Wall clock time and date at job start Tue Mar 31 2020 14:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.00161 * 2 1 4 4 C 1.54331 * 109.87909 * 238.90352 * 2 1 3 5 5 C 1.55149 * 102.94321 * 218.38877 * 4 2 1 6 6 H 1.08993 * 111.00756 * 277.39214 * 5 4 2 7 7 N 1.46504 * 111.00269 * 153.57378 * 5 4 2 8 8 C 1.36943 * 119.99781 * 155.00324 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48504 * 109.47306 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47021 * 119.99661 * 12 10 8 15 15 H 1.48501 * 109.47039 * 240.00078 * 12 10 8 16 16 C 1.54914 * 101.58116 * 35.50250 * 5 4 2 17 17 N 1.47014 * 109.88369 * 121.09890 * 2 1 3 18 18 C 1.34781 * 125.65005 * 298.40047 * 17 2 1 19 19 O 1.21488 * 119.99644 * 359.97438 * 18 17 2 20 20 C 1.48333 * 120.00274 * 180.02562 * 18 17 2 21 21 C 1.42262 * 126.93826 * 180.02562 * 20 18 17 22 22 C 1.35311 * 103.92294 * 179.97438 * 21 20 18 23 23 C 1.50704 * 126.67018 * 179.97438 * 22 21 20 24 24 N 1.46899 * 109.47126 * 89.99723 * 23 22 21 25 25 C 1.46900 * 110.99681 * 66.04813 * 24 23 22 26 26 C 1.46893 * 111.00226 * 190.00068 * 24 23 22 27 27 O 1.34018 * 106.66712 * 359.97438 * 22 21 20 28 28 N 1.20905 * 111.84582 * 359.70668 * 27 22 21 29 29 H 1.08999 * 109.47575 * 181.09658 * 1 2 3 30 30 H 1.09008 * 109.46550 * 301.09615 * 1 2 3 31 31 H 1.09003 * 109.47111 * 61.08992 * 1 2 3 32 32 H 1.09007 * 110.71733 * 100.02519 * 4 2 1 33 33 H 1.08999 * 110.71890 * 336.75990 * 4 2 1 34 34 H 0.97000 * 120.00410 * 335.00650 * 7 5 4 35 35 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 36 36 H 1.09004 * 110.36203 * 81.82860 * 16 5 4 37 37 H 1.08995 * 110.36707 * 204.14386 * 16 5 4 38 38 H 1.07998 * 128.04321 * 359.97438 * 21 20 18 39 39 H 1.08996 * 109.47639 * 210.00248 * 23 22 21 40 40 H 1.09008 * 109.46972 * 330.00467 * 23 22 21 41 41 H 1.09004 * 109.47209 * 60.00032 * 25 24 23 42 42 H 1.09003 * 109.47068 * 179.97438 * 25 24 23 43 43 H 1.08996 * 109.47610 * 300.00344 * 25 24 23 44 44 H 1.09007 * 109.46839 * 60.00337 * 26 24 23 45 45 H 1.09006 * 109.47208 * 179.97438 * 26 24 23 46 46 H 1.08999 * 109.47256 * 300.00605 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2428 5 6 3.2875 -1.5143 -0.6926 6 1 4.1654 -0.8692 -0.6612 7 7 3.5529 -2.7197 -1.4818 8 6 4.8162 -3.2467 -1.5230 9 1 5.6169 -2.7735 -0.9740 10 6 5.0689 -4.3854 -2.2755 11 7 4.0933 -4.9618 -2.9450 12 14 6.7937 -5.0999 -2.3380 13 1 7.7030 -4.2717 -1.5056 14 1 6.7729 -6.4900 -1.8160 15 1 7.2767 -5.1055 -3.7422 16 6 2.8145 -1.8795 0.7367 17 7 2.0300 -0.7141 1.1838 18 6 1.8073 -0.3622 2.4657 19 8 1.1423 0.6226 2.7184 20 6 2.3751 -1.1766 3.5677 21 6 2.2337 -0.9430 4.9639 22 6 2.9280 -1.9542 5.5352 23 6 3.1127 -2.1981 7.0108 24 7 2.0271 -3.0555 7.5051 25 6 2.1077 -4.3988 6.9161 26 6 2.0359 -3.1227 8.9725 27 8 3.4196 -2.6968 4.5337 28 7 3.1020 -2.2601 3.4519 29 1 -0.3634 -1.0274 0.0197 30 1 -0.3633 0.5308 0.8801 31 1 -0.3633 0.4968 -0.8996 32 1 2.3528 -0.0460 -2.0202 33 1 1.3049 -1.4459 -1.6183 34 1 2.8339 -3.1445 -1.9753 35 1 4.2698 -5.7577 -3.4705 36 1 2.1885 -2.7715 0.7127 37 1 3.6716 -2.0340 1.3920 38 1 1.6969 -0.1443 5.4540 39 1 4.0703 -2.6901 7.1808 40 1 3.0940 -1.2461 7.5416 41 1 3.0616 -4.8551 7.1809 42 1 1.2928 -5.0130 7.2993 43 1 2.0288 -4.3254 5.8315 44 1 1.9047 -2.1214 9.3828 45 1 1.2219 -3.7634 9.3117 46 1 2.9871 -3.5326 9.3118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989074173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:04 Heat of formation + Delta-G solvation = 59.832786 kcal Electronic energy + Delta-G solvation = -27608.791132 eV Core-core repulsion = 23730.876745 eV Total energy + Delta-G solvation = -3877.914387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.09691 -39.90863 -37.91144 -37.44027 -34.22550 -34.07086 -32.71521 -31.44786 -31.22647 -28.43117 -27.96195 -27.68668 -25.52913 -24.96131 -23.73046 -23.11250 -22.29009 -21.04041 -20.29733 -18.75234 -17.90985 -17.41742 -17.28826 -16.77431 -16.00463 -15.70237 -15.62524 -15.22295 -14.95113 -14.51104 -14.07161 -13.88665 -13.64539 -13.39338 -13.14258 -13.05940 -12.80137 -12.60762 -12.56310 -12.34274 -12.17024 -12.14050 -12.00562 -11.74869 -11.41809 -11.14759 -11.00041 -10.72074 -10.65985 -10.41468 -10.27099 -10.05633 -9.98094 -9.76088 -9.65829 -9.02282 -8.84339 -8.41965 -7.08787 -5.84550 -3.15208 1.13828 1.60636 2.76984 2.99251 3.28616 3.40012 3.46201 3.48102 3.64391 3.98990 4.23034 4.52883 4.66318 4.78175 4.84110 4.95915 5.00120 5.03336 5.11397 5.21683 5.22702 5.24160 5.28972 5.39529 5.45664 5.48507 5.58111 5.66767 5.72911 5.76584 5.80375 5.83577 6.09928 6.15793 6.25436 6.34227 6.43931 6.45419 6.50725 6.52923 6.64566 6.84413 7.63800 7.66966 7.97503 8.24093 8.32933 9.44962 9.97825 10.33157 11.37544 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.003579 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.904978 B = 7822.211729 C = 9936.056078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.076 0.924 4 C -0.138 4.138 5 C 0.172 3.828 6 H 0.068 0.932 7 N -0.710 5.710 8 C -0.246 4.246 9 H 0.073 0.927 10 C -0.009 4.009 11 N -0.930 5.930 12 Si 0.908 3.092 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.291 1.291 16 C 0.072 3.928 17 N -0.593 5.593 18 C 0.608 3.392 19 O -0.537 6.537 20 C -0.024 4.024 21 C -0.158 4.158 22 C -0.040 4.040 23 C 0.137 3.863 24 N -0.545 5.545 25 C 0.018 3.982 26 C 0.025 3.975 27 O 0.122 5.878 28 N -0.311 5.311 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.387 0.613 35 H 0.256 0.744 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.179 0.821 39 H 0.063 0.937 40 H 0.110 0.890 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.903 6.643 20.472 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.094 0.906 4 C -0.177 4.177 5 C 0.060 3.940 6 H 0.086 0.914 7 N -0.349 5.349 8 C -0.377 4.377 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.577 5.577 12 Si 0.739 3.261 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.218 1.218 16 C -0.054 4.054 17 N -0.326 5.326 18 C 0.394 3.606 19 O -0.414 6.414 20 C -0.183 4.183 21 C -0.182 4.182 22 C -0.104 4.104 23 C 0.009 3.991 24 N -0.270 5.270 25 C -0.130 4.130 26 C -0.123 4.123 27 O 0.045 5.955 28 N -0.011 5.011 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.222 0.778 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.196 0.804 39 H 0.081 0.919 40 H 0.128 0.872 41 H 0.052 0.948 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.089 6.666 19.395 21.130 hybrid contribution 1.042 -0.600 0.525 1.312 sum -4.046 6.066 19.920 21.213 Atomic orbital electron populations 1.22140 0.94870 1.02368 1.02550 1.21599 0.94429 0.96125 0.84243 0.90622 1.23074 0.99300 0.99714 0.95596 1.21304 0.94625 0.89560 0.88535 0.91438 1.42310 1.09670 1.27744 1.55201 1.19301 0.86752 1.07041 1.24610 0.90921 1.24762 0.97679 0.98306 0.99764 1.69666 1.30742 1.22423 1.34879 0.86110 0.83867 0.78876 0.77278 1.20442 1.21741 1.21787 1.23716 0.95048 0.86902 0.99689 1.48497 1.50994 1.29055 1.04041 1.16501 0.80256 0.83389 0.80433 1.90741 1.40545 1.26881 1.83229 1.23471 1.02961 0.96319 0.95554 1.22329 1.02863 1.01822 0.91145 1.24148 0.99897 0.93457 0.92853 1.20510 0.93894 0.99802 0.84902 1.61982 1.44693 1.12633 1.07671 1.22494 1.00841 0.88661 1.00977 1.22399 1.00926 1.02791 0.86167 1.84848 1.55946 1.44639 1.10098 1.74464 1.12903 1.10999 1.02689 0.92453 0.91552 0.91589 0.90093 0.90259 0.77836 0.93399 0.91236 0.89889 0.80352 0.91936 0.87196 0.94810 0.90866 0.91029 0.90940 0.90792 0.95146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.09 37.16 0.34 -1.94 16 2 C 0.14 2.15 3.46 -66.95 -0.23 1.92 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C -0.14 -2.23 6.12 -24.90 -0.15 -2.38 16 5 C 0.17 3.39 3.71 -65.78 -0.24 3.14 16 6 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 7 N -0.71 -17.25 5.24 -51.35 -0.27 -17.52 16 8 C -0.25 -6.66 9.96 -15.06 -0.15 -6.81 16 9 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 10 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 11 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 12 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 C 0.07 1.36 5.87 -2.53 -0.01 1.35 16 17 N -0.59 -10.26 3.06 -163.94 -0.50 -10.76 16 18 C 0.61 10.70 7.67 -12.10 -0.09 10.61 16 19 O -0.54 -10.11 16.00 5.38 0.09 -10.03 16 20 C -0.02 -0.39 7.02 -82.53 -0.58 -0.96 16 21 C -0.16 -2.00 10.92 -39.08 -0.43 -2.43 16 22 C -0.04 -0.45 6.03 -35.35 -0.21 -0.66 16 23 C 0.14 1.04 5.53 -4.97 -0.03 1.01 16 24 N -0.55 -4.38 5.01 -252.72 -1.27 -5.65 16 25 C 0.02 0.15 9.37 60.06 0.56 0.71 16 26 C 0.02 0.14 9.57 60.06 0.57 0.71 16 27 O 0.12 1.68 10.61 17.24 0.18 1.86 16 28 N -0.31 -5.08 9.31 33.29 0.31 -4.77 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.00 6.90 -51.92 -0.36 0.65 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.20 8.14 -51.92 -0.42 0.77 16 33 H 0.08 1.30 7.71 -51.93 -0.40 0.90 16 34 H 0.39 9.96 7.76 -40.82 -0.32 9.64 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 36 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.65 6.24 -51.93 -0.32 1.32 16 38 H 0.18 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 40 H 0.11 0.60 8.06 -51.92 -0.42 0.18 16 41 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 43 H 0.07 0.73 6.83 -51.93 -0.35 0.38 16 44 H 0.07 0.32 8.12 -51.93 -0.42 -0.10 16 45 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 46 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -31.78 378.25 -8.02 -39.80 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -7.21 Total: 7.15 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -0.75 Total: 3.92 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -1.00 Total: -65.45 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.27 Total: -8.16 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.78 -8.02 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989074173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.637 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds