Wall clock time and date at job start Tue Mar 31 2020 14:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99811 * 2 1 4 4 C 1.50696 * 109.47010 * 179.97438 * 3 2 1 5 5 N 1.30439 * 125.99183 * 270.14178 * 4 3 2 6 6 N 1.39935 * 108.89912 * 180.25914 * 5 4 3 7 7 C 1.46499 * 125.75305 * 179.77025 * 6 5 4 8 8 C 1.34259 * 108.49396 * 359.75404 * 6 5 4 9 9 C 1.38045 * 107.41143 * 359.97438 * 8 6 5 10 10 C 1.47434 * 126.41216 * 179.97438 * 9 8 6 11 11 O 1.21606 * 120.00149 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99778 * 0.02562 * 10 9 8 13 13 C 1.47025 * 125.65167 * 359.97438 * 12 10 9 14 14 C 1.54324 * 107.27206 * 178.97359 * 13 12 10 15 15 H 1.09000 * 110.72054 * 96.34854 * 14 13 12 16 16 N 1.46505 * 110.71897 * 219.44371 * 14 13 12 17 17 C 1.36931 * 119.99788 * 271.15747 * 16 14 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31617 * 119.99873 * 180.27450 * 19 17 16 21 21 Si 1.86800 * 120.00209 * 0.27770 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99559 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00079 * 21 19 17 24 24 H 1.48507 * 109.46904 * 329.99901 * 21 19 17 25 25 C 1.55154 * 103.10250 * 337.89245 * 14 13 12 26 26 C 1.47427 * 125.64517 * 180.02562 * 12 10 9 27 27 H 1.09003 * 110.36511 * 85.15548 * 26 12 10 28 28 C 1.52995 * 110.37009 * 322.93515 * 26 12 10 29 29 H 1.08998 * 109.47042 * 300.00337 * 1 2 3 30 30 H 1.08997 * 109.46903 * 60.00243 * 1 2 3 31 31 H 1.09000 * 109.46750 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47443 * 59.99696 * 3 2 1 33 33 H 1.09000 * 109.46977 * 299.99693 * 3 2 1 34 34 H 1.09004 * 109.47504 * 269.97573 * 7 6 5 35 35 H 1.08999 * 109.47169 * 29.98358 * 7 6 5 36 36 H 1.09006 * 109.46878 * 149.98056 * 7 6 5 37 37 H 1.07995 * 126.29387 * 179.97438 * 8 6 5 38 38 H 1.09002 * 109.87719 * 59.55418 * 13 12 10 39 39 H 1.08995 * 110.00957 * 298.46357 * 13 12 10 40 40 H 0.97000 * 119.99792 * 91.15541 * 16 14 13 41 41 H 0.97000 * 120.00553 * 180.02562 * 20 19 17 42 42 H 1.09004 * 111.00655 * 153.48811 * 25 14 13 43 43 H 1.08998 * 111.00825 * 277.33950 * 25 14 13 44 44 H 1.09001 * 109.46840 * 61.45759 * 28 26 12 45 45 H 1.09000 * 109.46990 * 181.45095 * 28 26 12 46 46 H 1.09002 * 109.47223 * 301.45248 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2760 1.1236 1.0563 6 7 5.6101 1.0249 0.6456 7 6 6.7741 0.9374 1.5309 8 6 5.6435 1.0236 -0.6965 9 6 4.3406 1.1201 -1.1423 10 6 3.8968 1.1546 -2.5478 11 8 2.7125 1.2427 -2.8095 12 7 4.8037 1.0886 -3.5426 13 6 6.2597 0.9811 -3.3691 14 6 6.8850 0.9097 -4.7782 15 1 7.2206 1.8951 -5.1016 16 7 7.9933 -0.0480 -4.8055 17 6 9.2632 0.3657 -4.5037 18 1 9.4478 1.3979 -4.2450 19 6 10.3124 -0.5431 -4.5240 20 7 11.5322 -0.1466 -4.2286 21 14 9.9931 -2.3286 -4.9706 22 1 10.1389 -2.5055 -6.4378 23 1 10.9711 -3.1972 -4.2677 24 1 8.6154 -2.7024 -4.5614 25 6 5.7089 0.4135 -5.6602 26 6 4.5000 1.1133 -4.9850 27 1 4.4132 2.1414 -5.3369 28 6 3.2094 0.3429 -5.2708 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 7.1392 1.9405 1.7514 35 1 6.4882 0.4426 2.4591 36 1 7.5609 0.3639 1.0409 37 1 6.5273 0.9589 -1.3139 38 1 6.5005 0.0767 -2.8104 39 1 6.6378 1.8556 -2.8397 40 1 7.8274 -0.9752 -5.0374 41 1 12.2654 -0.7814 -4.2431 42 1 5.8282 0.7433 -6.6923 43 1 5.6110 -0.6707 -5.6071 44 1 2.3796 0.8171 -4.7468 45 1 3.0127 0.3486 -6.3429 46 1 3.3164 -0.6857 -4.9265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989059275.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:28 Heat of formation + Delta-G solvation = 32.191655 kcal Electronic energy + Delta-G solvation = -28222.657204 eV Core-core repulsion = 24343.544207 eV Total energy + Delta-G solvation = -3879.112997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.50360 -39.63011 -37.80335 -37.19816 -34.35432 -33.62801 -32.33183 -31.61472 -29.82894 -28.97254 -28.92827 -26.62568 -25.72577 -25.09535 -23.82612 -22.53788 -21.43366 -20.54218 -19.87159 -19.00326 -17.74493 -16.69855 -16.55131 -16.39041 -16.09117 -15.68837 -15.48863 -15.19012 -14.90803 -14.57469 -14.06998 -13.96100 -13.45099 -13.41531 -13.18660 -12.89761 -12.72557 -12.67096 -12.38223 -12.25723 -12.09836 -12.01074 -11.81899 -11.55198 -11.43551 -11.16981 -10.95809 -10.80232 -10.71144 -10.43385 -10.15107 -9.77512 -9.73462 -9.52946 -9.30415 -9.07310 -8.70091 -8.30242 -7.48540 -5.93159 -3.31366 1.56017 1.99001 2.28268 3.24568 3.27389 3.31063 3.36944 3.55145 3.99397 4.35580 4.45084 4.69070 4.75783 4.88689 4.98987 5.01797 5.06182 5.10033 5.22517 5.28941 5.30236 5.33180 5.37625 5.44108 5.47485 5.49750 5.55433 5.60147 5.72733 5.75334 5.84007 5.90862 5.97033 6.04535 6.31119 6.33542 6.34826 6.44831 6.61324 6.73798 6.81463 7.09984 7.51851 7.79769 7.85369 8.25616 8.51637 9.02382 9.74909 9.93335 11.24209 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012952 B = 0.004016 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.294324 B = 6971.068641 C = 8336.888130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.381 6.381 3 C 0.145 3.855 4 C 0.126 3.874 5 N -0.288 5.288 6 N -0.358 5.358 7 C 0.095 3.905 8 C 0.094 3.906 9 C -0.274 4.274 10 C 0.611 3.389 11 O -0.548 6.548 12 N -0.609 5.609 13 C 0.067 3.933 14 C 0.177 3.823 15 H 0.077 0.923 16 N -0.738 5.738 17 C -0.256 4.256 18 H 0.093 0.907 19 C 0.011 3.989 20 N -0.928 5.928 21 Si 0.882 3.118 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.276 1.276 25 C -0.141 4.141 26 C 0.141 3.859 27 H 0.074 0.926 28 C -0.163 4.163 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.202 0.798 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.365 0.635 41 H 0.261 0.739 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.056 0.944 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.112 3.227 6.930 17.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.298 6.298 3 C 0.067 3.933 4 C -0.042 4.042 5 N -0.111 5.111 6 N -0.137 5.137 7 C -0.046 4.046 8 C -0.057 4.057 9 C -0.288 4.288 10 C 0.401 3.599 11 O -0.427 6.427 12 N -0.342 5.342 13 C -0.059 4.059 14 C 0.065 3.935 15 H 0.095 0.905 16 N -0.379 5.379 17 C -0.385 4.385 18 H 0.111 0.889 19 C -0.185 4.185 20 N -0.575 5.575 21 Si 0.712 3.288 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.202 1.202 25 C -0.179 4.179 26 C 0.037 3.963 27 H 0.092 0.908 28 C -0.220 4.220 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.218 0.782 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.198 0.802 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.075 0.925 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.254 3.212 8.292 18.527 hybrid contribution 0.160 -1.181 -0.975 1.540 sum -16.094 2.030 7.317 17.796 Atomic orbital electron populations 1.22708 0.80749 1.02659 0.99978 1.87919 1.19691 1.26786 1.95452 1.20653 0.85007 0.85750 1.01931 1.21857 0.95444 0.97675 0.89205 1.77078 0.86673 1.24552 1.22757 1.48359 1.06069 1.54091 1.05170 1.22064 0.83930 1.03979 0.94621 1.24187 1.00137 0.96343 0.84996 1.20167 0.92091 1.22215 0.94364 1.16804 0.84546 0.75752 0.82793 1.90633 1.16162 1.52246 1.83677 1.48362 1.07304 1.72642 1.05933 1.23456 0.78828 1.00963 1.02665 1.21160 0.87023 0.94886 0.90389 0.90522 1.42755 1.04249 1.07355 1.83572 1.19072 0.82404 0.96718 1.40312 0.88934 1.24676 0.95206 0.97623 1.01043 1.69692 0.99080 1.34392 1.54315 0.86605 0.77305 0.86371 0.78551 1.20856 1.21642 1.20230 1.23241 0.94133 1.00903 0.99670 1.21848 0.95364 0.99299 0.79747 0.90798 1.22161 0.98188 1.00541 1.01146 0.94295 0.93622 0.89731 0.92314 0.89311 0.90037 0.88929 0.88441 0.78176 0.90877 0.91712 0.80181 0.92850 0.89815 0.90752 0.89560 0.92475 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.66 10.69 -35.23 -0.38 -6.04 16 3 C 0.14 2.03 5.97 36.00 0.21 2.24 16 4 C 0.13 2.00 6.89 -82.03 -0.57 1.43 16 5 N -0.29 -4.45 12.50 33.89 0.42 -4.02 16 6 N -0.36 -4.80 3.98 -67.60 -0.27 -5.07 16 7 C 0.09 0.84 11.44 59.85 0.68 1.52 16 8 C 0.09 1.33 9.97 -16.56 -0.17 1.16 16 9 C -0.27 -4.38 6.10 -105.06 -0.64 -5.02 16 10 C 0.61 10.23 7.63 -12.52 -0.10 10.13 16 11 O -0.55 -9.86 12.58 5.27 0.07 -9.80 16 12 N -0.61 -9.39 3.24 -164.16 -0.53 -9.92 16 13 C 0.07 1.04 4.74 -3.06 -0.01 1.02 16 14 C 0.18 2.98 3.59 -66.09 -0.24 2.74 16 15 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 16 N -0.74 -15.49 4.97 -51.65 -0.26 -15.75 16 17 C -0.26 -6.47 10.45 -15.06 -0.16 -6.63 16 18 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 19 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 20 N -0.93 -27.22 13.97 55.49 0.78 -26.44 16 21 Si 0.88 20.67 27.74 -169.99 -4.72 15.95 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.10 6.51 56.52 0.37 -5.74 16 25 C -0.14 -2.00 6.15 -24.46 -0.15 -2.15 16 26 C 0.14 1.96 3.76 -66.29 -0.25 1.71 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 C -0.16 -2.21 8.71 37.16 0.32 -1.89 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.26 6.56 -51.93 -0.34 0.92 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.20 2.62 4.42 -52.49 -0.23 2.38 16 38 H 0.07 1.20 6.73 -51.93 -0.35 0.85 16 39 H 0.06 0.95 7.00 -51.93 -0.36 0.58 16 40 H 0.36 7.69 5.59 -40.82 -0.23 7.46 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.07 1.10 7.92 -51.93 -0.41 0.69 16 44 H 0.09 1.31 5.88 -51.93 -0.31 1.00 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 370.46 15.07 5.58 5.58 Total: -1.00 -32.90 370.46 -6.23 -39.13 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.89 Total: 8.40 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -0.04 Total: 7.97 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.14 Total: -61.21 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.31 Total: -15.83 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.72 Total: 15.95 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.90 -6.23 -39.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989059275.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.325 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds