Wall clock time and date at job start Tue Mar 31 2020 14:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99933 * 2 1 4 4 C 1.53002 * 109.46974 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47208 * 180.02562 * 4 3 2 6 6 C 1.35023 * 124.88700 * 124.99907 * 5 4 3 7 7 C 1.35367 * 107.22857 * 180.02562 * 6 5 4 8 8 C 1.41500 * 105.50138 * 359.97438 * 7 6 5 9 9 C 1.47706 * 126.51601 * 180.02562 * 8 7 6 10 10 O 1.21575 * 120.00117 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00325 * 179.97438 * 9 8 7 12 12 C 1.47422 * 125.64361 * 359.94729 * 11 9 8 13 13 C 1.54906 * 104.83284 * 204.17309 * 12 11 9 14 14 H 1.09000 * 111.03945 * 204.89940 * 13 12 11 15 15 N 1.46504 * 111.00538 * 81.06220 * 13 12 11 16 16 C 1.36943 * 119.99781 * 92.80655 * 15 13 12 17 17 H 1.08002 * 119.99788 * 359.97438 * 16 15 13 18 18 C 1.38811 * 119.99622 * 180.27904 * 16 15 13 19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15 21 21 H 1.48504 * 109.47306 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47021 * 119.99661 * 20 18 16 23 23 H 1.48501 * 109.47039 * 240.00078 * 20 18 16 24 24 C 1.55153 * 101.58297 * 322.99022 * 13 12 11 25 25 C 1.47023 * 125.65309 * 179.97438 * 11 9 8 26 26 H 1.08997 * 109.88266 * 59.47387 * 25 11 9 27 27 C 1.53003 * 109.87964 * 298.31322 * 25 11 9 28 28 N 1.28473 * 124.87811 * 305.33320 * 5 4 3 29 29 H 1.08995 * 109.47030 * 300.00606 * 1 2 3 30 30 H 1.09003 * 109.46542 * 60.00027 * 1 2 3 31 31 H 1.08995 * 109.47008 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47114 * 59.99882 * 3 2 1 33 33 H 1.08996 * 109.47062 * 299.99696 * 3 2 1 34 34 H 1.08995 * 109.47490 * 59.99643 * 4 3 2 35 35 H 1.09006 * 109.47130 * 299.99765 * 4 3 2 36 36 H 1.08003 * 126.38588 * 359.97438 * 6 5 4 37 37 H 1.08000 * 127.24587 * 179.97438 * 7 6 5 38 38 H 1.09006 * 110.36998 * 85.33360 * 12 11 9 39 39 H 1.09005 * 110.37180 * 323.01170 * 12 11 9 40 40 H 0.97000 * 120.00410 * 272.80980 * 15 13 12 41 41 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 42 42 H 1.09003 * 110.72723 * 153.86049 * 24 13 12 43 43 H 1.09000 * 110.72556 * 277.13946 * 24 13 12 44 44 H 1.09002 * 109.46729 * 302.19093 * 27 25 11 45 45 H 1.08997 * 109.47153 * 62.19314 * 27 25 11 46 46 H 1.08998 * 109.46547 * 182.19329 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5230 0.0013 6 6 5.0255 2.9699 0.9091 7 6 5.3347 4.2443 0.5735 8 6 4.5729 4.5258 -0.5852 9 6 4.5588 5.7947 -1.3410 10 8 5.2505 6.7263 -0.9779 11 7 3.7791 5.9200 -2.4332 12 6 2.8959 4.8753 -2.9827 13 6 2.7322 5.2412 -4.4790 14 1 1.8025 4.8383 -4.8809 15 7 3.8822 4.7806 -5.2612 16 6 3.8502 3.5533 -5.8680 17 1 2.9774 2.9249 -5.7695 18 6 4.9421 3.1146 -6.6042 19 7 6.0060 3.8802 -6.7237 20 14 4.9016 1.4373 -7.4255 21 1 3.6019 0.7778 -7.1405 22 1 5.0632 1.6005 -8.8926 23 1 6.0076 0.5999 -6.8957 24 6 2.6862 6.7908 -4.4176 25 6 3.6688 7.1209 -3.2742 26 1 4.6451 7.3756 -3.6866 27 6 3.1299 8.2887 -2.4455 28 7 3.8738 3.4423 -0.8584 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8575 0.6435 -0.8890 35 1 3.8568 0.6439 0.8909 36 1 5.4197 2.4144 1.7472 37 1 6.0189 4.9067 1.0829 38 1 1.9290 4.8928 -2.4799 39 1 3.3597 3.8941 -2.8807 40 1 4.6662 5.3449 -5.3492 41 1 6.7688 3.5737 -7.2384 42 1 3.0282 7.2244 -5.3574 43 1 1.6818 7.1376 -4.1746 44 1 2.1630 8.0177 -2.0216 45 1 3.8288 8.5160 -1.6406 46 1 3.0141 9.1644 -3.0842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989151266.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:01 Heat of formation + Delta-G solvation = 26.015846 kcal Electronic energy + Delta-G solvation = -28207.080903 eV Core-core repulsion = 24327.700103 eV Total energy + Delta-G solvation = -3879.380800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.55968 -39.53611 -38.25908 -37.13864 -34.02086 -33.90811 -31.70591 -31.23637 -30.43621 -29.39014 -28.35450 -26.65149 -25.37206 -24.54029 -23.65305 -22.65128 -21.43180 -20.76899 -19.87300 -18.68893 -17.47767 -17.24102 -16.71356 -16.50155 -16.26682 -15.82654 -15.70103 -14.88830 -14.66472 -14.47075 -13.95639 -13.72227 -13.64242 -13.34442 -13.28860 -13.06345 -12.85871 -12.58509 -12.27352 -12.13221 -11.88886 -11.81376 -11.63183 -11.52242 -11.09886 -11.00964 -10.84981 -10.63993 -10.30536 -10.22330 -10.03921 -9.94711 -9.67672 -9.63048 -9.14550 -8.99236 -8.96017 -8.09128 -6.97097 -5.77545 -3.07040 1.80597 2.24330 2.28401 3.39622 3.41631 3.46831 3.49554 3.60552 3.81802 4.31140 4.56905 4.57180 4.73356 4.81416 4.90369 5.01634 5.03718 5.10988 5.25428 5.32879 5.36090 5.38060 5.40841 5.52899 5.61001 5.67995 5.74649 5.77418 5.85656 5.92103 5.98081 6.11256 6.31989 6.35593 6.45681 6.51586 6.57496 6.67604 6.75241 6.78182 6.81275 7.07253 7.68881 7.96154 8.08367 8.39863 8.64290 9.51533 10.08026 10.42748 11.44743 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.007524 B = 0.005296 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3720.573758 B = 5285.463675 C = 7283.334880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.051 3.949 4 C 0.125 3.875 5 N -0.286 5.286 6 C -0.020 4.020 7 C -0.181 4.181 8 C -0.002 4.002 9 C 0.615 3.385 10 O -0.548 6.548 11 N -0.585 5.585 12 C 0.074 3.926 13 C 0.166 3.834 14 H 0.072 0.928 15 N -0.711 5.711 16 C -0.241 4.241 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.929 5.929 20 Si 0.905 3.095 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.293 1.293 24 C -0.139 4.139 25 C 0.138 3.862 26 H 0.075 0.925 27 C -0.159 4.159 28 N -0.245 5.245 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.180 0.820 37 H 0.161 0.839 38 H 0.049 0.951 39 H 0.098 0.902 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.984 -2.548 16.443 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.308 6.308 3 C -0.027 4.027 4 C 0.004 3.996 5 N -0.075 5.075 6 C -0.162 4.162 7 C -0.209 4.209 8 C -0.163 4.163 9 C 0.402 3.598 10 O -0.425 6.425 11 N -0.316 5.316 12 C -0.052 4.052 13 C 0.054 3.946 14 H 0.090 0.910 15 N -0.351 5.351 16 C -0.372 4.372 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.576 5.576 20 Si 0.736 3.264 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.220 1.220 24 C -0.178 4.178 25 C 0.035 3.965 26 H 0.093 0.907 27 C -0.217 4.217 28 N -0.081 5.081 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.197 0.803 37 H 0.178 0.822 38 H 0.068 0.932 39 H 0.116 0.884 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.102 0.898 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.333 -2.974 15.843 19.148 hybrid contribution 0.781 -0.427 0.154 0.903 sum -9.552 -3.401 15.997 18.940 Atomic orbital electron populations 1.22781 0.79942 1.03059 1.00448 1.87775 1.20588 1.26814 1.95620 1.22642 0.92241 0.85480 1.02297 1.21646 0.92975 0.78789 1.06165 1.45393 1.31357 1.11537 1.19256 1.22809 0.98504 0.96506 0.98398 1.21734 1.04660 0.96025 0.98441 1.21944 1.01342 0.94093 0.98922 1.16477 0.79164 0.84905 0.79237 1.90731 1.43075 1.39784 1.68939 1.48213 1.42283 1.15424 1.25707 1.23517 0.92252 0.92763 0.96667 1.21378 0.92865 0.91079 0.89305 0.90984 1.42329 1.15430 1.19297 1.58013 1.19265 1.00217 0.93592 1.24138 0.91023 1.24743 0.96393 0.98408 1.01115 1.69674 1.05793 1.36908 1.45264 0.86161 0.77200 0.84004 0.79063 1.20514 1.21842 1.21974 1.23091 0.98446 0.98486 0.97802 1.21507 0.99670 0.84889 0.90404 0.90679 1.22132 1.01111 0.97655 1.00803 1.73755 1.22645 0.97434 1.14222 0.93960 0.93431 0.89228 0.92692 0.90958 0.87688 0.87211 0.80292 0.82162 0.93239 0.88424 0.78051 0.93519 0.89795 0.90863 0.92933 0.91544 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.00 10.70 -35.23 -0.38 -4.38 16 3 C 0.05 0.51 6.04 37.16 0.22 0.74 16 4 C 0.13 1.24 6.77 -4.04 -0.03 1.21 16 5 N -0.29 -3.74 3.41 -61.33 -0.21 -3.95 16 6 C -0.02 -0.24 11.40 -17.17 -0.20 -0.43 16 7 C -0.18 -2.64 10.81 -39.36 -0.43 -3.07 16 8 C 0.00 -0.04 6.97 -82.77 -0.58 -0.62 16 9 C 0.62 12.27 7.65 -12.39 -0.09 12.18 16 10 O -0.55 -11.86 15.98 5.30 0.08 -11.78 16 11 N -0.58 -11.04 3.06 -164.16 -0.50 -11.54 16 12 C 0.07 1.36 5.84 -2.53 -0.01 1.35 16 13 C 0.17 3.21 3.72 -65.78 -0.24 2.96 16 14 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 15 N -0.71 -17.54 5.23 -51.35 -0.27 -17.81 16 16 C -0.24 -6.55 9.96 -15.06 -0.15 -6.70 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 20 Si 0.90 22.32 29.55 -169.99 -5.02 17.29 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 C -0.14 -2.25 6.08 -24.90 -0.15 -2.40 16 25 C 0.14 2.39 3.45 -66.95 -0.23 2.16 16 26 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 27 C -0.16 -2.34 9.10 37.16 0.34 -2.00 16 28 N -0.25 -4.07 8.78 33.42 0.29 -3.78 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.11 0.74 8.04 -51.93 -0.42 0.32 16 36 H 0.18 1.28 8.06 -52.48 -0.42 0.85 16 37 H 0.16 2.13 8.06 -52.49 -0.42 1.70 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.10 2.04 6.21 -51.93 -0.32 1.72 16 40 H 0.39 10.40 7.86 -40.82 -0.32 10.08 16 41 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 43 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.09 6.91 -51.93 -0.36 0.73 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -34.28 382.10 -7.34 -41.62 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -7.29 Total: 9.68 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -0.53 Total: 6.37 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: 0.04 Total: -64.56 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.29 Total: -16.16 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.28 -7.34 -41.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989151266.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.637 kcal (2) G-P(sol) polarization free energy of solvation -34.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds