Wall clock time and date at job start Tue Mar 31 2020 14:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42892 * 114.00504 * 2 1 4 4 C 1.50701 * 109.47474 * 179.97438 * 3 2 1 5 5 N 1.30440 * 125.98895 * 269.99351 * 4 3 2 6 6 N 1.39935 * 108.89913 * 179.97438 * 5 4 3 7 7 C 1.46500 * 125.75663 * 180.02562 * 6 5 4 8 8 C 1.34265 * 108.48857 * 359.75612 * 6 5 4 9 9 C 1.38044 * 107.41554 * 0.39383 * 8 6 5 10 10 C 1.47432 * 126.41286 * 179.87727 * 9 8 6 11 11 O 1.21601 * 119.99623 * 214.35282 * 10 9 8 12 12 N 1.34775 * 120.00031 * 34.34171 * 10 9 8 13 13 C 1.47428 * 125.65040 * 355.59339 * 12 10 9 14 14 C 1.54912 * 104.82895 * 155.88796 * 13 12 10 15 15 H 1.09003 * 110.99671 * 155.08393 * 14 13 12 16 16 N 1.46495 * 111.00630 * 278.93059 * 14 13 12 17 17 C 1.36935 * 120.00298 * 273.55359 * 16 14 13 18 18 H 1.07996 * 119.99927 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00150 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00131 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00196 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46861 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46849 * 120.00358 * 21 19 17 24 24 H 1.48495 * 109.47536 * 240.00285 * 21 19 17 25 25 C 1.55150 * 101.58200 * 37.01023 * 14 13 12 26 26 C 1.47023 * 125.64796 * 175.61172 * 12 10 9 27 27 H 1.09002 * 109.88079 * 300.46147 * 26 12 10 28 28 C 1.53004 * 109.87995 * 61.46873 * 26 12 10 29 29 H 1.08994 * 109.47594 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47024 * 300.00574 * 1 2 3 31 31 H 1.09004 * 109.46664 * 60.00376 * 1 2 3 32 32 H 1.09003 * 109.47586 * 59.99384 * 3 2 1 33 33 H 1.09000 * 109.47030 * 300.00008 * 3 2 1 34 34 H 1.08996 * 109.47189 * 89.97812 * 7 6 5 35 35 H 1.09003 * 109.47113 * 209.97489 * 7 6 5 36 36 H 1.09003 * 109.47257 * 329.97722 * 7 6 5 37 37 H 1.07999 * 126.28804 * 180.25049 * 8 6 5 38 38 H 1.09001 * 110.36176 * 274.72810 * 13 12 10 39 39 H 1.08999 * 110.36342 * 37.04823 * 13 12 10 40 40 H 0.97006 * 119.99768 * 93.54738 * 16 14 13 41 41 H 0.97003 * 120.00713 * 179.97438 * 20 19 17 42 42 H 1.09003 * 110.71931 * 206.13320 * 25 14 13 43 43 H 1.08996 * 110.87561 * 82.93383 * 25 14 13 44 44 H 1.08993 * 109.47090 * 58.55013 * 28 26 12 45 45 H 1.09000 * 109.46915 * 178.54976 * 28 26 12 46 46 H 1.08999 * 109.47404 * 298.54503 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2763 1.1261 1.0564 6 7 5.6098 1.0197 0.6457 7 6 6.7734 0.9270 1.5310 8 6 5.6425 1.0110 -0.6965 9 6 4.3406 1.1200 -1.1423 10 6 3.8968 1.1541 -2.5478 11 8 2.9380 1.8308 -2.8663 12 7 4.5539 0.4355 -3.4796 13 6 5.7799 -0.3507 -3.2515 14 6 5.7747 -1.4259 -4.3668 15 1 6.7861 -1.7712 -4.5811 16 7 4.9034 -2.5482 -4.0101 17 6 5.3932 -3.5838 -3.2598 18 1 6.4219 -3.5732 -2.9313 19 6 4.5674 -4.6470 -2.9214 20 7 3.3135 -4.6596 -3.3213 21 14 5.2357 -6.0600 -1.8985 22 1 6.6636 -5.8071 -1.5783 23 1 4.4581 -6.1696 -0.6380 24 1 5.1165 -7.3260 -2.6653 25 6 5.1935 -0.6293 -5.5646 26 6 4.1669 0.3062 -4.8921 27 1 3.1686 -0.1254 -4.9649 28 6 4.1901 1.6797 -5.5658 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 6.9800 -0.1203 1.7510 35 1 7.6390 1.3730 1.0412 36 1 6.5668 1.4594 2.4595 37 1 6.5254 0.9351 -1.3138 38 1 6.6606 0.2852 -3.3417 39 1 5.7506 -0.8227 -2.2694 40 1 3.9794 -2.5578 -4.3054 41 1 2.7365 -5.4028 -3.0852 42 1 4.7010 -1.2985 -6.2702 43 1 5.9729 -0.0524 -6.0622 44 1 5.1887 2.1085 -5.4824 45 1 3.9273 1.5727 -6.6182 46 1 3.4707 2.3365 -5.0768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989059276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:30 Heat of formation + Delta-G solvation = -4.368226 kcal Electronic energy + Delta-G solvation = -28738.901222 eV Core-core repulsion = 24858.202870 eV Total energy + Delta-G solvation = -3880.698352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.52965 -40.78619 -38.90586 -38.49401 -35.74231 -34.61917 -33.34530 -33.00341 -30.97052 -30.06182 -29.93648 -27.53052 -26.78997 -26.18204 -25.67267 -24.10816 -22.40377 -21.80034 -20.82773 -20.03854 -19.21615 -18.12210 -17.69501 -17.53347 -17.11810 -16.78812 -16.48233 -16.29703 -16.17087 -15.83532 -15.39176 -15.28306 -14.93958 -14.70765 -14.27638 -14.01302 -13.72931 -13.57089 -13.38545 -13.27501 -13.20878 -13.12836 -13.05077 -12.90088 -12.68321 -12.40856 -12.24269 -12.15168 -11.99348 -11.97066 -11.60705 -11.44231 -11.03365 -10.91804 -10.63168 -10.52467 -9.76901 -9.49929 -8.91803 -7.90894 -5.18643 0.56780 0.89951 1.39667 1.45774 1.47436 1.56161 1.97391 2.41076 2.57221 2.96156 3.37048 3.41680 3.64850 3.68974 3.91291 3.97411 3.98528 4.10316 4.19308 4.23823 4.31851 4.41068 4.43012 4.43697 4.46396 4.49660 4.54721 4.69140 4.74479 4.75601 4.78241 4.81302 4.83177 5.00147 5.16260 5.22640 5.25861 5.29608 5.42565 5.57593 5.62043 5.88122 6.09767 6.30145 6.43675 6.69415 7.28656 7.36484 8.13388 8.34224 9.33083 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008403 B = 0.005419 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3331.221078 B = 5165.339864 C = 6001.439788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.417 6.417 3 C 0.140 3.860 4 C 0.101 3.899 5 N -0.305 5.305 6 N -0.354 5.354 7 C 0.085 3.915 8 C 0.116 3.884 9 C -0.297 4.297 10 C 0.605 3.395 11 O -0.585 6.585 12 N -0.596 5.596 13 C 0.073 3.927 14 C 0.155 3.845 15 H 0.091 0.909 16 N -0.726 5.726 17 C -0.228 4.228 18 H 0.087 0.913 19 C -0.079 4.079 20 N -0.971 5.971 21 Si 0.964 3.036 22 H -0.256 1.256 23 H -0.307 1.307 24 H -0.296 1.296 25 C -0.120 4.120 26 C 0.135 3.865 27 H 0.034 0.966 28 C -0.146 4.146 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.101 0.899 37 H 0.222 0.778 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.368 0.632 41 H 0.246 0.754 42 H 0.074 0.926 43 H 0.118 0.882 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.035 15.562 3.915 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.336 6.336 3 C 0.062 3.938 4 C -0.066 4.066 5 N -0.129 5.129 6 N -0.132 5.132 7 C -0.053 4.053 8 C -0.036 4.036 9 C -0.312 4.312 10 C 0.395 3.605 11 O -0.467 6.467 12 N -0.327 5.327 13 C -0.052 4.052 14 C 0.046 3.954 15 H 0.108 0.892 16 N -0.364 5.364 17 C -0.360 4.360 18 H 0.105 0.895 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.794 3.206 22 H -0.180 1.180 23 H -0.235 1.235 24 H -0.223 1.223 25 C -0.159 4.159 26 C 0.032 3.968 27 H 0.052 0.948 28 C -0.204 4.204 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.149 0.851 36 H 0.120 0.880 37 H 0.239 0.761 38 H 0.122 0.878 39 H 0.077 0.923 40 H 0.199 0.801 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.136 0.864 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.931 15.652 5.282 18.779 hybrid contribution -1.052 -1.066 -0.226 1.515 sum 7.879 14.586 5.055 17.331 Atomic orbital electron populations 1.22923 0.78726 1.03668 1.01293 1.87939 1.22185 1.27814 1.95663 1.20712 0.85275 0.85309 1.02471 1.22053 0.96094 0.98608 0.89838 1.76985 0.88095 1.25246 1.22592 1.48694 1.06205 1.52828 1.05522 1.22485 0.82979 1.05115 0.94749 1.23608 0.98929 0.95718 0.85310 1.20230 0.94099 1.23146 0.93689 1.17092 0.81436 0.78268 0.83699 1.90632 1.29904 1.44209 1.81975 1.48286 1.27923 1.47238 1.09229 1.23454 0.86351 0.93764 1.01623 1.21691 0.95360 0.86350 0.92036 0.89175 1.42556 1.11113 1.20222 1.62548 1.19674 0.95855 0.97149 1.23285 0.89507 1.25523 0.96215 1.01857 1.03501 1.69840 1.06691 1.33078 1.52563 0.85204 0.78187 0.79671 0.77534 1.18011 1.23530 1.22303 1.22969 0.98615 0.97140 0.97143 1.21530 0.97742 0.97076 0.80432 0.94802 1.22021 1.02598 0.95133 1.00650 0.89241 0.91402 0.93493 0.89895 0.90671 0.89387 0.85133 0.88010 0.76124 0.87803 0.92267 0.80099 0.94528 0.90776 0.86414 0.90853 0.90120 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.42 -16.57 10.69 -148.98 -1.59 -18.16 16 3 C 0.14 4.96 6.30 71.24 0.45 5.41 16 4 C 0.10 3.73 6.89 43.52 0.30 4.03 16 5 N -0.30 -10.29 12.50 -46.68 -0.58 -10.88 16 6 N -0.35 -9.05 3.98 -367.77 -1.46 -10.51 16 7 C 0.09 1.12 11.44 127.77 1.46 2.59 16 8 C 0.12 3.06 9.55 84.27 0.81 3.87 16 9 C -0.30 -10.58 5.66 -20.15 -0.11 -10.70 16 10 C 0.60 23.58 7.49 86.67 0.65 24.23 16 11 O -0.59 -25.58 14.39 -4.03 -0.06 -25.64 16 12 N -0.60 -20.61 3.07 -791.88 -2.43 -23.03 16 13 C 0.07 2.19 5.06 86.86 0.44 2.63 16 14 C 0.16 5.23 3.69 46.38 0.17 5.40 16 15 H 0.09 2.71 8.13 -2.39 -0.02 2.69 16 16 N -0.73 -34.63 5.27 -316.39 -1.67 -36.29 16 17 C -0.23 -11.99 9.98 84.03 0.84 -11.15 16 18 H 0.09 4.21 7.83 -2.91 -0.02 4.19 16 19 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 20 N -0.97 -60.80 13.06 21.65 0.28 -60.52 16 21 Si 0.96 46.17 29.55 68.60 2.03 48.19 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 23 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 24 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 25 C -0.12 -3.35 6.05 31.78 0.19 -3.16 16 26 C 0.14 4.39 3.47 45.34 0.16 4.55 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 C -0.15 -3.86 9.11 71.98 0.66 -3.20 16 29 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.08 2.76 6.64 -2.39 -0.02 2.75 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.22 3.83 6.49 -2.91 -0.02 3.81 16 38 H 0.10 2.08 7.71 -2.39 -0.02 2.06 16 39 H 0.06 2.07 6.60 -2.39 -0.02 2.06 16 40 H 0.37 20.05 7.82 -92.70 -0.72 19.33 16 41 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.12 2.31 7.85 -2.39 -0.02 2.29 16 44 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.04 1.38 6.74 -2.39 -0.02 1.37 16 Total: -1.00 -82.80 378.69 2.50 -80.29 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: 0.27 Total: 33.99 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 7.72 Total: 22.56 kcal Atomic # 7 Polarization: -135.38 SS G_CDS: -5.86 Total: -141.24 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -1.65 Total: -43.80 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -82.80 2.50 -80.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989059276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.924 kcal (2) G-P(sol) polarization free energy of solvation -82.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds