Wall clock time and date at job start Tue Mar 31 2020 14:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42892 * 114.00504 * 2 1 4 4 C 1.50701 * 109.47474 * 179.97438 * 3 2 1 5 5 N 1.30440 * 125.98895 * 269.99351 * 4 3 2 6 6 N 1.39935 * 108.89913 * 179.97438 * 5 4 3 7 7 C 1.46500 * 125.75663 * 180.02562 * 6 5 4 8 8 C 1.34265 * 108.48857 * 359.75612 * 6 5 4 9 9 C 1.38044 * 107.41554 * 0.39383 * 8 6 5 10 10 C 1.47432 * 126.41286 * 179.87727 * 9 8 6 11 11 O 1.21601 * 119.99623 * 214.35282 * 10 9 8 12 12 N 1.34775 * 120.00031 * 34.34171 * 10 9 8 13 13 C 1.47428 * 125.65040 * 355.59339 * 12 10 9 14 14 C 1.54912 * 104.82895 * 155.88796 * 13 12 10 15 15 H 1.09003 * 110.99671 * 155.08393 * 14 13 12 16 16 N 1.46495 * 111.00630 * 278.93059 * 14 13 12 17 17 C 1.36935 * 120.00298 * 273.55359 * 16 14 13 18 18 H 1.07996 * 119.99927 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00150 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00131 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00196 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46861 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46849 * 120.00358 * 21 19 17 24 24 H 1.48495 * 109.47536 * 240.00285 * 21 19 17 25 25 C 1.55150 * 101.58200 * 37.01023 * 14 13 12 26 26 C 1.47023 * 125.64796 * 175.61172 * 12 10 9 27 27 H 1.09002 * 109.88079 * 300.46147 * 26 12 10 28 28 C 1.53004 * 109.87995 * 61.46873 * 26 12 10 29 29 H 1.08994 * 109.47594 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47024 * 300.00574 * 1 2 3 31 31 H 1.09004 * 109.46664 * 60.00376 * 1 2 3 32 32 H 1.09003 * 109.47586 * 59.99384 * 3 2 1 33 33 H 1.09000 * 109.47030 * 300.00008 * 3 2 1 34 34 H 1.08996 * 109.47189 * 89.97812 * 7 6 5 35 35 H 1.09003 * 109.47113 * 209.97489 * 7 6 5 36 36 H 1.09003 * 109.47257 * 329.97722 * 7 6 5 37 37 H 1.07999 * 126.28804 * 180.25049 * 8 6 5 38 38 H 1.09001 * 110.36176 * 274.72810 * 13 12 10 39 39 H 1.08999 * 110.36342 * 37.04823 * 13 12 10 40 40 H 0.97006 * 119.99768 * 93.54738 * 16 14 13 41 41 H 0.97003 * 120.00713 * 179.97438 * 20 19 17 42 42 H 1.09003 * 110.71931 * 206.13320 * 25 14 13 43 43 H 1.08996 * 110.87561 * 82.93383 * 25 14 13 44 44 H 1.08993 * 109.47090 * 58.55013 * 28 26 12 45 45 H 1.09000 * 109.46915 * 178.54976 * 28 26 12 46 46 H 1.08999 * 109.47404 * 298.54503 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2763 1.1261 1.0564 6 7 5.6098 1.0197 0.6457 7 6 6.7734 0.9270 1.5310 8 6 5.6425 1.0110 -0.6965 9 6 4.3406 1.1200 -1.1423 10 6 3.8968 1.1541 -2.5478 11 8 2.9380 1.8308 -2.8663 12 7 4.5539 0.4355 -3.4796 13 6 5.7799 -0.3507 -3.2515 14 6 5.7747 -1.4259 -4.3668 15 1 6.7861 -1.7712 -4.5811 16 7 4.9034 -2.5482 -4.0101 17 6 5.3932 -3.5838 -3.2598 18 1 6.4219 -3.5732 -2.9313 19 6 4.5674 -4.6470 -2.9214 20 7 3.3135 -4.6596 -3.3213 21 14 5.2357 -6.0600 -1.8985 22 1 6.6636 -5.8071 -1.5783 23 1 4.4581 -6.1696 -0.6380 24 1 5.1165 -7.3260 -2.6653 25 6 5.1935 -0.6293 -5.5646 26 6 4.1669 0.3062 -4.8921 27 1 3.1686 -0.1254 -4.9649 28 6 4.1901 1.6797 -5.5658 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 6.9800 -0.1203 1.7510 35 1 7.6390 1.3730 1.0412 36 1 6.5668 1.4594 2.4595 37 1 6.5254 0.9351 -1.3138 38 1 6.6606 0.2852 -3.3417 39 1 5.7506 -0.8227 -2.2694 40 1 3.9794 -2.5578 -4.3054 41 1 2.7365 -5.4028 -3.0852 42 1 4.7010 -1.2985 -6.2702 43 1 5.9729 -0.0524 -6.0622 44 1 5.1887 2.1085 -5.4824 45 1 3.9273 1.5727 -6.6182 46 1 3.4707 2.3365 -5.0768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989059276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:31 Heat of formation + Delta-G solvation = 22.280796 kcal Electronic energy + Delta-G solvation = -28737.745634 eV Core-core repulsion = 24858.202870 eV Total energy + Delta-G solvation = -3879.542764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.33754 -39.42217 -37.58225 -37.03601 -33.92440 -33.54041 -31.98346 -31.26586 -29.78452 -28.82113 -28.38027 -26.44311 -25.52184 -24.97693 -23.75121 -22.81512 -21.20007 -20.40167 -19.53339 -18.73691 -17.26517 -16.82259 -16.37353 -16.21911 -15.79055 -15.52499 -15.33209 -14.99119 -14.54773 -14.50002 -13.85742 -13.70384 -13.56817 -13.14843 -13.11252 -12.82248 -12.66878 -12.55577 -12.15456 -12.13915 -11.95972 -11.79032 -11.61820 -11.20280 -11.12091 -10.93027 -10.81886 -10.68899 -10.60656 -10.27535 -9.96148 -9.70399 -9.60570 -9.37921 -9.28194 -8.99354 -8.50957 -8.09374 -6.98776 -5.78477 -3.08438 1.70843 2.21682 2.38558 3.35134 3.41704 3.45635 3.49672 3.73986 4.14460 4.48191 4.55820 4.71530 4.91663 4.98698 5.03367 5.18630 5.21218 5.26714 5.34799 5.41697 5.51020 5.54537 5.55215 5.62562 5.64618 5.67757 5.73884 5.84675 5.89192 5.91894 5.95767 6.03562 6.22469 6.27839 6.45526 6.47922 6.49618 6.65223 6.74120 6.83970 6.95673 7.33470 7.65158 7.66365 8.07460 8.38561 8.69872 9.50500 10.06388 10.40552 11.43580 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008403 B = 0.005419 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3331.221078 B = 5165.339864 C = 6001.439788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.378 6.378 3 C 0.138 3.862 4 C 0.127 3.873 5 N -0.283 5.283 6 N -0.362 5.362 7 C 0.099 3.901 8 C 0.096 3.904 9 C -0.256 4.256 10 C 0.613 3.387 11 O -0.554 6.554 12 N -0.593 5.593 13 C 0.065 3.935 14 C 0.169 3.831 15 H 0.069 0.931 16 N -0.710 5.710 17 C -0.246 4.246 18 H 0.071 0.929 19 C -0.007 4.007 20 N -0.924 5.924 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.291 1.291 25 C -0.137 4.137 26 C 0.141 3.859 27 H 0.073 0.927 28 C -0.159 4.159 29 H 0.088 0.912 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.184 0.816 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.051 0.949 45 H 0.059 0.941 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.272 14.416 3.780 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.296 6.296 3 C 0.060 3.940 4 C -0.041 4.041 5 N -0.107 5.107 6 N -0.141 5.141 7 C -0.042 4.042 8 C -0.054 4.054 9 C -0.271 4.271 10 C 0.402 3.598 11 O -0.434 6.434 12 N -0.325 5.325 13 C -0.061 4.061 14 C 0.057 3.943 15 H 0.087 0.913 16 N -0.350 5.350 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.204 4.204 20 N -0.572 5.572 21 Si 0.735 3.265 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.218 1.218 25 C -0.176 4.176 26 C 0.038 3.962 27 H 0.091 0.909 28 C -0.217 4.217 29 H 0.106 0.894 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.201 0.799 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.084 14.472 5.134 16.175 hybrid contribution 0.027 -0.783 -0.190 0.807 sum 5.111 13.689 4.943 15.425 Atomic orbital electron populations 1.22733 0.80631 1.03025 0.99722 1.88008 1.19807 1.26325 1.95410 1.20698 0.85204 0.85998 1.02092 1.21811 0.95448 0.97665 0.89164 1.77074 0.86455 1.24601 1.22547 1.48212 1.06148 1.54894 1.04854 1.21967 0.83782 1.04003 0.94479 1.23156 0.99155 0.98238 0.84863 1.20114 0.92317 1.20202 0.94444 1.16770 0.81706 0.78417 0.82872 1.90667 1.28605 1.42722 1.81369 1.48182 1.27552 1.47718 1.09001 1.23494 0.85099 0.93738 1.03786 1.21309 0.95373 0.87339 0.90298 0.91313 1.42314 1.11197 1.18785 1.62696 1.19196 0.95605 0.97413 1.25513 0.91115 1.24743 0.95779 0.98827 1.01012 1.69667 1.05186 1.32422 1.49886 0.86177 0.77835 0.82604 0.79865 1.20588 1.21873 1.21813 1.23029 0.98289 0.97810 0.98456 1.21450 0.99103 0.95370 0.80302 0.90863 1.22143 1.02052 0.97415 1.00119 0.89373 0.94336 0.93755 0.92098 0.89436 0.90058 0.89173 0.89053 0.79887 0.93092 0.90077 0.77965 0.93460 0.89847 0.90766 0.93023 0.92197 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 11.01 101.05 1.11 1.62 16 2 O -0.38 -7.16 10.69 -35.23 -0.38 -7.53 16 3 C 0.14 2.34 6.30 36.01 0.23 2.57 16 4 C 0.13 2.31 6.89 -82.02 -0.56 1.74 16 5 N -0.28 -4.86 12.50 33.89 0.42 -4.43 16 6 N -0.36 -5.05 3.98 -67.60 -0.27 -5.32 16 7 C 0.10 0.83 11.44 59.85 0.68 1.51 16 8 C 0.10 1.38 9.55 -16.56 -0.16 1.23 16 9 C -0.26 -4.60 5.66 -105.07 -0.60 -5.19 16 10 C 0.61 11.83 7.49 -12.52 -0.09 11.73 16 11 O -0.55 -11.61 14.39 5.28 0.08 -11.54 16 12 N -0.59 -10.56 3.07 -164.27 -0.50 -11.06 16 13 C 0.07 1.08 5.06 -2.53 -0.01 1.07 16 14 C 0.17 3.08 3.69 -65.79 -0.24 2.84 16 15 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 16 N -0.71 -17.07 5.27 -51.36 -0.27 -17.34 16 17 C -0.25 -6.59 9.98 -15.06 -0.15 -6.74 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -27.97 13.06 55.49 0.72 -27.25 16 21 Si 0.90 22.29 29.55 -169.99 -5.02 17.27 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 C -0.14 -2.09 6.05 -24.90 -0.15 -2.24 16 26 C 0.14 2.34 3.47 -66.95 -0.23 2.11 16 27 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 28 C -0.16 -2.25 9.11 37.16 0.34 -1.91 16 29 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.50 6.64 -51.93 -0.34 1.16 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.18 2.03 6.49 -52.49 -0.34 1.69 16 38 H 0.05 0.66 7.71 -51.93 -0.40 0.26 16 39 H 0.08 1.52 6.60 -51.93 -0.34 1.18 16 40 H 0.39 10.24 7.82 -40.82 -0.32 9.92 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.07 1.10 6.74 -51.93 -0.35 0.75 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -35.71 378.69 -6.57 -42.28 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -7.12 Total: 9.17 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 0.07 Total: 10.05 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: 0.11 Total: -65.40 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.30 Total: -19.07 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.71 -6.57 -42.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989059276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.561 kcal (2) G-P(sol) polarization free energy of solvation -35.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds