Wall clock time and date at job start Tue Mar 31 2020 14:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.00161 * 2 1 4 4 C 1.54331 * 109.87909 * 238.90352 * 2 1 3 5 5 C 1.55149 * 102.94321 * 218.38877 * 4 2 1 6 6 H 1.08993 * 111.00756 * 277.39214 * 5 4 2 7 7 N 1.46504 * 111.00269 * 153.57378 * 5 4 2 8 8 C 1.36943 * 119.99781 * 155.00324 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48504 * 109.47306 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47021 * 119.99661 * 12 10 8 15 15 H 1.48501 * 109.47039 * 240.00078 * 12 10 8 16 16 C 1.54914 * 101.58116 * 35.50250 * 5 4 2 17 17 N 1.47014 * 109.88369 * 121.09890 * 2 1 3 18 18 C 1.34781 * 125.65005 * 298.40047 * 17 2 1 19 19 O 1.21488 * 119.99644 * 359.97438 * 18 17 2 20 20 C 1.48333 * 120.00274 * 180.02562 * 18 17 2 21 21 C 1.42262 * 126.93826 * 180.02562 * 20 18 17 22 22 C 1.35311 * 103.92294 * 179.97438 * 21 20 18 23 23 C 1.50704 * 126.67018 * 179.97438 * 22 21 20 24 24 N 1.46899 * 109.47126 * 89.99723 * 23 22 21 25 25 C 1.46900 * 110.99681 * 66.04813 * 24 23 22 26 26 C 1.46893 * 111.00226 * 190.00068 * 24 23 22 27 27 O 1.34018 * 106.66712 * 359.97438 * 22 21 20 28 28 N 1.20905 * 111.84582 * 359.70668 * 27 22 21 29 29 H 1.08999 * 109.47575 * 181.09658 * 1 2 3 30 30 H 1.09008 * 109.46550 * 301.09615 * 1 2 3 31 31 H 1.09003 * 109.47111 * 61.08992 * 1 2 3 32 32 H 1.09007 * 110.71733 * 100.02519 * 4 2 1 33 33 H 1.08999 * 110.71890 * 336.75990 * 4 2 1 34 34 H 0.97000 * 120.00410 * 335.00650 * 7 5 4 35 35 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 36 36 H 1.09004 * 110.36203 * 81.82860 * 16 5 4 37 37 H 1.08995 * 110.36707 * 204.14386 * 16 5 4 38 38 H 1.07998 * 128.04321 * 359.97438 * 21 20 18 39 39 H 1.08996 * 109.47639 * 210.00248 * 23 22 21 40 40 H 1.09008 * 109.46972 * 330.00467 * 23 22 21 41 41 H 1.09004 * 109.47209 * 60.00032 * 25 24 23 42 42 H 1.09003 * 109.47068 * 179.97438 * 25 24 23 43 43 H 1.08996 * 109.47610 * 300.00344 * 25 24 23 44 44 H 1.09007 * 109.46839 * 60.00337 * 26 24 23 45 45 H 1.09006 * 109.47208 * 179.97438 * 26 24 23 46 46 H 1.08999 * 109.47256 * 300.00605 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2428 5 6 3.2875 -1.5143 -0.6926 6 1 4.1654 -0.8692 -0.6612 7 7 3.5529 -2.7197 -1.4818 8 6 4.8162 -3.2467 -1.5230 9 1 5.6169 -2.7735 -0.9740 10 6 5.0689 -4.3854 -2.2755 11 7 4.0933 -4.9618 -2.9450 12 14 6.7937 -5.0999 -2.3380 13 1 7.7030 -4.2717 -1.5056 14 1 6.7729 -6.4900 -1.8160 15 1 7.2767 -5.1055 -3.7422 16 6 2.8145 -1.8795 0.7367 17 7 2.0300 -0.7141 1.1838 18 6 1.8073 -0.3622 2.4657 19 8 1.1423 0.6226 2.7184 20 6 2.3751 -1.1766 3.5677 21 6 2.2337 -0.9430 4.9639 22 6 2.9280 -1.9542 5.5352 23 6 3.1127 -2.1981 7.0108 24 7 2.0271 -3.0555 7.5051 25 6 2.1077 -4.3988 6.9161 26 6 2.0359 -3.1227 8.9725 27 8 3.4196 -2.6968 4.5337 28 7 3.1020 -2.2601 3.4519 29 1 -0.3634 -1.0274 0.0197 30 1 -0.3633 0.5308 0.8801 31 1 -0.3633 0.4968 -0.8996 32 1 2.3528 -0.0460 -2.0202 33 1 1.3049 -1.4459 -1.6183 34 1 2.8339 -3.1445 -1.9753 35 1 4.2698 -5.7577 -3.4705 36 1 2.1885 -2.7715 0.7127 37 1 3.6716 -2.0340 1.3920 38 1 1.6969 -0.1443 5.4540 39 1 4.0703 -2.6901 7.1808 40 1 3.0940 -1.2461 7.5416 41 1 3.0616 -4.8551 7.1809 42 1 1.2928 -5.0130 7.2993 43 1 2.0288 -4.3254 5.8315 44 1 1.9047 -2.1214 9.3828 45 1 1.2219 -3.7634 9.3117 46 1 2.9871 -3.5326 9.3118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989074173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:03 Heat of formation + Delta-G solvation = 38.118856 kcal Electronic energy + Delta-G solvation = -27609.732718 eV Core-core repulsion = 23730.876745 eV Total energy + Delta-G solvation = -3878.855974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -46.21759 -41.31122 -38.90970 -38.50880 -36.06937 -35.21255 -33.73924 -33.27441 -32.50700 -30.15926 -28.57824 -28.34521 -26.90055 -26.33604 -25.57744 -24.05129 -23.19466 -22.27111 -21.83358 -20.00631 -19.30207 -19.01683 -18.45531 -18.05312 -17.43825 -16.80336 -16.30787 -16.25434 -16.12860 -15.81831 -15.54028 -15.39436 -14.94806 -14.82758 -14.48886 -14.29344 -13.86733 -13.79160 -13.51715 -13.43260 -13.14509 -13.07509 -12.93010 -12.86748 -12.74788 -12.56278 -12.48271 -12.25901 -12.09974 -12.08924 -11.79019 -11.57454 -11.56085 -11.39390 -11.00718 -10.64711 -9.86031 -9.40472 -9.10119 -7.97685 -5.28122 0.00208 0.58139 1.47425 1.48150 1.57693 1.60821 1.93949 1.99227 2.53525 2.77763 3.05650 3.26133 3.33050 3.59313 3.77032 3.86136 3.90750 3.98826 4.08056 4.11175 4.22167 4.28022 4.36462 4.40529 4.43946 4.56284 4.56347 4.67194 4.72982 4.76081 4.77254 4.82192 4.87853 5.00312 5.01049 5.07338 5.10641 5.16782 5.29068 5.33281 5.50351 5.87273 5.98525 6.22046 6.24827 6.73849 7.03747 7.30887 8.00110 8.25708 9.25238 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.003579 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.904978 B = 7822.211729 C = 9936.056078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 H 0.088 0.912 4 C -0.124 4.124 5 C 0.166 3.834 6 H 0.066 0.934 7 N -0.720 5.720 8 C -0.245 4.245 9 H 0.076 0.924 10 C -0.068 4.068 11 N -0.965 5.965 12 Si 0.970 3.030 13 H -0.267 1.267 14 H -0.294 1.294 15 H -0.292 1.292 16 C 0.092 3.908 17 N -0.595 5.595 18 C 0.606 3.394 19 O -0.551 6.551 20 C -0.050 4.050 21 C -0.163 4.163 22 C -0.020 4.020 23 C 0.137 3.863 24 N -0.560 5.560 25 C 0.019 3.981 26 C 0.025 3.975 27 O 0.122 5.878 28 N -0.343 5.343 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.378 0.622 35 H 0.252 0.748 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.198 0.802 39 H 0.078 0.922 40 H 0.138 0.862 41 H 0.042 0.958 42 H 0.080 0.920 43 H 0.045 0.955 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.520 7.681 22.365 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 H 0.106 0.894 4 C -0.163 4.163 5 C 0.055 3.945 6 H 0.084 0.916 7 N -0.359 5.359 8 C -0.376 4.376 9 H 0.093 0.907 10 C -0.261 4.261 11 N -0.615 5.615 12 Si 0.799 3.201 13 H -0.191 1.191 14 H -0.221 1.221 15 H -0.219 1.219 16 C -0.034 4.034 17 N -0.328 5.328 18 C 0.393 3.607 19 O -0.429 6.429 20 C -0.207 4.207 21 C -0.186 4.186 22 C -0.084 4.084 23 C 0.009 3.991 24 N -0.286 5.286 25 C -0.129 4.129 26 C -0.122 4.122 27 O 0.044 5.956 28 N -0.042 5.042 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.211 0.789 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.215 0.785 39 H 0.096 0.904 40 H 0.156 0.844 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.064 0.936 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.711 7.751 21.316 23.165 hybrid contribution 0.887 -0.885 0.077 1.255 sum -3.824 6.866 21.392 22.790 Atomic orbital electron populations 1.22073 0.93565 1.02031 1.03412 1.21757 0.95455 0.96274 0.83087 0.89442 1.22980 0.97368 0.99578 0.96334 1.21448 0.96201 0.88282 0.88552 0.91558 1.42403 1.08595 1.29027 1.55854 1.19624 0.87824 1.06735 1.23437 0.90654 1.25523 1.01166 0.99132 1.00263 1.69805 1.32577 1.22931 1.36185 0.85126 0.79993 0.77847 0.77098 1.19134 1.22106 1.21878 1.23245 0.94439 0.86832 0.98910 1.48521 1.50927 1.28609 1.04724 1.16731 0.79930 0.83341 0.80684 1.90719 1.41224 1.27528 1.83459 1.23533 1.03935 0.96692 0.96539 1.22571 1.03489 1.02893 0.89691 1.24830 0.97814 0.91880 0.93851 1.20792 0.94527 1.01445 0.82322 1.61970 1.44988 1.12273 1.09326 1.22454 1.01652 0.89396 0.99416 1.22461 1.01598 1.03837 0.84266 1.84804 1.55726 1.44788 1.10256 1.74452 1.13992 1.11649 1.04096 0.93286 0.92541 0.88889 0.88126 0.90433 0.78932 0.93885 0.93222 0.90967 0.78535 0.90432 0.84374 0.93978 0.90154 0.93603 0.89611 0.90530 0.94165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 9.09 71.98 0.65 -3.46 16 2 C 0.14 4.08 3.46 45.34 0.16 4.24 16 3 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 4 C -0.12 -3.88 6.12 31.78 0.19 -3.69 16 5 C 0.17 6.54 3.71 46.38 0.17 6.71 16 6 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 7 N -0.72 -35.46 5.24 -316.38 -1.66 -37.12 16 8 C -0.24 -13.33 9.96 84.03 0.84 -12.49 16 9 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 10 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 11 N -0.97 -58.01 13.06 21.65 0.28 -57.72 16 12 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 14 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 15 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 16 C 0.09 3.54 5.87 86.86 0.51 4.05 16 17 N -0.60 -20.58 3.06 -790.88 -2.42 -23.01 16 18 C 0.61 21.34 7.67 86.93 0.67 22.01 16 19 O -0.55 -20.51 16.00 -3.68 -0.06 -20.56 16 20 C -0.05 -1.59 7.02 42.96 0.30 -1.29 16 21 C -0.16 -3.96 10.92 22.59 0.25 -3.72 16 22 C -0.02 -0.42 6.03 25.01 0.15 -0.27 16 23 C 0.14 1.70 5.53 85.56 0.47 2.17 16 24 N -0.56 -7.75 5.01 -953.46 -4.78 -12.53 16 25 C 0.02 0.29 9.37 127.69 1.20 1.49 16 26 C 0.03 0.20 9.57 127.69 1.22 1.42 16 27 O 0.12 3.36 10.61 71.86 0.76 4.12 16 28 N -0.34 -11.40 9.31 -49.53 -0.46 -11.86 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.65 6.90 -2.38 -0.02 1.63 16 31 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 33 H 0.08 2.49 7.71 -2.39 -0.02 2.47 16 34 H 0.38 19.85 7.76 -92.71 -0.72 19.13 16 35 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 36 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.07 2.94 6.24 -2.39 -0.01 2.93 16 38 H 0.20 3.90 8.06 -2.91 -0.02 3.87 16 39 H 0.08 0.77 8.12 -2.39 -0.02 0.75 16 40 H 0.14 0.98 8.06 -2.38 -0.02 0.96 16 41 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 43 H 0.05 0.93 6.83 -2.39 -0.02 0.92 16 44 H 0.09 0.47 8.12 -2.38 -0.02 0.45 16 45 H 0.08 0.58 8.12 -2.38 -0.02 0.56 16 46 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -69.07 378.25 1.21 -67.86 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.27 Total: 29.35 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 7.25 Total: 13.79 kcal Atomic # 7 Polarization: -133.20 SS G_CDS: -9.04 Total: -142.24 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.70 Total: -16.45 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -69.07 1.21 -67.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989074173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.977 kcal (2) G-P(sol) polarization free energy of solvation -69.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds