Wall clock time and date at job start Tue Mar 31 2020 14:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99811 * 2 1 4 4 C 1.50696 * 109.47010 * 179.97438 * 3 2 1 5 5 N 1.30439 * 125.99183 * 270.14178 * 4 3 2 6 6 N 1.39935 * 108.89912 * 180.25914 * 5 4 3 7 7 C 1.46499 * 125.75305 * 179.77025 * 6 5 4 8 8 C 1.34259 * 108.49396 * 359.75404 * 6 5 4 9 9 C 1.38045 * 107.41143 * 359.97438 * 8 6 5 10 10 C 1.47434 * 126.41216 * 179.97438 * 9 8 6 11 11 O 1.21606 * 120.00149 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99778 * 0.02562 * 10 9 8 13 13 C 1.47025 * 125.65167 * 359.97438 * 12 10 9 14 14 C 1.54324 * 107.27206 * 178.97359 * 13 12 10 15 15 H 1.09000 * 110.72054 * 96.34854 * 14 13 12 16 16 N 1.46505 * 110.71897 * 219.44371 * 14 13 12 17 17 C 1.36931 * 119.99788 * 271.15747 * 16 14 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31617 * 119.99873 * 180.27450 * 19 17 16 21 21 Si 1.86800 * 120.00209 * 0.27770 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99559 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00079 * 21 19 17 24 24 H 1.48507 * 109.46904 * 329.99901 * 21 19 17 25 25 C 1.55154 * 103.10250 * 337.89245 * 14 13 12 26 26 C 1.47427 * 125.64517 * 180.02562 * 12 10 9 27 27 H 1.09003 * 110.36511 * 85.15548 * 26 12 10 28 28 C 1.52995 * 110.37009 * 322.93515 * 26 12 10 29 29 H 1.08998 * 109.47042 * 300.00337 * 1 2 3 30 30 H 1.08997 * 109.46903 * 60.00243 * 1 2 3 31 31 H 1.09000 * 109.46750 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47443 * 59.99696 * 3 2 1 33 33 H 1.09000 * 109.46977 * 299.99693 * 3 2 1 34 34 H 1.09004 * 109.47504 * 269.97573 * 7 6 5 35 35 H 1.08999 * 109.47169 * 29.98358 * 7 6 5 36 36 H 1.09006 * 109.46878 * 149.98056 * 7 6 5 37 37 H 1.07995 * 126.29387 * 179.97438 * 8 6 5 38 38 H 1.09002 * 109.87719 * 59.55418 * 13 12 10 39 39 H 1.08995 * 110.00957 * 298.46357 * 13 12 10 40 40 H 0.97000 * 119.99792 * 91.15541 * 16 14 13 41 41 H 0.97000 * 120.00553 * 180.02562 * 20 19 17 42 42 H 1.09004 * 111.00655 * 153.48811 * 25 14 13 43 43 H 1.08998 * 111.00825 * 277.33950 * 25 14 13 44 44 H 1.09001 * 109.46840 * 61.45759 * 28 26 12 45 45 H 1.09000 * 109.46990 * 181.45095 * 28 26 12 46 46 H 1.09002 * 109.47223 * 301.45248 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2760 1.1236 1.0563 6 7 5.6101 1.0249 0.6456 7 6 6.7741 0.9374 1.5309 8 6 5.6435 1.0236 -0.6965 9 6 4.3406 1.1201 -1.1423 10 6 3.8968 1.1546 -2.5478 11 8 2.7125 1.2427 -2.8095 12 7 4.8037 1.0886 -3.5426 13 6 6.2597 0.9811 -3.3691 14 6 6.8850 0.9097 -4.7782 15 1 7.2206 1.8951 -5.1016 16 7 7.9933 -0.0480 -4.8055 17 6 9.2632 0.3657 -4.5037 18 1 9.4478 1.3979 -4.2450 19 6 10.3124 -0.5431 -4.5240 20 7 11.5322 -0.1466 -4.2286 21 14 9.9931 -2.3286 -4.9706 22 1 10.1389 -2.5055 -6.4378 23 1 10.9711 -3.1972 -4.2677 24 1 8.6154 -2.7024 -4.5614 25 6 5.7089 0.4135 -5.6602 26 6 4.5000 1.1133 -4.9850 27 1 4.4132 2.1414 -5.3369 28 6 3.2094 0.3429 -5.2708 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 7.1392 1.9405 1.7514 35 1 6.4882 0.4426 2.4591 36 1 7.5609 0.3639 1.0409 37 1 6.5273 0.9589 -1.3139 38 1 6.5005 0.0767 -2.8104 39 1 6.6378 1.8556 -2.8397 40 1 7.8274 -0.9752 -5.0374 41 1 12.2654 -0.7814 -4.2431 42 1 5.8282 0.7433 -6.6923 43 1 5.6110 -0.6707 -5.6071 44 1 2.3796 0.8171 -4.7468 45 1 3.0127 0.3486 -6.3429 46 1 3.3164 -0.6857 -4.9265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989059275.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:27 Heat of formation + Delta-G solvation = 9.040796 kcal Electronic energy + Delta-G solvation = -28223.661100 eV Core-core repulsion = 24343.544207 eV Total energy + Delta-G solvation = -3880.116893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.61996 -40.86405 -38.86832 -38.48120 -36.02311 -34.63364 -33.59966 -33.35318 -30.94595 -30.47628 -29.91230 -27.54192 -26.86780 -26.15901 -25.47884 -23.82245 -22.57800 -21.95623 -21.04233 -20.17286 -19.59833 -17.83518 -17.71083 -17.48278 -17.29581 -16.68623 -16.52802 -16.49414 -16.15949 -15.98926 -15.56156 -15.17808 -14.91132 -14.60656 -14.43026 -14.27014 -13.75765 -13.65529 -13.58517 -13.36654 -13.27478 -13.09662 -13.04791 -12.93643 -12.84916 -12.37448 -12.29187 -12.16598 -11.96463 -11.91987 -11.78475 -11.52404 -11.00897 -10.81074 -10.60643 -10.43152 -9.86420 -9.51920 -9.33709 -7.98949 -5.33636 0.43905 0.83248 1.31445 1.43228 1.44266 1.51050 2.04121 2.33770 2.51206 2.98235 3.30589 3.31851 3.46547 3.65145 3.73192 3.83031 3.96766 4.08846 4.17422 4.19624 4.32048 4.33712 4.37135 4.40020 4.46909 4.52540 4.54234 4.58193 4.65350 4.73389 4.78180 4.79500 4.83968 4.88045 5.13145 5.14334 5.22791 5.32034 5.34270 5.62311 5.77011 5.82048 6.15842 6.24589 6.39328 6.59028 7.09664 7.26292 7.84532 8.02767 9.21518 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012952 B = 0.004016 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.294324 B = 6971.068641 C = 8336.888130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.410 6.410 3 C 0.148 3.852 4 C 0.112 3.888 5 N -0.303 5.303 6 N -0.354 5.354 7 C 0.084 3.916 8 C 0.100 3.900 9 C -0.299 4.299 10 C 0.607 3.393 11 O -0.565 6.565 12 N -0.608 5.608 13 C 0.077 3.923 14 C 0.170 3.830 15 H 0.077 0.923 16 N -0.739 5.739 17 C -0.228 4.228 18 H 0.069 0.931 19 C -0.054 4.054 20 N -0.979 5.979 21 Si 0.943 3.057 22 H -0.282 1.282 23 H -0.301 1.301 24 H -0.253 1.253 25 C -0.128 4.128 26 C 0.138 3.862 27 H 0.087 0.913 28 C -0.154 4.154 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.211 0.789 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.367 0.633 41 H 0.257 0.743 42 H 0.104 0.896 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.367 2.813 6.734 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.329 6.329 3 C 0.070 3.930 4 C -0.056 4.056 5 N -0.127 5.127 6 N -0.132 5.132 7 C -0.055 4.055 8 C -0.052 4.052 9 C -0.314 4.314 10 C 0.397 3.603 11 O -0.447 6.447 12 N -0.341 5.341 13 C -0.049 4.049 14 C 0.060 3.940 15 H 0.095 0.905 16 N -0.382 5.382 17 C -0.358 4.358 18 H 0.087 0.913 19 C -0.246 4.246 20 N -0.629 5.629 21 Si 0.772 3.228 22 H -0.208 1.208 23 H -0.229 1.229 24 H -0.178 1.178 25 C -0.167 4.167 26 C 0.036 3.964 27 H 0.105 0.895 28 C -0.212 4.212 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.227 0.773 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.201 0.799 41 H 0.066 0.934 42 H 0.123 0.877 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.575 2.809 8.102 19.555 hybrid contribution 0.502 -0.956 -0.872 1.388 sum -17.073 1.853 7.230 18.633 Atomic orbital electron populations 1.22922 0.78707 1.03886 1.01068 1.87866 1.22037 1.27313 1.95653 1.20655 0.84297 0.85687 1.02401 1.22185 0.96393 0.97742 0.89260 1.77024 0.87618 1.25058 1.22952 1.48743 1.06386 1.52639 1.05439 1.22457 0.82818 1.05630 0.94606 1.24264 0.99776 0.95651 0.85541 1.20289 0.93014 1.23846 0.94240 1.16955 0.84451 0.75568 0.83280 1.90622 1.16815 1.53186 1.84029 1.48369 1.06944 1.72321 1.06490 1.23210 0.78992 1.01089 1.01609 1.21334 0.86752 0.94144 0.91752 0.90499 1.42721 1.03729 1.08174 1.83533 1.19047 0.84011 0.95460 1.37332 0.91308 1.25353 0.95057 1.01710 1.02501 1.69851 1.00153 1.35629 1.57266 0.85594 0.77883 0.81433 0.77925 1.20798 1.22857 1.17813 1.23178 0.92478 1.00789 1.00233 1.22004 0.95442 1.00144 0.78842 0.89470 1.22062 0.97197 0.99357 1.02544 0.92285 0.93404 0.88498 0.90481 0.90056 0.88172 0.87775 0.87020 0.77278 0.91580 0.90848 0.79932 0.93435 0.87745 0.90890 0.91257 0.89925 0.94070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -12.02 10.69 -148.98 -1.59 -13.62 16 3 C 0.15 4.10 5.97 71.23 0.42 4.52 16 4 C 0.11 3.50 6.89 43.52 0.30 3.80 16 5 N -0.30 -9.12 12.50 -46.68 -0.58 -9.71 16 6 N -0.35 -9.04 3.98 -367.77 -1.46 -10.50 16 7 C 0.08 1.32 11.44 127.77 1.46 2.78 16 8 C 0.10 2.72 9.97 84.28 0.84 3.56 16 9 C -0.30 -9.43 6.10 -20.15 -0.12 -9.56 16 10 C 0.61 19.94 7.63 86.67 0.66 20.60 16 11 O -0.57 -20.24 12.58 -4.05 -0.05 -20.29 16 12 N -0.61 -17.89 3.24 -791.53 -2.57 -20.46 16 13 C 0.08 2.26 4.74 86.73 0.41 2.67 16 14 C 0.17 5.36 3.59 46.18 0.17 5.53 16 15 H 0.08 2.46 8.11 -2.39 -0.02 2.44 16 16 N -0.74 -29.66 4.97 -317.32 -1.58 -31.24 16 17 C -0.23 -11.39 10.45 84.04 0.88 -10.52 16 18 H 0.07 3.73 8.06 -2.91 -0.02 3.71 16 19 C -0.05 -2.91 5.50 84.86 0.47 -2.45 16 20 N -0.98 -58.30 13.97 21.65 0.30 -57.99 16 21 Si 0.94 42.18 27.74 68.60 1.90 44.08 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 24 H -0.25 -10.22 6.51 99.48 0.65 -9.57 16 25 C -0.13 -3.28 6.15 32.07 0.20 -3.08 16 26 C 0.14 3.55 3.76 45.55 0.17 3.72 16 27 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 28 C -0.15 -3.88 8.71 71.98 0.63 -3.25 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 2.33 6.56 -2.39 -0.02 2.31 16 34 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.21 5.20 4.42 -2.91 -0.01 5.19 16 38 H 0.07 2.07 6.73 -2.39 -0.02 2.05 16 39 H 0.07 2.04 7.00 -2.39 -0.02 2.02 16 40 H 0.37 14.50 5.59 -92.71 -0.52 13.99 16 41 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 42 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 43 H 0.07 1.93 7.92 -2.39 -0.02 1.91 16 44 H 0.07 2.02 5.88 -2.39 -0.01 2.01 16 45 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -70.88 370.46 2.53 -68.35 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.42 Total: 31.20 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: 7.73 Total: 20.18 kcal Atomic # 7 Polarization: -124.01 SS G_CDS: -5.89 Total: -129.89 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -1.64 Total: -33.91 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.90 Total: 44.08 kcal Total: -70.88 2.53 -68.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989059275.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.392 kcal (2) G-P(sol) polarization free energy of solvation -70.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds