Wall clock time and date at job start Tue Mar 31 2020 14:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99824 * 2 1 4 4 C 1.50698 * 109.46988 * 179.97438 * 3 2 1 5 5 N 1.30451 * 125.98874 * 90.02035 * 4 3 2 6 6 N 1.39931 * 108.89851 * 179.97438 * 5 4 3 7 7 C 1.46505 * 125.75796 * 180.02562 * 6 5 4 8 8 C 1.34260 * 108.49361 * 0.02562 * 6 5 4 9 9 C 1.38048 * 107.41394 * 359.76228 * 8 6 5 10 10 C 1.47427 * 126.41506 * 180.25635 * 9 8 6 11 11 O 1.21605 * 119.99804 * 145.65190 * 10 9 8 12 12 N 1.34775 * 119.99917 * 325.65189 * 10 9 8 13 13 C 1.47423 * 125.65235 * 4.41293 * 12 10 9 14 14 C 1.54903 * 104.83567 * 204.09052 * 13 12 10 15 15 H 1.09000 * 111.01059 * 204.87649 * 14 13 12 16 16 N 1.46506 * 111.00117 * 81.06790 * 14 13 12 17 17 C 1.36936 * 120.00347 * 86.45136 * 16 14 13 18 18 H 1.07999 * 119.99713 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00130 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00012 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00137 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47422 * 90.00264 * 21 19 17 23 23 H 1.48496 * 109.47497 * 210.00367 * 21 19 17 24 24 H 1.48504 * 109.46998 * 330.00427 * 21 19 17 25 25 C 1.55158 * 101.58514 * 322.99420 * 14 13 12 26 26 C 1.47028 * 125.64632 * 184.10934 * 12 10 9 27 27 H 1.08996 * 109.88728 * 59.55933 * 26 12 10 28 28 C 1.53007 * 109.88016 * 298.39094 * 26 12 10 29 29 H 1.09000 * 109.47402 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47081 * 299.99941 * 1 2 3 31 31 H 1.08999 * 109.47321 * 60.00561 * 1 2 3 32 32 H 1.08997 * 109.47414 * 59.99719 * 3 2 1 33 33 H 1.09000 * 109.47194 * 299.99577 * 3 2 1 34 34 H 1.08993 * 109.47216 * 90.02440 * 7 6 5 35 35 H 1.09004 * 109.47202 * 210.02884 * 7 6 5 36 36 H 1.09002 * 109.46605 * 330.02552 * 7 6 5 37 37 H 1.08000 * 126.29533 * 180.02562 * 8 6 5 38 38 H 1.08999 * 110.36620 * 322.93664 * 13 12 10 39 39 H 1.09002 * 110.36407 * 85.25120 * 13 12 10 40 40 H 0.97003 * 119.99666 * 266.44990 * 16 14 13 41 41 H 0.97005 * 119.99970 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.72096 * 153.86213 * 25 14 13 43 43 H 1.08996 * 110.71746 * 276.95923 * 25 14 13 44 44 H 1.09000 * 109.47013 * 61.45518 * 28 26 12 45 45 H 1.08998 * 109.46687 * 181.45509 * 28 26 12 46 46 H 1.08997 * 109.46933 * 301.45658 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2771 1.1262 -1.0546 6 7 5.6103 1.0211 -0.6428 7 6 6.7748 0.9298 -1.5271 8 6 5.6425 1.0181 0.6994 9 6 4.3401 1.1259 1.1442 10 6 3.8957 1.1676 2.5492 11 8 2.9346 1.8433 2.8631 12 7 4.5546 0.4570 3.4858 13 6 5.7832 -0.3269 3.2632 14 6 5.7812 -1.3946 4.3854 15 1 6.7935 -1.7360 4.6018 16 7 4.9135 -2.5221 4.0359 17 6 5.4066 -3.5610 3.2925 18 1 6.4354 -3.5494 2.9642 19 6 4.5846 -4.6295 2.9619 20 7 3.3309 -4.6439 3.3625 21 14 5.2575 -6.0470 1.9484 22 1 5.8188 -7.0809 2.8546 23 1 4.1631 -6.6400 1.1386 24 1 6.3258 -5.5470 1.0461 25 6 5.1971 -0.5921 5.5780 26 6 4.1707 0.3402 4.9003 27 1 3.1727 -0.0907 4.9792 28 6 4.1994 1.7191 5.5628 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 7.1445 1.9315 -1.7456 35 1 7.5586 0.3520 -1.0372 36 1 6.4876 0.4377 -2.4563 37 1 6.5253 0.9487 1.3176 38 1 5.7556 -0.8054 2.2842 39 1 6.6618 0.3124 3.3493 40 1 3.9895 -2.5327 4.3312 41 1 2.7563 -5.3904 3.1311 42 1 4.7067 -1.2583 6.2878 43 1 5.9770 -0.0120 6.0712 44 1 3.4805 2.3738 5.0701 45 1 3.9390 1.6212 6.6167 46 1 5.1989 2.1444 5.4734 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989059267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:24 Heat of formation + Delta-G solvation = -4.273494 kcal Electronic energy + Delta-G solvation = -28733.698047 eV Core-core repulsion = 24853.003803 eV Total energy + Delta-G solvation = -3880.694244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.52936 -40.78421 -38.90301 -38.49166 -35.73956 -34.61842 -33.34352 -33.00104 -30.96971 -30.05808 -29.93553 -27.52930 -26.79109 -26.18181 -25.66756 -24.10863 -22.40347 -21.79801 -20.82662 -20.03910 -19.21084 -18.11984 -17.69384 -17.53086 -17.11660 -16.78783 -16.47969 -16.30413 -16.16663 -15.83044 -15.37847 -15.28258 -14.94275 -14.69926 -14.28115 -14.01451 -13.73426 -13.56549 -13.38272 -13.27629 -13.21449 -13.12870 -13.05279 -12.83965 -12.68593 -12.41009 -12.25021 -12.20526 -11.99385 -11.96368 -11.60462 -11.44604 -11.01932 -10.91119 -10.63032 -10.52266 -9.76813 -9.49826 -8.91472 -7.90456 -5.18254 0.56795 0.90010 1.39538 1.46288 1.48500 1.55666 1.97797 2.40851 2.57632 2.95977 3.37074 3.41891 3.64868 3.68996 3.91288 3.97541 3.98598 4.10363 4.19349 4.23804 4.31658 4.41186 4.43629 4.43846 4.46724 4.49724 4.54643 4.69073 4.74434 4.75870 4.78126 4.81382 4.83288 5.00083 5.16299 5.22696 5.25786 5.29682 5.42613 5.57506 5.62035 5.88014 6.09835 6.30433 6.43712 6.69446 7.28666 7.36837 8.13758 8.34682 9.33340 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008404 B = 0.005410 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3330.869514 B = 5173.892779 C = 6010.138847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.417 6.417 3 C 0.140 3.860 4 C 0.101 3.899 5 N -0.305 5.305 6 N -0.354 5.354 7 C 0.085 3.915 8 C 0.116 3.884 9 C -0.297 4.297 10 C 0.605 3.395 11 O -0.585 6.585 12 N -0.595 5.595 13 C 0.073 3.927 14 C 0.155 3.845 15 H 0.090 0.910 16 N -0.726 5.726 17 C -0.229 4.229 18 H 0.087 0.913 19 C -0.079 4.079 20 N -0.971 5.971 21 Si 0.965 3.035 22 H -0.285 1.285 23 H -0.308 1.308 24 H -0.265 1.265 25 C -0.121 4.121 26 C 0.135 3.865 27 H 0.034 0.966 28 C -0.146 4.146 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.222 0.778 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.368 0.632 41 H 0.246 0.754 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.043 0.957 45 H 0.080 0.920 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.908 15.411 -4.082 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.336 6.336 3 C 0.062 3.938 4 C -0.066 4.066 5 N -0.129 5.129 6 N -0.132 5.132 7 C -0.053 4.053 8 C -0.036 4.036 9 C -0.312 4.312 10 C 0.395 3.605 11 O -0.467 6.467 12 N -0.327 5.327 13 C -0.052 4.052 14 C 0.046 3.954 15 H 0.108 0.892 16 N -0.364 5.364 17 C -0.361 4.361 18 H 0.105 0.895 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.795 3.205 22 H -0.212 1.212 23 H -0.235 1.235 24 H -0.190 1.190 25 C -0.159 4.159 26 C 0.032 3.968 27 H 0.052 0.948 28 C -0.204 4.204 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.140 0.860 36 H 0.112 0.888 37 H 0.238 0.762 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.199 0.801 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.135 0.865 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.792 15.494 -5.459 18.633 hybrid contribution -1.011 -1.029 0.258 1.466 sum 7.781 14.465 -5.200 17.229 Atomic orbital electron populations 1.22924 0.78732 1.03681 1.01283 1.87940 1.22177 1.27789 1.95664 1.20715 0.85267 0.85319 1.02469 1.22052 0.96091 0.98606 0.89833 1.76989 0.88067 1.25265 1.22588 1.48693 1.06203 1.52833 1.05515 1.22484 0.82697 1.05695 0.94460 1.23605 0.98894 0.95757 0.85318 1.20226 0.94072 1.23181 0.93683 1.17092 0.81474 0.78234 0.83698 1.90633 1.29791 1.44132 1.82183 1.48284 1.27819 1.47567 1.08999 1.23451 0.86268 0.93806 1.01667 1.21696 0.95390 0.86299 0.92053 0.89186 1.42550 1.11172 1.19684 1.63029 1.19635 0.95880 0.96854 1.23744 0.89539 1.25525 0.96215 1.01813 1.03512 1.69841 1.06801 1.32851 1.52680 0.85258 0.76777 0.80009 0.78459 1.21214 1.23548 1.19011 1.22974 0.98609 0.97155 0.97160 1.21530 0.97783 0.97083 0.80379 0.94759 1.22020 1.02588 0.95058 1.00724 0.89212 0.93521 0.91401 0.90682 0.89893 0.87749 0.85983 0.88786 0.76152 0.92223 0.87840 0.80103 0.94528 0.90766 0.86464 0.93830 0.90104 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.11 16 2 O -0.42 -16.50 10.69 -148.98 -1.59 -18.09 16 3 C 0.14 4.95 6.30 71.24 0.45 5.40 16 4 C 0.10 3.73 6.89 43.51 0.30 4.03 16 5 N -0.30 -10.28 12.50 -46.68 -0.58 -10.87 16 6 N -0.35 -9.05 3.98 -367.76 -1.46 -10.52 16 7 C 0.09 1.12 11.44 127.77 1.46 2.59 16 8 C 0.12 3.06 9.55 84.28 0.81 3.87 16 9 C -0.30 -10.58 5.66 -20.15 -0.11 -10.70 16 10 C 0.60 23.58 7.49 86.66 0.65 24.23 16 11 O -0.59 -25.60 14.40 -4.05 -0.06 -25.66 16 12 N -0.60 -20.61 3.06 -791.87 -2.43 -23.04 16 13 C 0.07 2.19 5.05 86.85 0.44 2.63 16 14 C 0.16 5.23 3.69 46.38 0.17 5.40 16 15 H 0.09 2.71 8.13 -2.39 -0.02 2.69 16 16 N -0.73 -34.62 5.27 -316.38 -1.67 -36.28 16 17 C -0.23 -12.06 9.98 84.03 0.84 -11.22 16 18 H 0.09 4.19 7.83 -2.91 -0.02 4.16 16 19 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 20 N -0.97 -60.76 13.06 21.65 0.28 -60.47 16 21 Si 0.96 46.10 29.55 68.60 2.03 48.13 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 23 H -0.31 -15.40 7.11 99.48 0.71 -14.69 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 C -0.12 -3.36 6.05 31.79 0.19 -3.17 16 26 C 0.14 4.39 3.48 45.35 0.16 4.55 16 27 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 28 C -0.15 -3.85 9.11 71.98 0.66 -3.20 16 29 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 2.76 6.62 -2.39 -0.02 2.75 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.22 3.84 6.49 -2.91 -0.02 3.82 16 38 H 0.06 2.08 6.60 -2.39 -0.02 2.07 16 39 H 0.10 2.07 7.71 -2.39 -0.02 2.06 16 40 H 0.37 20.04 7.82 -92.71 -0.72 19.32 16 41 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.12 2.31 7.85 -2.39 -0.02 2.29 16 44 H 0.04 1.38 6.75 -2.39 -0.02 1.36 16 45 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -82.48 378.69 2.50 -79.98 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.27 Total: 34.31 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 7.72 Total: 22.50 kcal Atomic # 7 Polarization: -135.32 SS G_CDS: -5.86 Total: -141.18 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -1.65 Total: -43.75 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -82.48 2.50 -79.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989059267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.705 kcal (2) G-P(sol) polarization free energy of solvation -82.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds