Wall clock time and date at job start Tue Mar 31 2020 14:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 114.00007 * 2 1 4 4 C 1.50699 * 109.46885 * 179.97438 * 3 2 1 5 5 N 1.30445 * 125.98657 * 269.99825 * 4 3 2 6 6 N 1.39937 * 108.89742 * 180.02562 * 5 4 3 7 7 C 1.46500 * 125.75878 * 180.02562 * 6 5 4 8 8 C 1.34265 * 108.48816 * 359.75076 * 6 5 4 9 9 C 1.38039 * 107.41746 * 0.39663 * 8 6 5 10 10 C 1.47426 * 126.41651 * 179.86733 * 9 8 6 11 11 O 1.21606 * 120.00122 * 179.68383 * 10 9 8 12 12 N 1.34779 * 119.99935 * 359.69368 * 10 9 8 13 13 C 1.47026 * 125.64696 * 359.94910 * 12 10 9 14 14 C 1.54322 * 107.27058 * 181.10099 * 13 12 10 15 15 H 1.09008 * 110.87264 * 263.76285 * 14 13 12 16 16 N 1.46499 * 110.72017 * 140.55734 * 14 13 12 17 17 C 1.36939 * 119.99933 * 91.75279 * 16 14 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 14 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 14 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47144 * 90.00258 * 21 19 17 23 23 H 1.48500 * 109.47140 * 210.00775 * 21 19 17 24 24 H 1.48502 * 109.46967 * 330.00206 * 21 19 17 25 25 C 1.55160 * 102.94285 * 22.19125 * 14 13 12 26 26 C 1.47422 * 125.65056 * 180.02562 * 12 10 9 27 27 H 1.09005 * 110.36706 * 274.67256 * 26 12 10 28 28 C 1.52999 * 110.36722 * 36.98888 * 26 12 10 29 29 H 1.09006 * 109.47257 * 299.99765 * 1 2 3 30 30 H 1.09003 * 109.47445 * 59.99386 * 1 2 3 31 31 H 1.09002 * 109.47559 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46768 * 59.99833 * 3 2 1 33 33 H 1.08995 * 109.47228 * 300.00170 * 3 2 1 34 34 H 1.09001 * 109.46934 * 89.97224 * 7 6 5 35 35 H 1.08996 * 109.47435 * 209.97357 * 7 6 5 36 36 H 1.08998 * 109.47064 * 329.98025 * 7 6 5 37 37 H 1.07996 * 126.29125 * 180.23948 * 8 6 5 38 38 H 1.09002 * 109.87987 * 61.68363 * 13 12 10 39 39 H 1.08995 * 109.87944 * 300.51463 * 13 12 10 40 40 H 0.97001 * 119.99790 * 271.47253 * 16 14 13 41 41 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 42 42 H 1.09007 * 110.99893 * 82.57580 * 25 14 13 43 43 H 1.09003 * 111.00328 * 206.42242 * 25 14 13 44 44 H 1.09008 * 109.47298 * 175.41298 * 28 26 12 45 45 H 1.08998 * 109.47694 * 295.41276 * 28 26 12 46 46 H 1.09004 * 109.47437 * 55.41384 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2762 1.1261 1.0565 6 7 5.6098 1.0210 0.6458 7 6 6.7734 0.9286 1.5311 8 6 5.6426 1.0129 -0.6964 9 6 4.3407 1.1213 -1.1422 10 6 3.8969 1.1561 -2.5477 11 8 2.7130 1.2490 -2.8094 12 7 4.8034 1.0846 -3.5425 13 6 6.2589 0.9712 -3.3690 14 6 6.8880 0.9495 -4.7780 15 1 7.0706 -0.0739 -5.1061 16 7 8.1280 1.7292 -4.8041 17 6 9.3279 1.1156 -4.5614 18 1 9.3596 0.0576 -4.3464 19 6 10.5034 1.8532 -4.5918 20 7 10.4646 3.1426 -4.8534 21 14 12.1401 1.0163 -4.2600 22 1 12.7105 0.5204 -5.5382 23 1 13.0776 1.9892 -3.6439 24 1 11.9331 -0.1261 -3.3341 25 6 5.7986 1.6211 -5.6553 26 6 4.4997 1.1089 -4.9850 27 1 4.2602 0.1062 -5.3391 28 6 3.3406 2.0662 -5.2691 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 6.9807 -0.1188 1.7505 35 1 7.6387 1.3754 1.0416 36 1 6.5664 1.4602 2.4598 37 1 6.5255 0.9382 -1.3138 38 1 6.4985 0.0477 -2.8418 39 1 6.6333 1.8281 -2.8091 40 1 8.0994 2.6794 -4.9972 41 1 11.2860 3.6581 -4.8743 42 1 5.8656 2.7076 -5.5976 43 1 5.8652 1.2815 -6.6890 44 1 3.1817 2.1353 -6.3453 45 1 2.4350 1.6923 -4.7915 46 1 3.5791 3.0534 -4.8730 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989059278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:33 Heat of formation + Delta-G solvation = 5.656093 kcal Electronic energy + Delta-G solvation = -28119.388730 eV Core-core repulsion = 24239.125065 eV Total energy + Delta-G solvation = -3880.263665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.60693 -40.83364 -38.84778 -38.42963 -35.91090 -34.62469 -33.52571 -33.14148 -30.92570 -30.03834 -29.90187 -27.52739 -26.83690 -26.16401 -25.69138 -23.89186 -22.53689 -21.90818 -20.96559 -20.15899 -19.17333 -17.80649 -17.66092 -17.50817 -17.23156 -16.67675 -16.57094 -16.46432 -16.12998 -15.88903 -15.42479 -15.21274 -15.03632 -14.54440 -14.26753 -14.22279 -13.69554 -13.59829 -13.40656 -13.30507 -13.22244 -13.05440 -12.96098 -12.86868 -12.77078 -12.37149 -12.30434 -12.07798 -12.07357 -11.94556 -11.68315 -11.48516 -10.97200 -10.80252 -10.59046 -10.43615 -9.85034 -9.49343 -9.03026 -7.90867 -5.20815 0.45158 0.84002 1.32568 1.53002 1.54727 1.61951 2.06941 2.35211 2.60035 2.98068 3.34029 3.40593 3.58416 3.67460 3.88588 3.90406 3.98485 4.11403 4.18885 4.24906 4.34932 4.35393 4.38433 4.40461 4.53832 4.55569 4.57090 4.59220 4.65813 4.75404 4.79893 4.80490 4.84744 4.90042 5.16590 5.18486 5.23445 5.32912 5.37724 5.59176 5.61656 5.78426 6.15896 6.29460 6.40088 6.61988 7.27606 7.37693 8.09147 8.33366 9.31916 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013704 B = 0.003786 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.691373 B = 7393.623194 C = 9072.632074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.408 6.408 3 C 0.148 3.852 4 C 0.111 3.889 5 N -0.303 5.303 6 N -0.354 5.354 7 C 0.084 3.916 8 C 0.101 3.899 9 C -0.299 4.299 10 C 0.605 3.395 11 O -0.567 6.567 12 N -0.607 5.607 13 C 0.079 3.921 14 C 0.166 3.834 15 H 0.076 0.924 16 N -0.723 5.723 17 C -0.239 4.239 18 H 0.084 0.916 19 C -0.069 4.069 20 N -0.967 5.967 21 Si 0.966 3.034 22 H -0.293 1.293 23 H -0.301 1.301 24 H -0.264 1.264 25 C -0.126 4.126 26 C 0.139 3.861 27 H 0.085 0.915 28 C -0.150 4.150 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.212 0.788 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.375 0.625 41 H 0.250 0.750 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.529 -5.045 8.921 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.327 6.327 3 C 0.070 3.930 4 C -0.056 4.056 5 N -0.126 5.126 6 N -0.132 5.132 7 C -0.055 4.055 8 C -0.051 4.051 9 C -0.314 4.314 10 C 0.396 3.604 11 O -0.449 6.449 12 N -0.341 5.341 13 C -0.047 4.047 14 C 0.056 3.944 15 H 0.094 0.906 16 N -0.362 5.362 17 C -0.371 4.371 18 H 0.102 0.898 19 C -0.262 4.262 20 N -0.617 5.617 21 Si 0.796 3.204 22 H -0.220 1.220 23 H -0.228 1.228 24 H -0.189 1.189 25 C -0.165 4.165 26 C 0.036 3.964 27 H 0.103 0.897 28 C -0.208 4.208 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.228 0.772 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.208 0.792 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.115 0.885 44 H 0.099 0.901 45 H 0.086 0.914 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.773 -5.316 10.279 17.989 hybrid contribution 1.112 0.473 -0.746 1.420 sum -12.661 -4.843 9.533 16.573 Atomic orbital electron populations 1.22927 0.78720 1.03950 1.01010 1.87856 1.22013 1.27182 1.95643 1.20637 0.84363 0.85728 1.02297 1.22167 0.96365 0.97785 0.89277 1.77018 0.87665 1.25083 1.22876 1.48746 1.06432 1.52622 1.05415 1.22462 0.82874 1.05517 0.94646 1.24255 0.99733 0.95597 0.85529 1.20279 0.93161 1.23786 0.94161 1.16990 0.84474 0.75593 0.83350 1.90627 1.16912 1.53213 1.84112 1.48393 1.07127 1.72162 1.06377 1.23253 0.78851 1.00805 1.01786 1.21366 0.85498 0.95990 0.91567 0.90646 1.42525 1.01272 1.08470 1.83894 1.19656 0.85073 0.93807 1.38537 0.89821 1.25482 1.00992 0.96219 1.03465 1.69814 1.27246 1.07101 1.57587 0.85246 0.80132 0.77419 0.77573 1.22044 1.22835 1.18884 1.23087 0.92682 1.00712 1.00029 1.21939 0.95474 0.99919 0.79039 0.89706 1.22020 0.98330 0.98124 1.02308 0.92334 0.93524 0.88319 0.90544 0.90258 0.88366 0.86825 0.87673 0.77206 0.90863 0.91761 0.79207 0.94146 0.91541 0.88535 0.90112 0.91380 0.94071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -12.01 10.69 -148.98 -1.59 -13.60 16 3 C 0.15 4.21 5.97 71.24 0.43 4.63 16 4 C 0.11 3.56 6.89 43.51 0.30 3.86 16 5 N -0.30 -9.21 12.50 -46.68 -0.58 -9.79 16 6 N -0.35 -9.04 3.98 -367.79 -1.46 -10.51 16 7 C 0.08 1.28 11.44 127.77 1.46 2.74 16 8 C 0.10 2.79 9.97 84.27 0.84 3.63 16 9 C -0.30 -9.68 6.10 -20.15 -0.12 -9.80 16 10 C 0.60 20.71 7.63 86.66 0.66 21.37 16 11 O -0.57 -21.12 12.63 -4.05 -0.05 -21.17 16 12 N -0.61 -18.90 3.24 -792.04 -2.57 -21.47 16 13 C 0.08 2.43 4.74 86.73 0.41 2.84 16 14 C 0.17 5.61 3.62 46.18 0.17 5.78 16 15 H 0.08 2.49 8.09 -2.38 -0.02 2.47 16 16 N -0.72 -31.79 5.15 -317.32 -1.63 -33.43 16 17 C -0.24 -11.67 9.96 84.03 0.84 -10.83 16 18 H 0.08 3.84 7.83 -2.91 -0.02 3.81 16 19 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 20 N -0.97 -55.06 13.06 21.65 0.28 -54.78 16 21 Si 0.97 42.29 29.55 68.60 2.03 44.32 16 22 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 25 C -0.13 -3.67 6.13 31.98 0.20 -3.47 16 26 C 0.14 3.89 3.77 45.46 0.17 4.06 16 27 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 28 C -0.15 -4.07 8.59 71.98 0.62 -3.46 16 29 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.08 2.37 6.55 -2.39 -0.02 2.35 16 34 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.21 5.25 4.42 -2.91 -0.01 5.24 16 38 H 0.07 2.07 6.99 -2.39 -0.02 2.05 16 39 H 0.06 2.14 6.75 -2.39 -0.02 2.12 16 40 H 0.38 18.26 7.76 -92.71 -0.72 17.54 16 41 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 42 H 0.07 2.09 7.92 -2.38 -0.02 2.07 16 43 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.07 2.07 6.09 -2.39 -0.01 2.06 16 46 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -68.21 373.71 2.38 -65.83 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: 0.28 Total: 34.53 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 7.68 Total: 20.06 kcal Atomic # 7 Polarization: -124.00 SS G_CDS: -5.97 Total: -129.97 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -1.64 Total: -34.77 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -68.21 2.38 -65.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989059278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.485 kcal (2) G-P(sol) polarization free energy of solvation -68.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds