Wall clock time and date at job start Tue Mar 31 2020 14:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 114.00007 * 2 1 4 4 C 1.50699 * 109.46885 * 179.97438 * 3 2 1 5 5 N 1.30445 * 125.98657 * 269.99825 * 4 3 2 6 6 N 1.39937 * 108.89742 * 180.02562 * 5 4 3 7 7 C 1.46500 * 125.75878 * 180.02562 * 6 5 4 8 8 C 1.34265 * 108.48816 * 359.75076 * 6 5 4 9 9 C 1.38039 * 107.41746 * 0.39663 * 8 6 5 10 10 C 1.47426 * 126.41651 * 179.86733 * 9 8 6 11 11 O 1.21606 * 120.00122 * 179.68383 * 10 9 8 12 12 N 1.34779 * 119.99935 * 359.69368 * 10 9 8 13 13 C 1.47026 * 125.64696 * 359.94910 * 12 10 9 14 14 C 1.54322 * 107.27058 * 181.10099 * 13 12 10 15 15 H 1.09008 * 110.87264 * 263.76285 * 14 13 12 16 16 N 1.46499 * 110.72017 * 140.55734 * 14 13 12 17 17 C 1.36939 * 119.99933 * 91.75279 * 16 14 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 14 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 14 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47144 * 90.00258 * 21 19 17 23 23 H 1.48500 * 109.47140 * 210.00775 * 21 19 17 24 24 H 1.48502 * 109.46967 * 330.00206 * 21 19 17 25 25 C 1.55160 * 102.94285 * 22.19125 * 14 13 12 26 26 C 1.47422 * 125.65056 * 180.02562 * 12 10 9 27 27 H 1.09005 * 110.36706 * 274.67256 * 26 12 10 28 28 C 1.52999 * 110.36722 * 36.98888 * 26 12 10 29 29 H 1.09006 * 109.47257 * 299.99765 * 1 2 3 30 30 H 1.09003 * 109.47445 * 59.99386 * 1 2 3 31 31 H 1.09002 * 109.47559 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46768 * 59.99833 * 3 2 1 33 33 H 1.08995 * 109.47228 * 300.00170 * 3 2 1 34 34 H 1.09001 * 109.46934 * 89.97224 * 7 6 5 35 35 H 1.08996 * 109.47435 * 209.97357 * 7 6 5 36 36 H 1.08998 * 109.47064 * 329.98025 * 7 6 5 37 37 H 1.07996 * 126.29125 * 180.23948 * 8 6 5 38 38 H 1.09002 * 109.87987 * 61.68363 * 13 12 10 39 39 H 1.08995 * 109.87944 * 300.51463 * 13 12 10 40 40 H 0.97001 * 119.99790 * 271.47253 * 16 14 13 41 41 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 42 42 H 1.09007 * 110.99893 * 82.57580 * 25 14 13 43 43 H 1.09003 * 111.00328 * 206.42242 * 25 14 13 44 44 H 1.09008 * 109.47298 * 175.41298 * 28 26 12 45 45 H 1.08998 * 109.47694 * 295.41276 * 28 26 12 46 46 H 1.09004 * 109.47437 * 55.41384 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2762 1.1261 1.0565 6 7 5.6098 1.0210 0.6458 7 6 6.7734 0.9286 1.5311 8 6 5.6426 1.0129 -0.6964 9 6 4.3407 1.1213 -1.1422 10 6 3.8969 1.1561 -2.5477 11 8 2.7130 1.2490 -2.8094 12 7 4.8034 1.0846 -3.5425 13 6 6.2589 0.9712 -3.3690 14 6 6.8880 0.9495 -4.7780 15 1 7.0706 -0.0739 -5.1061 16 7 8.1280 1.7292 -4.8041 17 6 9.3279 1.1156 -4.5614 18 1 9.3596 0.0576 -4.3464 19 6 10.5034 1.8532 -4.5918 20 7 10.4646 3.1426 -4.8534 21 14 12.1401 1.0163 -4.2600 22 1 12.7105 0.5204 -5.5382 23 1 13.0776 1.9892 -3.6439 24 1 11.9331 -0.1261 -3.3341 25 6 5.7986 1.6211 -5.6553 26 6 4.4997 1.1089 -4.9850 27 1 4.2602 0.1062 -5.3391 28 6 3.3406 2.0662 -5.2691 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 6.9807 -0.1188 1.7505 35 1 7.6387 1.3754 1.0416 36 1 6.5664 1.4602 2.4598 37 1 6.5255 0.9382 -1.3138 38 1 6.4985 0.0477 -2.8418 39 1 6.6333 1.8281 -2.8091 40 1 8.0994 2.6794 -4.9972 41 1 11.2860 3.6581 -4.8743 42 1 5.8656 2.7076 -5.5976 43 1 5.8652 1.2815 -6.6890 44 1 3.1817 2.1353 -6.3453 45 1 2.4350 1.6923 -4.7915 46 1 3.5791 3.0534 -4.8730 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989059278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:34 Heat of formation + Delta-G solvation = 27.528814 kcal Electronic energy + Delta-G solvation = -28118.440257 eV Core-core repulsion = 24239.125065 eV Total energy + Delta-G solvation = -3879.315193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46960 -39.54655 -37.77698 -37.09646 -34.21612 -33.60749 -32.26313 -31.44257 -29.77980 -28.93574 -28.43950 -26.60177 -25.63689 -25.04861 -23.98479 -22.62760 -21.35854 -20.50912 -19.76051 -18.95850 -17.35046 -16.65144 -16.49845 -16.32053 -15.99800 -15.65977 -15.45294 -15.17584 -14.91035 -14.52531 -13.91946 -13.72654 -13.68615 -13.30957 -13.10676 -12.83938 -12.74310 -12.64152 -12.34447 -12.19923 -11.96946 -11.86161 -11.67135 -11.42967 -11.27737 -11.04783 -10.92722 -10.72294 -10.68406 -10.35005 -10.09954 -9.82528 -9.74387 -9.50035 -9.27238 -9.04419 -8.66339 -8.22604 -7.17464 -5.92842 -3.24189 1.59178 2.02178 2.30375 3.31865 3.33209 3.38922 3.40222 3.60187 4.01485 4.37629 4.44785 4.73328 4.87295 4.90343 5.01416 5.08270 5.12521 5.25059 5.27207 5.28275 5.34453 5.37932 5.48150 5.48839 5.53234 5.56619 5.61490 5.64058 5.82293 5.87049 5.91137 6.05924 6.11255 6.16635 6.37604 6.43351 6.47615 6.52286 6.71631 6.78153 6.87771 7.11706 7.54390 7.55310 7.92217 8.24487 8.58100 9.36520 9.90672 10.25662 11.28868 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013704 B = 0.003786 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.691373 B = 7393.623194 C = 9072.632074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.381 6.381 3 C 0.145 3.855 4 C 0.126 3.874 5 N -0.288 5.288 6 N -0.360 5.360 7 C 0.095 3.905 8 C 0.094 3.906 9 C -0.272 4.272 10 C 0.609 3.391 11 O -0.549 6.549 12 N -0.607 5.607 13 C 0.066 3.934 14 C 0.172 3.828 15 H 0.069 0.931 16 N -0.713 5.713 17 C -0.251 4.251 18 H 0.073 0.927 19 C -0.007 4.007 20 N -0.928 5.928 21 Si 0.907 3.093 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.138 4.138 26 C 0.140 3.860 27 H 0.072 0.928 28 C -0.159 4.159 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.202 0.798 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.387 0.613 41 H 0.257 0.743 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.081 0.919 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.447 -3.690 8.333 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.067 3.933 4 C -0.042 4.042 5 N -0.111 5.111 6 N -0.138 5.138 7 C -0.045 4.045 8 C -0.057 4.057 9 C -0.286 4.286 10 C 0.400 3.600 11 O -0.429 6.429 12 N -0.341 5.341 13 C -0.060 4.060 14 C 0.059 3.941 15 H 0.087 0.913 16 N -0.353 5.353 17 C -0.382 4.382 18 H 0.091 0.909 19 C -0.204 4.204 20 N -0.575 5.575 21 Si 0.738 3.262 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.177 4.177 26 C 0.037 3.963 27 H 0.090 0.910 28 C -0.217 4.217 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.218 0.782 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.222 0.778 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.100 0.900 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.656 -3.913 9.667 17.183 hybrid contribution 1.161 0.096 -0.589 1.306 sum -12.495 -3.817 9.078 15.910 Atomic orbital electron populations 1.22706 0.80759 1.02628 1.00001 1.87906 1.19685 1.26836 1.95460 1.20656 0.85011 0.85702 1.01975 1.21853 0.95432 0.97668 0.89221 1.77073 0.86677 1.24621 1.22755 1.48344 1.06100 1.54213 1.05163 1.22042 0.84000 1.03880 0.94610 1.24179 1.00157 0.96401 0.84929 1.20179 0.92110 1.21939 0.94421 1.16807 0.84592 0.75844 0.82801 1.90641 1.16220 1.52260 1.83735 1.48381 1.07401 1.72388 1.05923 1.23533 0.78866 1.00537 1.03043 1.21192 0.86530 0.96134 0.90227 0.91264 1.42400 1.00331 1.08743 1.83794 1.19259 0.84284 0.93417 1.41248 0.90913 1.24775 0.97890 0.95681 1.02081 1.69664 1.27159 1.05678 1.54996 0.86206 0.83904 0.78201 0.77916 1.21555 1.21735 1.20665 1.23184 0.93486 1.01524 0.99485 1.21819 0.95639 0.99093 0.79788 0.91021 1.22118 0.99389 0.99210 1.00957 0.94303 0.93613 0.89744 0.92324 0.89261 0.90149 0.88519 0.88937 0.78207 0.92229 0.90774 0.77822 0.93286 0.90535 0.90174 0.92494 0.89988 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.68 10.69 -35.23 -0.38 -6.06 16 3 C 0.14 2.07 5.97 36.01 0.21 2.28 16 4 C 0.13 2.04 6.89 -82.02 -0.57 1.47 16 5 N -0.29 -4.51 12.50 33.89 0.42 -4.09 16 6 N -0.36 -4.86 3.98 -67.60 -0.27 -5.13 16 7 C 0.10 0.84 11.44 59.85 0.68 1.52 16 8 C 0.09 1.35 9.97 -16.56 -0.17 1.18 16 9 C -0.27 -4.45 6.10 -105.07 -0.64 -5.09 16 10 C 0.61 10.52 7.63 -12.52 -0.10 10.43 16 11 O -0.55 -10.18 12.63 5.27 0.07 -10.12 16 12 N -0.61 -9.75 3.24 -164.32 -0.53 -10.28 16 13 C 0.07 1.07 4.74 -3.06 -0.01 1.05 16 14 C 0.17 3.03 3.62 -66.10 -0.24 2.79 16 15 H 0.07 1.22 8.09 -51.92 -0.42 0.80 16 16 N -0.71 -15.96 5.15 -51.65 -0.27 -16.23 16 17 C -0.25 -6.28 9.96 -15.06 -0.15 -6.43 16 18 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 20 N -0.93 -26.14 13.06 55.49 0.72 -25.42 16 21 Si 0.91 20.77 29.55 -169.99 -5.02 15.74 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 C -0.14 -2.11 6.13 -24.60 -0.15 -2.26 16 26 C 0.14 2.06 3.77 -66.43 -0.25 1.81 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 C -0.16 -2.25 8.59 37.16 0.32 -1.93 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.31 6.55 -51.93 -0.34 0.97 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.20 2.65 4.42 -52.49 -0.23 2.42 16 38 H 0.06 0.90 6.99 -51.93 -0.36 0.54 16 39 H 0.07 1.27 6.75 -51.93 -0.35 0.92 16 40 H 0.39 9.40 7.76 -40.82 -0.32 9.08 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.08 1.24 7.92 -51.92 -0.41 0.83 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 45 H 0.08 1.27 6.09 -51.93 -0.32 0.96 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -31.95 373.71 -6.60 -38.56 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -6.95 Total: 9.36 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -0.04 Total: 8.03 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.08 Total: -61.15 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.31 Total: -16.17 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.95 -6.60 -38.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989059278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.084 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds