Wall clock time and date at job start Tue Mar 31 2020 14:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.87741 * 2 1 4 4 C 1.54327 * 110.01014 * 121.09743 * 2 1 3 5 5 C 1.55162 * 102.94062 * 141.68239 * 4 2 1 6 6 H 1.08999 * 111.00169 * 82.61268 * 5 4 2 7 7 N 1.46506 * 111.00181 * 206.42034 * 5 4 2 8 8 C 1.36935 * 120.00156 * 205.00113 * 7 5 4 9 9 H 1.08004 * 119.99802 * 0.02562 * 8 7 5 10 10 C 1.38807 * 120.00336 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99649 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00148 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47216 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.47158 * 120.00116 * 12 10 8 15 15 H 1.48500 * 109.47366 * 239.99933 * 12 10 8 16 16 C 1.55126 * 101.48661 * 324.33122 * 5 4 2 17 17 N 1.47029 * 109.88248 * 238.97898 * 2 1 3 18 18 C 1.34771 * 125.64626 * 61.45125 * 17 2 1 19 19 O 1.21500 * 120.00128 * 359.97438 * 18 17 2 20 20 C 1.48325 * 120.00086 * 179.97438 * 18 17 2 21 21 C 1.42276 * 126.93997 * 180.29943 * 20 18 17 22 22 C 1.35321 * 103.92084 * 180.12064 * 21 20 18 23 23 C 1.50695 * 126.66222 * 179.87625 * 22 21 20 24 24 N 1.46905 * 109.46944 * 89.71373 * 23 22 21 25 25 C 1.46906 * 110.99995 * 66.04457 * 24 23 22 26 26 C 1.46897 * 111.00158 * 189.99717 * 24 23 22 27 27 O 1.34017 * 106.66597 * 359.61949 * 22 21 20 28 28 N 1.20900 * 111.84906 * 0.26075 * 27 22 21 29 29 H 1.09009 * 109.47383 * 179.56474 * 1 2 3 30 30 H 1.08997 * 109.47353 * 299.56259 * 1 2 3 31 31 H 1.08998 * 109.47299 * 59.56741 * 1 2 3 32 32 H 1.08998 * 110.71818 * 260.04145 * 4 2 1 33 33 H 1.08999 * 110.72083 * 23.31981 * 4 2 1 34 34 H 0.96998 * 119.99659 * 24.99733 * 7 5 4 35 35 H 0.97001 * 119.99721 * 179.97438 * 11 10 8 36 36 H 1.09001 * 110.49342 * 278.45156 * 16 5 4 37 37 H 1.09000 * 110.34385 * 156.06119 * 16 5 4 38 38 H 1.07997 * 128.04150 * 0.02562 * 21 20 18 39 39 H 1.09002 * 109.47567 * 329.71624 * 23 22 21 40 40 H 1.09005 * 109.47213 * 209.70774 * 23 22 21 41 41 H 1.08992 * 109.47459 * 183.95199 * 25 24 23 42 42 H 1.09004 * 109.47040 * 303.95350 * 25 24 23 43 43 H 1.09000 * 109.47033 * 63.95302 * 25 24 23 44 44 H 1.09001 * 109.47083 * 300.00451 * 26 24 23 45 45 H 1.08995 * 109.47328 * 59.99707 * 26 24 23 46 46 H 1.08993 * 109.47494 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0580 -0.7490 1.2417 5 6 3.2918 -1.5108 0.6894 6 1 4.1683 -0.8636 0.6572 7 7 3.5610 -2.7159 1.4778 8 6 4.8254 -3.2401 1.5171 9 1 5.6243 -2.7649 0.9672 10 6 5.0807 -4.3816 2.2646 11 7 4.1071 -4.9604 2.9351 12 14 6.8053 -5.0970 2.3176 13 1 7.7116 -4.2664 1.4846 14 1 7.2939 -5.1078 3.7200 15 1 6.7818 -6.4853 1.7910 16 6 2.8130 -1.8794 -0.7394 17 7 2.0300 -0.7126 -1.1849 18 6 1.8049 -0.3605 -2.4662 19 8 1.1367 0.6226 -2.7177 20 6 2.3730 -1.1731 -3.5694 21 6 2.2346 -0.9355 -4.9653 22 6 2.9260 -1.9480 -5.5380 23 6 3.1094 -2.1905 -7.0140 24 7 4.3129 -1.4885 -7.4797 25 6 5.5236 -2.0631 -6.8780 26 6 4.3963 -1.5027 -8.9462 27 8 3.4207 -2.6898 -4.5375 28 7 3.1081 -2.2512 -3.4551 29 1 -0.3634 -1.0277 -0.0078 30 1 -0.3634 0.5070 0.8938 31 1 -0.3634 0.5205 -0.8860 32 1 2.3557 -0.0451 2.0189 33 1 1.3103 -1.4472 1.6179 34 1 2.8435 -3.1424 1.9720 35 1 4.2854 -5.7583 3.4571 36 1 2.1852 -2.7701 -0.7135 37 1 3.6681 -2.0360 -1.3969 38 1 1.7004 -0.1343 -5.4543 39 1 2.2393 -1.8176 -7.5544 40 1 3.2193 -3.2597 -7.1956 41 1 6.3929 -1.4814 -7.1843 42 1 5.4355 -2.0403 -5.7917 43 1 5.6407 -3.0943 -7.2114 44 1 4.4349 -2.5337 -9.2980 45 1 3.5195 -1.0087 -9.3649 46 1 5.2965 -0.9768 -9.2641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989074180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:10 Heat of formation + Delta-G solvation = 59.892335 kcal Electronic energy + Delta-G solvation = -27617.670464 eV Core-core repulsion = 23739.758659 eV Total energy + Delta-G solvation = -3877.911805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.09912 -39.90623 -37.91064 -37.43366 -34.22495 -34.07211 -32.71533 -31.44601 -31.22425 -28.43025 -27.96294 -27.68620 -25.52860 -24.96086 -23.73091 -23.11373 -22.28842 -21.04019 -20.29753 -18.75820 -17.90637 -17.41470 -17.29131 -16.77811 -16.00605 -15.69725 -15.62297 -15.22809 -14.94942 -14.51039 -14.07471 -13.88924 -13.64561 -13.38987 -13.13736 -13.05950 -12.81124 -12.59445 -12.56058 -12.34826 -12.17473 -12.13755 -12.00611 -11.75263 -11.42032 -11.14644 -10.99927 -10.71887 -10.65605 -10.41629 -10.27196 -10.05531 -9.98036 -9.75974 -9.65990 -9.02211 -8.84364 -8.42059 -7.08686 -5.84576 -3.15180 1.13685 1.60410 2.76849 2.99325 3.28254 3.40062 3.46302 3.48211 3.64545 3.98894 4.23138 4.52963 4.66402 4.78493 4.84261 4.95806 4.99976 5.03168 5.11116 5.20923 5.22478 5.25440 5.28805 5.39431 5.45827 5.48435 5.58156 5.66934 5.73172 5.76346 5.80283 5.83042 6.09666 6.15643 6.25398 6.34033 6.44001 6.45097 6.50751 6.52462 6.64695 6.84448 7.63882 7.66995 7.97393 8.24034 8.32955 9.44979 9.97809 10.33182 11.37535 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010246 B = 0.003696 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.209322 B = 7574.347167 C = 9933.996372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.076 0.924 4 C -0.138 4.138 5 C 0.173 3.827 6 H 0.068 0.932 7 N -0.710 5.710 8 C -0.246 4.246 9 H 0.073 0.927 10 C -0.009 4.009 11 N -0.930 5.930 12 Si 0.908 3.092 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.290 1.290 16 C 0.072 3.928 17 N -0.593 5.593 18 C 0.608 3.392 19 O -0.537 6.537 20 C -0.024 4.024 21 C -0.158 4.158 22 C -0.040 4.040 23 C 0.137 3.863 24 N -0.545 5.545 25 C 0.018 3.982 26 C 0.025 3.975 27 O 0.122 5.878 28 N -0.311 5.311 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.387 0.613 35 H 0.256 0.744 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.179 0.821 39 H 0.110 0.890 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.033 0.967 44 H 0.030 0.970 45 H 0.072 0.928 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.734 7.477 -20.428 22.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.094 0.906 4 C -0.177 4.177 5 C 0.060 3.940 6 H 0.086 0.914 7 N -0.349 5.349 8 C -0.377 4.377 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.577 5.577 12 Si 0.739 3.261 13 H -0.204 1.204 14 H -0.218 1.218 15 H -0.217 1.217 16 C -0.054 4.054 17 N -0.326 5.326 18 C 0.394 3.606 19 O -0.414 6.414 20 C -0.183 4.183 21 C -0.181 4.181 22 C -0.104 4.104 23 C 0.009 3.991 24 N -0.270 5.270 25 C -0.130 4.130 26 C -0.123 4.123 27 O 0.045 5.955 28 N -0.011 5.011 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.222 0.778 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.197 0.803 39 H 0.128 0.872 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.091 0.909 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.496 7.786 -19.348 21.147 hybrid contribution 0.413 -1.028 -0.541 1.233 sum -3.083 6.758 -19.889 21.230 Atomic orbital electron populations 1.22140 0.94889 1.02337 1.02578 1.21599 0.94409 0.96165 0.84225 0.90630 1.23073 0.99289 0.99727 0.95596 1.21352 0.94586 0.89560 0.88515 0.91377 1.42310 1.09642 1.27769 1.55200 1.19302 0.86743 1.06921 1.24729 0.90912 1.24763 0.97696 0.98256 0.99808 1.69673 1.30815 1.22240 1.35004 0.86108 0.83856 0.78879 0.77279 1.20435 1.21782 1.21747 1.23762 0.95059 0.86823 0.99738 1.48498 1.51007 1.29038 1.04039 1.16501 0.80285 0.83364 0.80437 1.90744 1.40446 1.26949 1.83269 1.23475 1.02781 0.96478 0.95565 1.22336 1.03801 1.00861 0.91134 1.24149 0.99608 0.93728 0.92885 1.20510 0.95156 0.98439 0.85016 1.61989 1.02202 1.54712 1.08080 1.22499 0.92039 0.97713 1.00761 1.22395 1.03335 1.00395 0.86148 1.84847 1.55857 1.44744 1.10094 1.74460 1.12637 1.11331 1.02636 0.92472 0.91592 0.91530 0.90091 0.90267 0.77844 0.93407 0.91237 0.89862 0.80347 0.87197 0.91946 0.90831 0.91009 0.94826 0.95150 0.90933 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.11 37.16 0.34 -1.93 16 2 C 0.14 2.15 3.45 -66.95 -0.23 1.92 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C -0.14 -2.23 6.13 -24.89 -0.15 -2.38 16 5 C 0.17 3.39 3.73 -65.66 -0.24 3.15 16 6 H 0.07 1.37 8.09 -51.93 -0.42 0.95 16 7 N -0.71 -17.25 5.24 -51.23 -0.27 -17.52 16 8 C -0.25 -6.66 9.96 -15.06 -0.15 -6.81 16 9 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 10 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 11 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 12 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 C 0.07 1.36 5.89 -2.41 -0.01 1.34 16 17 N -0.59 -10.25 3.06 -163.80 -0.50 -10.76 16 18 C 0.61 10.70 7.67 -12.11 -0.09 10.61 16 19 O -0.54 -10.11 15.98 5.37 0.09 -10.03 16 20 C -0.02 -0.38 7.02 -82.53 -0.58 -0.96 16 21 C -0.16 -2.00 10.92 -39.07 -0.43 -2.43 16 22 C -0.04 -0.45 6.03 -35.35 -0.21 -0.66 16 23 C 0.14 1.04 5.53 -4.98 -0.03 1.01 16 24 N -0.55 -4.39 5.01 -252.72 -1.27 -5.66 16 25 C 0.02 0.15 9.43 60.07 0.57 0.71 16 26 C 0.03 0.14 9.57 60.06 0.57 0.71 16 27 O 0.12 1.68 10.49 17.24 0.18 1.86 16 28 N -0.31 -5.08 9.30 33.29 0.31 -4.77 16 29 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.00 6.87 -51.93 -0.36 0.65 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.30 7.72 -51.93 -0.40 0.89 16 34 H 0.39 9.95 7.76 -40.82 -0.32 9.63 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.65 6.22 -51.93 -0.32 1.33 16 38 H 0.18 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.11 0.60 8.06 -51.93 -0.42 0.18 16 40 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.73 6.63 -51.93 -0.34 0.39 16 43 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 44 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.07 0.32 8.12 -51.93 -0.42 -0.10 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -31.78 378.00 -8.01 -39.79 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.20 Total: 7.17 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -0.75 Total: 3.93 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -1.00 Total: -65.46 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.27 Total: -8.17 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.78 -8.01 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989074180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.679 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds