145.65190 * 10 9 8 12 12 N 1.34775 * 119.99917 * 325.65189 * 10 9 8 13 13 C 1.47423 * 125.65235 * 4.41293 * 12 10 9 14 14 C 1.54903 * 104.83567 * 204.09052 * 13 12 10 15 15 H 1.09000 * 111.01059 * 204.87649 * 14 13 12 16 16 N 1.46506 * 111.00117 * 81.06790 * 14 13 12 17 17 C 1.36936 * 120.00347 * 86.45136 * 16 14 13 18 18 H 1.07999 * 119.99713 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00130 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00012 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00137 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47422 * 90.00264 * 21 19 17 23 23 H 1.48496 * 109.47497 * 210.00367 * 21 19 17 24 24 H 1.48504 * 109.46998 * 330.00427 * 21 19 17 25 25 C 1.55158 * 101.58514 * 322.99420 * 14 13 12 26 26 C 1.47028 * 125.64632 * 184.10934 * 12 10 9 27 27 H 1.08996 * 109.88728 * 59.55933 * 26 12 10 28 28 C 1.53007 * 109.88016 * 298.39094 * 26 12 10 29 29 H 1.09000 * 109.47402 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47081 * 299.99941 * 1 2 3 31 31 H 1.08999 * 109.47321 * 60.00561 * 1 2 3 32 32 H 1.08997 * 109.47414 * 59.99719 * 3 2 1 33 33 H 1.09000 * 109.47194 * 299.99577 * 3 2 1 34 34 H 1.08993 * 109.47216 * 90.02440 * 7 6 5 35 35 H 1.09004 * 109.47202 * 210.02884 * 7 6 5 36 36 H 1.09002 * 109.46605 * 330.02552 * 7 6 5 37 37 H 1.08000 * 126.29533 * 180.02562 * 8 6 5 38 38 H 1.08999 * 110.36620 * 322.93664 * 13 12 10 39 39 H 1.09002 * 110.36407 * 85.25120 * 13 12 10 40 40 H 0.97003 * 119.99666 * 266.44990 * 16 14 13 41 41 H 0.97005 * 119.99970 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.72096 * 153.86213 * 25 14 13 43 43 H 1.08996 * 110.71746 * 276.95923 * 25 14 13 44 44 H 1.09000 * 109.47013 * 61.45518 * 28 26 12 45 45 H 1.08998 * 109.46687 * 181.45509 * 28 26 12 46 46 H 1.08997 * 109.46933 * 301.45658 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2771 1.1262 -1.0546 6 7 5.6103 1.0211 -0.6428 7 6 6.7748 0.9298 -1.5271 8 6 5.6425 1.0181 0.6994 9 6 4.3401 1.1259 1.1442 10 6 3.8957 1.1676 2.5492 11 8 2.9346 1.8433 2.8631 12 7 4.5546 0.4570 3.4858 13 6 5.7832 -0.3269 3.2632 14 6 5.7812 -1.3946 4.3854 15 1 6.7935 -1.7360 4.6018 16 7 4.9135 -2.5221 4.0359 17 6 5.4066 -3.5610 3.2925 18 1 6.4354 -3.5494 2.9642 19 6 4.5846 -4.6295 2.9619 20 7 3.3309 -4.6439 3.3625 21 14 5.2575 -6.0470 1.9484 22 1 5.8188 -7.0809 2.8546 23 1 4.1631 -6.6400 1.1386 24 1 6.3258 -5.5470 1.0461 25 6 5.1971 -0.5921 5.5780 26 6 4.1707 0.3402 4.9003 27 1 3.1727 -0.0907 4.9792 28 6 4.1994 1.7191 5.5628 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 7.1445 1.9315 -1.7456 35 1 7.5586 0.3520 -1.0372 36 1 6.4876 0.4377 -2.4563 37 1 6.5253 0.9487 1.3176 38 1 5.7556 -0.8054 2.2842 39 1 6.6618 0.3124 3.3493 40 1 3.9895 -2.5327 4.3312 41 1 2.7563 -5.3904 3.1311 42 1 4.7067 -1.2583 6.2878 43 1 5.9770 -0.0120 6.0712 44 1 3.4805 2.3738 5.0701 45 1 3.9390 1.6212 6.6167 46 1 5.1989 2.1444 5.4734 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989059267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:25 Heat of formation + Delta-G solvation = 22.275109 kcal Electronic energy + Delta-G solvation = -28732.546813 eV Core-core repulsion = 24853.003803 eV Total energy + Delta-G solvation = -3879.543010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.33767 -39.42117 -37.58272 -37.03532 -33.92444 -33.53980 -31.98270 -31.26520 -29.78442 -28.82169 -28.37834 -26.44413 -25.52454 -24.97847 -23.74982 -22.81574 -21.20011 -20.40090 -19.53296 -18.73812 -17.26362 -16.82085 -16.37465 -16.21920 -15.78918 -15.53082 -15.33887 -14.99199 -14.54603 -14.49886 -13.84667 -13.70587 -13.57185 -13.14527 -13.10100 -12.85344 -12.66226 -12.54314 -12.15663 -12.13899 -11.96113 -11.79192 -11.61913 -11.20741 -11.12011 -10.92173 -10.81275 -10.68337 -10.61124 -10.28996 -9.97868 -9.69858 -9.60862 -9.38154 -9.28205 -8.98859 -8.51158 -8.09501 -6.98743 -5.78270 -3.08295 1.70659 2.21662 2.38531 3.35427 3.41591 3.45775 3.49173 3.73638 4.14327 4.49585 4.55906 4.71674 4.93045 4.99015 5.00093 5.18698 5.21271 5.26151 5.34809 5.41757 5.50933 5.54613 5.55086 5.62521 5.64557 5.67649 5.73662 5.84627 5.88962 5.91854 5.95784 6.03399 6.22432 6.27848 6.45453 6.47892 6.49454 6.65168 6.74050 6.83934 6.95630 7.33217 7.65156 7.65796 8.07387 8.38829 8.69793 9.50640 10.06487 10.40693 11.43725 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008404 B = 0.005410 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3330.869514 B = 5173.892779 C = 6010.138847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.138 3.862 4 C 0.127 3.873 5 N -0.284 5.284 6 N -0.362 5.362 7 C 0.099 3.901 8 C 0.096 3.904 9 C -0.256 4.256 10 C 0.613 3.387 11 O -0.554 6.554 12 N -0.592 5.592 13 C 0.065 3.935 14 C 0.169 3.831 15 H 0.069 0.931 16 N -0.710 5.710 17 C -0.247 4.247 18 H 0.070 0.930 19 C -0.006 4.006 20 N -0.925 5.925 21 Si 0.905 3.095 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.283 1.283 25 C -0.137 4.137 26 C 0.141 3.859 27 H 0.073 0.927 28 C -0.159 4.159 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.038 0.962 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.184 0.816 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.195 14.305 -3.886 15.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.296 6.296 3 C 0.060 3.940 4 C -0.041 4.041 5 N -0.107 5.107 6 N -0.141 5.141 7 C -0.042 4.042 8 C -0.054 4.054 9 C -0.271 4.271 10 C 0.402 3.598 11 O -0.434 6.434 12 N -0.324 5.324 13 C -0.061 4.061 14 C 0.057 3.943 15 H 0.087 0.913 16 N -0.350 5.350 17 C -0.378 4.378 18 H 0.088 0.912 19 C -0.203 4.203 20 N -0.572 5.572 21 Si 0.736 3.264 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.209 1.209 25 C -0.176 4.176 26 C 0.038 3.962 27 H 0.092 0.908 28 C -0.217 4.217 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.201 0.799 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.995 14.354 -5.247 16.078 hybrid contribution 0.050 -0.762 0.203 0.790 sum 5.045 13.592 -5.044 15.350 Atomic orbital electron populations 1.22734 0.80636 1.03023 0.99728 1.88010 1.19804 1.26328 1.95413 1.20702 0.85201 0.85993 1.02105 1.21810 0.95442 0.97657 0.89165 1.77077 0.86454 1.24609 1.22553 1.48210 1.06127 1.54918 1.04848 1.21965 0.84042 1.03337 0.94867 1.23159 0.99126 0.98229 0.84875 1.20112 0.92299 1.20232 0.94438 1.16770 0.81744 0.78388 0.82865 1.90668 1.28486 1.42639 1.81578 1.48181 1.27444 1.48044 1.08770 1.23491 0.85038 0.93765 1.03824 1.21314 0.95390 0.87308 0.90315 0.91314 1.42309 1.11273 1.18238 1.63164 1.19150 0.95610 0.97075 1.25955 0.91174 1.24742 0.95787 0.98776 1.01037 1.69663 1.05288 1.32239 1.49997 0.86236 0.77628 0.82723 0.79800 1.21678 1.21771 1.20854 1.23035 0.98281 0.97812 0.98469 1.21449 0.99141 0.95366 0.80266 0.90844 1.22141 1.02043 0.97358 1.00172 0.89376 0.93758 0.94328 0.89424 0.92089 0.90483 0.88943 0.88899 0.79886 0.90063 0.93107 0.77962 0.93411 0.89831 0.90798 0.91336 0.92186 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 11.01 101.05 1.11 1.61 16 2 O -0.38 -7.14 10.69 -35.23 -0.38 -7.52 16 3 C 0.14 2.34 6.30 36.00 0.23 2.57 16 4 C 0.13 2.31 6.89 -82.02 -0.56 1.75 16 5 N -0.28 -4.86 12.50 33.89 0.42 -4.44 16 6 N -0.36 -5.05 3.98 -67.59 -0.27 -5.32 16 7 C 0.10 0.83 11.44 59.85 0.68 1.52 16 8 C 0.10 1.39 9.55 -16.56 -0.16 1.23 16 9 C -0.26 -4.60 5.66 -105.07 -0.60 -5.19 16 10 C 0.61 11.83 7.49 -12.52 -0.09 11.73 16 11 O -0.55 -11.61 14.40 5.27 0.08 -11.54 16 12 N -0.59 -10.55 3.06 -164.26 -0.50 -11.05 16 13 C 0.07 1.08 5.05 -2.53 -0.01 1.07 16 14 C 0.17 3.08 3.69 -65.78 -0.24 2.83 16 15 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 16 N -0.71 -17.06 5.27 -51.35 -0.27 -17.33 16 17 C -0.25 -6.60 9.98 -15.06 -0.15 -6.75 16 18 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 20 N -0.92 -27.97 13.06 55.49 0.72 -27.24 16 21 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.14 -2.09 6.05 -24.89 -0.15 -2.24 16 26 C 0.14 2.34 3.48 -66.94 -0.23 2.11 16 27 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 28 C -0.16 -2.24 9.11 37.16 0.34 -1.90 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 1.50 6.62 -51.93 -0.34 1.16 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.18 2.03 6.49 -52.49 -0.34 1.69 16 38 H 0.08 1.53 6.60 -51.93 -0.34 1.18 16 39 H 0.05 0.66 7.71 -51.93 -0.40 0.26 16 40 H 0.39 10.23 7.82 -40.82 -0.32 9.91 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 44 H 0.07 1.10 6.75 -51.93 -0.35 0.74 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -35.63 378.69 -6.57 -42.20 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.12 Total: 9.23 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 0.07 Total: 10.04 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: 0.11 Total: -65.38 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.30 Total: -19.05 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.63 -6.57 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989059267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.478 kcal (2) G-P(sol) polarization free energy of solvation -35.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds