Wall clock time and date at job start Tue Mar 31 2020 14:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.87599 * 2 1 4 4 C 1.54326 * 109.88585 * 121.01681 * 2 1 3 5 5 C 1.55156 * 102.94248 * 97.22210 * 4 2 1 6 6 H 1.09002 * 111.00598 * 277.38987 * 5 4 2 7 7 N 1.46501 * 111.00188 * 153.57879 * 5 4 2 8 8 C 1.36935 * 119.99801 * 155.00279 * 7 5 4 9 9 H 1.08003 * 120.00239 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99745 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00372 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46845 * 269.99982 * 12 10 8 14 14 H 1.48503 * 109.47399 * 29.99472 * 12 10 8 15 15 H 1.48498 * 109.47295 * 150.00079 * 12 10 8 16 16 C 1.54909 * 101.58240 * 35.50658 * 5 4 2 17 17 N 1.47025 * 109.88254 * 238.82437 * 2 1 3 18 18 C 1.34776 * 125.64763 * 59.54141 * 17 2 1 19 19 O 1.21499 * 119.99730 * 0.02562 * 18 17 2 20 20 C 1.48330 * 120.00011 * 179.97438 * 18 17 2 21 21 C 1.42272 * 126.93572 * 179.70669 * 20 18 17 22 22 C 1.35319 * 103.92041 * 179.91449 * 21 20 18 23 23 C 1.50697 * 126.66978 * 180.08820 * 22 21 20 24 24 N 1.46898 * 109.46855 * 90.28977 * 23 22 21 25 25 C 1.46904 * 111.00249 * 170.00275 * 24 23 22 26 26 C 1.46901 * 111.00033 * 293.95546 * 24 23 22 27 27 O 1.34027 * 106.66573 * 0.35429 * 22 21 20 28 28 N 1.20898 * 111.84538 * 359.76057 * 27 22 21 29 29 H 1.09004 * 109.47037 * 298.98147 * 1 2 3 30 30 H 1.09004 * 109.47527 * 58.98549 * 1 2 3 31 31 H 1.09000 * 109.47429 * 178.98674 * 1 2 3 32 32 H 1.09002 * 110.71627 * 338.86317 * 4 2 1 33 33 H 1.08998 * 110.86981 * 215.66128 * 4 2 1 34 34 H 0.97000 * 119.99781 * 335.00060 * 7 5 4 35 35 H 0.97000 * 119.99954 * 359.97438 * 11 10 8 36 36 H 1.08996 * 110.37115 * 81.82492 * 16 5 4 37 37 H 1.08998 * 110.37100 * 204.15526 * 16 5 4 38 38 H 1.07990 * 128.04321 * 0.04405 * 21 20 18 39 39 H 1.08998 * 109.47647 * 210.29066 * 23 22 21 40 40 H 1.09004 * 109.47081 * 330.28948 * 23 22 21 41 41 H 1.09003 * 109.46655 * 59.99935 * 25 24 23 42 42 H 1.09000 * 109.47342 * 179.97438 * 25 24 23 43 43 H 1.08995 * 109.47013 * 300.00272 * 25 24 23 44 44 H 1.09003 * 109.47092 * 60.00094 * 26 24 23 45 45 H 1.09001 * 109.47538 * 180.02562 * 26 24 23 46 46 H 1.09004 * 109.47245 * 299.99957 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 6 2.3518 -2.1685 0.6954 6 1 1.4453 -2.7730 0.6649 7 7 3.3937 -2.8291 1.4855 8 6 3.4568 -4.1964 1.5286 9 1 2.7383 -4.7877 0.9803 10 6 4.4437 -4.8223 2.2777 11 7 5.3190 -4.1017 2.9462 12 14 4.5303 -6.6874 2.3359 13 1 3.7048 -7.1862 3.4650 14 1 4.0144 -7.2470 1.0607 15 1 5.9403 -7.1117 2.5282 16 6 2.8568 -1.8508 -0.7342 17 7 2.0299 -0.7157 -1.1829 18 6 1.7750 -0.3881 -2.4652 19 8 1.0773 0.5736 -2.7192 20 6 2.3471 -1.2010 -3.5662 21 6 2.1705 -0.9939 -4.9626 22 6 2.8879 -1.9896 -5.5327 23 6 3.0532 -2.2490 -7.0079 24 7 4.2295 -1.5223 -7.5040 25 6 4.5628 -1.9333 -8.8745 26 6 4.0229 -0.0701 -7.4255 27 8 3.4183 -2.7038 -4.5302 28 7 3.1119 -2.2579 -3.4490 29 1 -0.3633 0.4979 0.8990 30 1 -0.3634 0.5295 -0.8808 31 1 -0.3634 -1.0275 -0.0182 32 1 1.2918 -0.7862 2.0211 33 1 2.9651 -0.2821 1.6214 34 1 4.0388 -2.2980 1.9782 35 1 5.2747 -3.1332 2.9152 36 1 3.9091 -1.5677 -0.7108 37 1 2.7087 -2.7099 -1.3886 38 1 1.5987 -0.2205 -5.4536 39 1 3.1885 -3.3174 -7.1761 40 1 2.1645 -1.9074 -7.5387 41 1 3.7192 -1.7233 -9.5321 42 1 5.4370 -1.3797 -9.2174 43 1 4.7793 -3.0014 -8.8910 44 1 3.8468 0.2164 -6.3886 45 1 4.9085 0.4437 -7.7994 46 1 3.1598 0.2074 -8.0307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989074177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:07 Heat of formation + Delta-G solvation = 61.574369 kcal Electronic energy + Delta-G solvation = -27655.418817 eV Core-core repulsion = 23777.579950 eV Total energy + Delta-G solvation = -3877.838867 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.12678 -40.00182 -38.00539 -37.54485 -34.50973 -34.09553 -32.74796 -31.50186 -31.23458 -28.14944 -28.04133 -27.71229 -25.61206 -25.03394 -23.58140 -23.02009 -22.51956 -21.32144 -20.26596 -18.80275 -17.88924 -17.57342 -17.36099 -16.90902 -15.80270 -15.75354 -15.65281 -15.46028 -15.04286 -14.49833 -14.33323 -13.91904 -13.68342 -13.47394 -13.42979 -13.13427 -12.99504 -12.84921 -12.48065 -12.30389 -12.19843 -12.09220 -12.03023 -11.91370 -11.50395 -11.01874 -10.95506 -10.68606 -10.53476 -10.48333 -10.22890 -10.08922 -10.02251 -9.71914 -9.23210 -9.01968 -8.86724 -8.49690 -7.15269 -6.16269 -3.18460 1.11217 1.51377 2.74212 2.93519 3.21646 3.50790 3.55442 3.57212 3.69513 3.93177 4.25537 4.60098 4.63479 4.70922 4.77606 4.88756 4.93511 4.96656 5.07361 5.12568 5.14154 5.18878 5.22776 5.33057 5.39112 5.45988 5.55475 5.57790 5.59701 5.69691 5.77569 5.79907 5.95104 6.09194 6.16554 6.19730 6.35930 6.41622 6.48178 6.48939 6.56632 6.75950 7.57990 7.75878 7.93888 8.18574 8.69339 9.12665 9.99305 10.12281 11.31625 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011273 B = 0.003486 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.200143 B = 8030.758609 C =10043.895237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.074 0.926 4 C -0.140 4.140 5 C 0.180 3.820 6 H 0.069 0.931 7 N -0.721 5.721 8 C -0.338 4.338 9 H 0.067 0.933 10 C -0.040 4.040 11 N -0.940 5.940 12 Si 1.083 2.917 13 H -0.295 1.295 14 H -0.293 1.293 15 H -0.287 1.287 16 C 0.072 3.928 17 N -0.593 5.593 18 C 0.609 3.391 19 O -0.537 6.537 20 C -0.025 4.025 21 C -0.177 4.177 22 C -0.030 4.030 23 C 0.134 3.866 24 N -0.545 5.545 25 C 0.026 3.974 26 C 0.016 3.984 27 O 0.135 5.865 28 N -0.311 5.311 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.370 0.630 35 H 0.256 0.744 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.177 0.823 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.503 7.562 -21.204 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.092 0.908 4 C -0.179 4.179 5 C 0.067 3.933 6 H 0.087 0.913 7 N -0.362 5.362 8 C -0.469 4.469 9 H 0.085 0.915 10 C -0.238 4.238 11 N -0.585 5.585 12 Si 0.913 3.087 13 H -0.222 1.222 14 H -0.220 1.220 15 H -0.213 1.213 16 C -0.053 4.053 17 N -0.326 5.326 18 C 0.395 3.605 19 O -0.414 6.414 20 C -0.183 4.183 21 C -0.200 4.200 22 C -0.093 4.093 23 C 0.006 3.994 24 N -0.269 5.269 25 C -0.122 4.122 26 C -0.132 4.132 27 O 0.057 5.943 28 N -0.010 5.010 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.204 0.796 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.194 0.806 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.313 5.875 -19.440 20.991 hybrid contribution -1.603 2.245 -1.562 3.170 sum -6.916 8.120 -21.001 23.555 Atomic orbital electron populations 1.22146 0.94668 1.02509 1.02642 1.21559 0.94649 0.95918 0.84185 0.90806 1.23067 1.01764 0.97263 0.95799 1.21221 0.92704 0.91012 0.88362 0.91326 1.42314 1.33658 1.04307 1.55939 1.20081 1.14902 0.82515 1.29371 0.91503 1.25805 0.94320 1.06944 0.96716 1.70862 1.37335 1.06479 1.43813 0.83204 0.76092 0.73962 0.75443 1.22240 1.21996 1.21291 1.23698 0.94572 0.87363 0.99702 1.48480 1.49274 1.30760 1.04052 1.16503 0.80366 0.83221 0.80410 1.90740 1.39252 1.28237 1.83210 1.23414 1.02340 0.97184 0.95383 1.22353 1.04439 1.01698 0.91522 1.24156 0.97960 0.94146 0.93070 1.20493 0.93219 1.01155 0.84569 1.61889 1.35840 1.06129 1.23089 1.22407 1.00579 1.02156 0.87063 1.22537 1.00866 0.87137 1.02676 1.84870 1.54444 1.45136 1.09862 1.74479 1.12742 1.10810 1.02927 0.91605 0.91357 0.92332 0.89893 0.90646 0.79600 0.93302 0.91341 0.89729 0.80602 0.87818 0.90906 0.95240 0.90779 0.90753 0.90868 0.90861 0.95092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.05 37.15 0.34 -1.92 16 2 C 0.14 2.17 3.49 -66.95 -0.23 1.93 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 4 C -0.14 -2.27 6.14 -24.90 -0.15 -2.43 16 5 C 0.18 3.58 3.71 -65.78 -0.24 3.33 16 6 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 7 N -0.72 -17.66 5.24 -51.35 -0.27 -17.92 16 8 C -0.34 -9.34 9.96 -15.06 -0.15 -9.49 16 9 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 10 C -0.04 -1.14 5.50 -17.43 -0.10 -1.24 16 11 N -0.94 -28.68 13.70 55.49 0.76 -27.92 16 12 Si 1.08 25.79 29.92 -169.99 -5.09 20.70 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 C 0.07 1.38 5.87 -2.53 -0.01 1.37 16 17 N -0.59 -10.28 3.08 -163.94 -0.51 -10.79 16 18 C 0.61 10.65 7.66 -12.11 -0.09 10.56 16 19 O -0.54 -9.98 15.86 5.37 0.09 -9.89 16 20 C -0.02 -0.39 7.02 -82.53 -0.58 -0.97 16 21 C -0.18 -2.17 9.60 -39.07 -0.37 -2.54 16 22 C -0.03 -0.33 6.34 -35.35 -0.22 -0.55 16 23 C 0.13 1.00 5.53 -4.98 -0.03 0.97 16 24 N -0.54 -4.37 5.01 -252.72 -1.27 -5.64 16 25 C 0.03 0.14 9.57 60.07 0.57 0.72 16 26 C 0.02 0.12 9.29 60.07 0.56 0.68 16 27 O 0.13 1.92 11.18 17.22 0.19 2.11 16 28 N -0.31 -5.17 9.30 33.29 0.31 -4.86 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.02 6.77 -51.93 -0.35 0.67 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.24 7.83 -51.93 -0.41 0.84 16 33 H 0.07 1.22 8.00 -51.93 -0.42 0.80 16 34 H 0.37 9.29 6.59 -40.82 -0.27 9.02 16 35 H 0.26 7.65 6.77 -40.82 -0.28 7.37 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.71 6.24 -51.93 -0.32 1.39 16 38 H 0.18 1.79 8.06 -52.49 -0.42 1.36 16 39 H 0.10 0.63 8.06 -51.93 -0.42 0.22 16 40 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 41 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.07 0.38 8.12 -51.93 -0.42 -0.05 16 43 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 44 H 0.07 0.66 6.35 -51.93 -0.33 0.33 16 45 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 46 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -33.08 375.25 -7.91 -40.99 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.06 Total: 7.14 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -0.72 Total: 0.42 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -0.97 Total: -67.13 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.28 Total: -7.78 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.09 Total: 20.70 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.08 -7.91 -40.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989074177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.560 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds