Wall clock time and date at job start Tue Mar 31 2020 14:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.87599 * 2 1 4 4 C 1.54326 * 109.88585 * 121.01681 * 2 1 3 5 5 C 1.55156 * 102.94248 * 97.22210 * 4 2 1 6 6 H 1.09002 * 111.00598 * 277.38987 * 5 4 2 7 7 N 1.46501 * 111.00188 * 153.57879 * 5 4 2 8 8 C 1.36935 * 119.99801 * 155.00279 * 7 5 4 9 9 H 1.08003 * 120.00239 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99745 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00372 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46845 * 269.99982 * 12 10 8 14 14 H 1.48503 * 109.47399 * 29.99472 * 12 10 8 15 15 H 1.48498 * 109.47295 * 150.00079 * 12 10 8 16 16 C 1.54909 * 101.58240 * 35.50658 * 5 4 2 17 17 N 1.47025 * 109.88254 * 238.82437 * 2 1 3 18 18 C 1.34776 * 125.64763 * 59.54141 * 17 2 1 19 19 O 1.21499 * 119.99730 * 0.02562 * 18 17 2 20 20 C 1.48330 * 120.00011 * 179.97438 * 18 17 2 21 21 C 1.42272 * 126.93572 * 179.70669 * 20 18 17 22 22 C 1.35319 * 103.92041 * 179.91449 * 21 20 18 23 23 C 1.50697 * 126.66978 * 180.08820 * 22 21 20 24 24 N 1.46898 * 109.46855 * 90.28977 * 23 22 21 25 25 C 1.46904 * 111.00249 * 170.00275 * 24 23 22 26 26 C 1.46901 * 111.00033 * 293.95546 * 24 23 22 27 27 O 1.34027 * 106.66573 * 0.35429 * 22 21 20 28 28 N 1.20898 * 111.84538 * 359.76057 * 27 22 21 29 29 H 1.09004 * 109.47037 * 298.98147 * 1 2 3 30 30 H 1.09004 * 109.47527 * 58.98549 * 1 2 3 31 31 H 1.09000 * 109.47429 * 178.98674 * 1 2 3 32 32 H 1.09002 * 110.71627 * 338.86317 * 4 2 1 33 33 H 1.08998 * 110.86981 * 215.66128 * 4 2 1 34 34 H 0.97000 * 119.99781 * 335.00060 * 7 5 4 35 35 H 0.97000 * 119.99954 * 359.97438 * 11 10 8 36 36 H 1.08996 * 110.37115 * 81.82492 * 16 5 4 37 37 H 1.08998 * 110.37100 * 204.15526 * 16 5 4 38 38 H 1.07990 * 128.04321 * 0.04405 * 21 20 18 39 39 H 1.08998 * 109.47647 * 210.29066 * 23 22 21 40 40 H 1.09004 * 109.47081 * 330.28948 * 23 22 21 41 41 H 1.09003 * 109.46655 * 59.99935 * 25 24 23 42 42 H 1.09000 * 109.47342 * 179.97438 * 25 24 23 43 43 H 1.08995 * 109.47013 * 300.00272 * 25 24 23 44 44 H 1.09003 * 109.47092 * 60.00094 * 26 24 23 45 45 H 1.09001 * 109.47538 * 180.02562 * 26 24 23 46 46 H 1.09004 * 109.47245 * 299.99957 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 6 2.3518 -2.1685 0.6954 6 1 1.4453 -2.7730 0.6649 7 7 3.3937 -2.8291 1.4855 8 6 3.4568 -4.1964 1.5286 9 1 2.7383 -4.7877 0.9803 10 6 4.4437 -4.8223 2.2777 11 7 5.3190 -4.1017 2.9462 12 14 4.5303 -6.6874 2.3359 13 1 3.7048 -7.1862 3.4650 14 1 4.0144 -7.2470 1.0607 15 1 5.9403 -7.1117 2.5282 16 6 2.8568 -1.8508 -0.7342 17 7 2.0299 -0.7157 -1.1829 18 6 1.7750 -0.3881 -2.4652 19 8 1.0773 0.5736 -2.7192 20 6 2.3471 -1.2010 -3.5662 21 6 2.1705 -0.9939 -4.9626 22 6 2.8879 -1.9896 -5.5327 23 6 3.0532 -2.2490 -7.0079 24 7 4.2295 -1.5223 -7.5040 25 6 4.5628 -1.9333 -8.8745 26 6 4.0229 -0.0701 -7.4255 27 8 3.4183 -2.7038 -4.5302 28 7 3.1119 -2.2579 -3.4490 29 1 -0.3633 0.4979 0.8990 30 1 -0.3634 0.5295 -0.8808 31 1 -0.3634 -1.0275 -0.0182 32 1 1.2918 -0.7862 2.0211 33 1 2.9651 -0.2821 1.6214 34 1 4.0388 -2.2980 1.9782 35 1 5.2747 -3.1332 2.9152 36 1 3.9091 -1.5677 -0.7108 37 1 2.7087 -2.7099 -1.3886 38 1 1.5987 -0.2205 -5.4536 39 1 3.1885 -3.3174 -7.1761 40 1 2.1645 -1.9074 -7.5387 41 1 3.7192 -1.7233 -9.5321 42 1 5.4370 -1.3797 -9.2174 43 1 4.7793 -3.0014 -8.8910 44 1 3.8468 0.2164 -6.3886 45 1 4.9085 0.4437 -7.7994 46 1 3.1598 0.2074 -8.0307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989074177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:06 Heat of formation + Delta-G solvation = 38.699752 kcal Electronic energy + Delta-G solvation = -27656.410735 eV Core-core repulsion = 23777.579950 eV Total energy + Delta-G solvation = -3878.830784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.24823 -41.40876 -39.02973 -38.57836 -36.40668 -35.23769 -33.76865 -33.24528 -32.57310 -29.89137 -28.62783 -28.34809 -26.98061 -26.34543 -25.55712 -24.01772 -23.41911 -22.59959 -21.69665 -20.05650 -19.58065 -19.00259 -18.47244 -18.20172 -17.17973 -16.95967 -16.34437 -16.27878 -16.22470 -15.98300 -15.76919 -15.50763 -14.88572 -14.80179 -14.71296 -14.48084 -14.04907 -14.03954 -13.42913 -13.33794 -13.24142 -12.91045 -12.81941 -12.79933 -12.71462 -12.58855 -12.46248 -12.27931 -12.10342 -11.87500 -11.76732 -11.59516 -11.46697 -11.26014 -10.98970 -10.69632 -9.94625 -9.39268 -9.21342 -8.41504 -5.38071 -0.03117 0.51174 1.52973 1.59339 1.69257 1.83517 1.89912 1.95058 2.66026 2.73983 3.00842 3.22740 3.33739 3.51785 3.68985 3.77420 3.82183 3.92591 3.95977 4.01326 4.16545 4.21696 4.29234 4.32172 4.41195 4.47405 4.55022 4.58098 4.71124 4.72824 4.74651 4.76017 4.82528 4.88003 5.00053 5.01048 5.09231 5.09870 5.16703 5.30120 5.57529 5.89231 5.99050 6.15859 6.47665 6.67521 7.00625 7.03136 7.92140 8.02681 9.10005 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011273 B = 0.003486 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.200143 B = 8030.758609 C =10043.895237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 H 0.084 0.916 4 C -0.126 4.126 5 C 0.173 3.827 6 H 0.063 0.937 7 N -0.733 5.733 8 C -0.335 4.335 9 H 0.066 0.934 10 C -0.097 4.097 11 N -0.972 5.972 12 Si 1.127 2.873 13 H -0.282 1.282 14 H -0.275 1.275 15 H -0.293 1.293 16 C 0.092 3.908 17 N -0.595 5.595 18 C 0.607 3.393 19 O -0.549 6.549 20 C -0.050 4.050 21 C -0.175 4.175 22 C -0.011 4.011 23 C 0.134 3.866 24 N -0.567 5.567 25 C 0.027 3.973 26 C 0.016 3.984 27 O 0.130 5.870 28 N -0.345 5.345 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.365 0.635 35 H 0.246 0.754 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.197 0.803 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.052 0.948 45 H 0.076 0.924 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.719 7.576 -23.067 25.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.035 3.965 3 H 0.102 0.898 4 C -0.164 4.164 5 C 0.063 3.937 6 H 0.081 0.919 7 N -0.373 5.373 8 C -0.466 4.466 9 H 0.084 0.916 10 C -0.289 4.289 11 N -0.619 5.619 12 Si 0.952 3.048 13 H -0.209 1.209 14 H -0.200 1.200 15 H -0.219 1.219 16 C -0.034 4.034 17 N -0.328 5.328 18 C 0.394 3.606 19 O -0.427 6.427 20 C -0.207 4.207 21 C -0.199 4.199 22 C -0.075 4.075 23 C 0.006 3.994 24 N -0.292 5.292 25 C -0.120 4.120 26 C -0.131 4.131 27 O 0.051 5.949 28 N -0.044 5.044 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.198 0.802 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.214 0.786 39 H 0.138 0.862 40 H 0.118 0.882 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.576 5.926 -21.333 23.097 hybrid contribution -1.244 2.306 -1.126 2.852 sum -7.820 8.232 -22.459 25.166 Atomic orbital electron populations 1.22086 0.93112 1.02322 1.03571 1.21716 0.95841 0.95973 0.82980 0.89812 1.22974 1.02456 0.94457 0.96558 1.21350 0.91178 0.92761 0.88459 0.91853 1.42414 1.34659 1.03555 1.56697 1.20363 1.14119 0.84057 1.28056 0.91592 1.27150 0.94300 1.10599 0.96835 1.70965 1.38951 1.06105 1.45916 0.82628 0.75895 0.69670 0.76592 1.20897 1.20026 1.21933 1.23212 0.93684 0.87654 0.98852 1.48498 1.49165 1.30348 1.04792 1.16732 0.80065 0.83181 0.80617 1.90719 1.39834 1.28775 1.83400 1.23500 1.03164 0.97533 0.96486 1.22590 1.04888 1.02505 0.89870 1.24863 0.95955 0.92659 0.94023 1.20748 0.94408 1.02308 0.81903 1.61853 1.36207 1.06348 1.24818 1.22446 1.01223 1.02530 0.85845 1.22511 1.01807 0.87154 1.01677 1.84818 1.54447 1.45464 1.10126 1.74471 1.13922 1.11698 1.04320 0.88849 0.92287 0.92952 0.88031 0.90583 0.80245 0.94352 0.93278 0.91008 0.78563 0.86222 0.88193 0.93784 0.90585 0.90166 0.92894 0.90485 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.05 71.98 0.65 -3.36 16 2 C 0.14 4.10 3.49 45.34 0.16 4.26 16 3 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 4 C -0.13 -3.97 6.14 31.78 0.20 -3.77 16 5 C 0.17 6.95 3.71 46.38 0.17 7.12 16 6 H 0.06 2.61 8.09 -2.39 -0.02 2.59 16 7 N -0.73 -36.43 5.24 -316.37 -1.66 -38.09 16 8 C -0.33 -18.66 9.96 84.03 0.84 -17.82 16 9 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 10 C -0.10 -5.60 5.50 84.86 0.47 -5.13 16 11 N -0.97 -60.33 13.70 21.65 0.30 -60.03 16 12 Si 1.13 51.97 29.92 68.60 2.05 54.02 16 13 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 15 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 16 C 0.09 3.61 5.87 86.85 0.51 4.12 16 17 N -0.60 -20.67 3.08 -790.88 -2.44 -23.10 16 18 C 0.61 21.23 7.66 86.93 0.67 21.89 16 19 O -0.55 -20.09 15.86 -3.71 -0.06 -20.14 16 20 C -0.05 -1.58 7.02 42.96 0.30 -1.28 16 21 C -0.18 -4.11 9.60 22.60 0.22 -3.89 16 22 C -0.01 -0.23 6.34 25.01 0.16 -0.07 16 23 C 0.13 1.65 5.53 85.56 0.47 2.12 16 24 N -0.57 -7.84 5.01 -953.46 -4.78 -12.61 16 25 C 0.03 0.22 9.57 127.69 1.22 1.44 16 26 C 0.02 0.22 9.29 127.69 1.19 1.40 16 27 O 0.13 3.67 11.18 71.79 0.80 4.47 16 28 N -0.35 -11.68 9.30 -49.52 -0.46 -12.15 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 1.68 6.77 -2.39 -0.02 1.66 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.10 2.84 7.83 -2.39 -0.02 2.82 16 33 H 0.08 2.41 8.00 -2.39 -0.02 2.39 16 34 H 0.36 18.78 6.59 -92.71 -0.61 18.17 16 35 H 0.25 15.14 6.77 -92.71 -0.63 14.51 16 36 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.07 3.01 6.24 -2.39 -0.01 2.99 16 38 H 0.20 3.63 8.06 -2.92 -0.02 3.61 16 39 H 0.12 1.11 8.06 -2.39 -0.02 1.09 16 40 H 0.10 0.74 8.12 -2.39 -0.02 0.72 16 41 H 0.04 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.08 0.61 8.12 -2.39 -0.02 0.59 16 43 H 0.08 0.58 8.12 -2.39 -0.02 0.56 16 44 H 0.05 0.90 6.35 -2.39 -0.02 0.89 16 45 H 0.08 0.92 8.12 -2.39 -0.02 0.90 16 46 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -72.20 375.25 1.49 -70.70 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.52 Total: 29.90 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 7.21 Total: 7.03 kcal Atomic # 7 Polarization: -136.95 SS G_CDS: -9.03 Total: -145.98 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.74 Total: -15.67 kcal Atomic # 14 Polarization: 51.97 SS G_CDS: 2.05 Total: 54.02 kcal Total: -72.20 1.49 -70.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989074177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.402 kcal (2) G-P(sol) polarization free energy of solvation -72.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds