Wall clock time and date at job start Tue Mar 31 2020 14:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99933 * 2 1 4 4 C 1.53002 * 109.46974 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47208 * 180.02562 * 4 3 2 6 6 C 1.35023 * 124.88700 * 124.99907 * 5 4 3 7 7 C 1.35367 * 107.22857 * 180.02562 * 6 5 4 8 8 C 1.41500 * 105.50138 * 359.97438 * 7 6 5 9 9 C 1.47706 * 126.51601 * 180.02562 * 8 7 6 10 10 O 1.21575 * 120.00117 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00325 * 179.97438 * 9 8 7 12 12 C 1.47422 * 125.64361 * 359.94729 * 11 9 8 13 13 C 1.54906 * 104.83284 * 204.17309 * 12 11 9 14 14 H 1.09000 * 111.03945 * 204.89940 * 13 12 11 15 15 N 1.46504 * 111.00538 * 81.06220 * 13 12 11 16 16 C 1.36943 * 119.99781 * 92.80655 * 15 13 12 17 17 H 1.08002 * 119.99788 * 359.97438 * 16 15 13 18 18 C 1.38811 * 119.99622 * 180.27904 * 16 15 13 19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15 21 21 H 1.48504 * 109.47306 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47021 * 119.99661 * 20 18 16 23 23 H 1.48501 * 109.47039 * 240.00078 * 20 18 16 24 24 C 1.55153 * 101.58297 * 322.99022 * 13 12 11 25 25 C 1.47023 * 125.65309 * 179.97438 * 11 9 8 26 26 H 1.08997 * 109.88266 * 59.47387 * 25 11 9 27 27 C 1.53003 * 109.87964 * 298.31322 * 25 11 9 28 28 N 1.28473 * 124.87811 * 305.33320 * 5 4 3 29 29 H 1.08995 * 109.47030 * 300.00606 * 1 2 3 30 30 H 1.09003 * 109.46542 * 60.00027 * 1 2 3 31 31 H 1.08995 * 109.47008 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47114 * 59.99882 * 3 2 1 33 33 H 1.08996 * 109.47062 * 299.99696 * 3 2 1 34 34 H 1.08995 * 109.47490 * 59.99643 * 4 3 2 35 35 H 1.09006 * 109.47130 * 299.99765 * 4 3 2 36 36 H 1.08003 * 126.38588 * 359.97438 * 6 5 4 37 37 H 1.08000 * 127.24587 * 179.97438 * 7 6 5 38 38 H 1.09006 * 110.36998 * 85.33360 * 12 11 9 39 39 H 1.09005 * 110.37180 * 323.01170 * 12 11 9 40 40 H 0.97000 * 120.00410 * 272.80980 * 15 13 12 41 41 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 42 42 H 1.09003 * 110.72723 * 153.86049 * 24 13 12 43 43 H 1.09000 * 110.72556 * 277.13946 * 24 13 12 44 44 H 1.09002 * 109.46729 * 302.19093 * 27 25 11 45 45 H 1.08997 * 109.47153 * 62.19314 * 27 25 11 46 46 H 1.08998 * 109.46547 * 182.19329 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5230 0.0013 6 6 5.0255 2.9699 0.9091 7 6 5.3347 4.2443 0.5735 8 6 4.5729 4.5258 -0.5852 9 6 4.5588 5.7947 -1.3410 10 8 5.2505 6.7263 -0.9779 11 7 3.7791 5.9200 -2.4332 12 6 2.8959 4.8753 -2.9827 13 6 2.7322 5.2412 -4.4790 14 1 1.8025 4.8383 -4.8809 15 7 3.8822 4.7806 -5.2612 16 6 3.8502 3.5533 -5.8680 17 1 2.9774 2.9249 -5.7695 18 6 4.9421 3.1146 -6.6042 19 7 6.0060 3.8802 -6.7237 20 14 4.9016 1.4373 -7.4255 21 1 3.6019 0.7778 -7.1405 22 1 5.0632 1.6005 -8.8926 23 1 6.0076 0.5999 -6.8957 24 6 2.6862 6.7908 -4.4176 25 6 3.6688 7.1209 -3.2742 26 1 4.6451 7.3756 -3.6866 27 6 3.1299 8.2887 -2.4455 28 7 3.8738 3.4423 -0.8584 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8575 0.6435 -0.8890 35 1 3.8568 0.6439 0.8909 36 1 5.4197 2.4144 1.7472 37 1 6.0189 4.9067 1.0829 38 1 1.9290 4.8928 -2.4799 39 1 3.3597 3.8941 -2.8807 40 1 4.6662 5.3449 -5.3492 41 1 6.7688 3.5737 -7.2384 42 1 3.0282 7.2244 -5.3574 43 1 1.6818 7.1376 -4.1746 44 1 2.1630 8.0177 -2.0216 45 1 3.8288 8.5160 -1.6406 46 1 3.0141 9.1644 -3.0842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989151266.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:00 Heat of formation + Delta-G solvation = 1.908046 kcal Electronic energy + Delta-G solvation = -28208.126295 eV Core-core repulsion = 24327.700103 eV Total energy + Delta-G solvation = -3880.426192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.65114 -41.00401 -39.01335 -38.67208 -35.80223 -34.99900 -33.23238 -32.88041 -31.55419 -30.36254 -30.10012 -27.37980 -26.73876 -25.84200 -25.46609 -23.73988 -22.59099 -21.95611 -21.36095 -20.00096 -19.27806 -18.46872 -17.89579 -17.68542 -17.22312 -16.98083 -16.74725 -16.39508 -16.03839 -15.70825 -15.42280 -15.23814 -14.90295 -14.77080 -14.47084 -14.23259 -14.19563 -13.94590 -13.50896 -13.24481 -13.14884 -12.99093 -12.91141 -12.71484 -12.62561 -12.36025 -12.29670 -12.21153 -12.09572 -11.66843 -11.59073 -11.48769 -11.16659 -10.95384 -10.76723 -10.26307 -10.08307 -9.61431 -8.97537 -7.93658 -5.22343 0.55498 1.19562 1.34385 1.45638 1.46176 1.56073 2.06456 2.40473 2.55363 2.80059 3.35802 3.38735 3.60559 3.82159 3.83634 3.90940 3.95287 3.98266 4.13044 4.14386 4.20934 4.38352 4.45706 4.49652 4.50984 4.61934 4.67017 4.70749 4.74220 4.76081 4.77286 4.83718 4.84409 5.01076 5.12479 5.18596 5.25729 5.31524 5.36203 5.53885 5.60054 5.87099 6.03247 6.27249 6.54540 6.84801 7.19059 7.33404 8.08306 8.31207 9.30216 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.007524 B = 0.005296 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3720.573758 B = 5285.463675 C = 7283.334880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.057 3.943 4 C 0.120 3.880 5 N -0.281 5.281 6 C 0.009 3.991 7 C -0.204 4.204 8 C -0.041 4.041 9 C 0.603 3.397 10 O -0.579 6.579 11 N -0.589 5.589 12 C 0.088 3.912 13 C 0.155 3.845 14 H 0.087 0.913 15 N -0.724 5.724 16 C -0.231 4.231 17 H 0.082 0.918 18 C -0.077 4.077 19 N -0.972 5.972 20 Si 0.968 3.032 21 H -0.261 1.261 22 H -0.294 1.294 23 H -0.301 1.301 24 C -0.122 4.122 25 C 0.131 3.869 26 H 0.044 0.956 27 C -0.146 4.146 28 N -0.267 5.267 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.233 0.767 37 H 0.166 0.834 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.369 0.631 41 H 0.248 0.752 42 H 0.079 0.921 43 H 0.113 0.887 44 H 0.067 0.933 45 H 0.044 0.956 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.078 -4.023 18.103 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.020 4.020 4 C 0.001 3.999 5 N -0.071 5.071 6 C -0.134 4.134 7 C -0.232 4.232 8 C -0.200 4.200 9 C 0.392 3.608 10 O -0.459 6.459 11 N -0.320 5.320 12 C -0.037 4.037 13 C 0.045 3.955 14 H 0.105 0.895 15 N -0.362 5.362 16 C -0.363 4.363 17 H 0.100 0.900 18 C -0.269 4.269 19 N -0.623 5.623 20 Si 0.798 3.202 21 H -0.185 1.185 22 H -0.222 1.222 23 H -0.229 1.229 24 C -0.161 4.161 25 C 0.028 3.972 26 H 0.062 0.938 27 C -0.204 4.204 28 N -0.104 5.104 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.123 0.877 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.169 0.831 36 H 0.249 0.751 37 H 0.184 0.816 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.201 0.799 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.131 0.869 44 H 0.086 0.914 45 H 0.063 0.937 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.511 -4.454 17.515 21.980 hybrid contribution 1.351 -0.015 -0.274 1.379 sum -11.160 -4.469 17.241 21.018 Atomic orbital electron populations 1.22974 0.78676 1.04291 1.00946 1.87750 1.22029 1.26744 1.95678 1.22516 0.92319 0.85460 1.01726 1.21948 0.92936 0.77292 1.07753 1.45744 1.31046 1.11783 1.18525 1.23511 0.96231 0.95362 0.98249 1.21987 1.05298 0.97806 0.98070 1.21902 1.03651 0.93942 1.00480 1.16948 0.78754 0.85606 0.79520 1.90687 1.44220 1.41036 1.69917 1.48346 1.42161 1.15923 1.25552 1.23291 0.93013 0.91468 0.95953 1.21684 0.91414 0.93392 0.89017 0.89481 1.42517 1.16430 1.18538 1.58748 1.19685 0.99940 0.94248 1.22394 0.89975 1.25531 0.96452 1.01983 1.02918 1.69845 1.06573 1.38843 1.47044 0.85144 0.77532 0.79980 0.77575 1.18461 1.22151 1.22857 1.23017 1.00122 0.95802 0.97117 1.21629 0.98772 0.85611 0.91156 0.93793 1.22019 1.00920 0.97333 1.00110 1.73671 1.23297 0.97838 1.15587 0.92629 0.93780 0.87709 0.91633 0.93193 0.88649 0.83073 0.75053 0.81647 0.90561 0.90944 0.79930 0.94323 0.90231 0.86916 0.91404 0.93682 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -7.46 10.70 -148.98 -1.59 -9.06 16 3 C 0.06 1.05 6.04 71.98 0.43 1.48 16 4 C 0.12 2.08 6.77 86.38 0.58 2.67 16 5 N -0.28 -6.81 3.41 -347.94 -1.19 -8.00 16 6 C 0.01 0.18 11.40 83.54 0.95 1.13 16 7 C -0.20 -5.83 10.81 22.41 0.24 -5.59 16 8 C -0.04 -1.48 6.97 42.46 0.30 -1.18 16 9 C 0.60 24.92 7.65 86.75 0.66 25.58 16 10 O -0.58 -26.23 15.98 -3.95 -0.06 -26.30 16 11 N -0.59 -22.58 3.06 -791.56 -2.43 -25.01 16 12 C 0.09 3.22 5.84 86.85 0.51 3.72 16 13 C 0.16 5.86 3.72 46.38 0.17 6.03 16 14 H 0.09 3.05 8.09 -2.39 -0.02 3.03 16 15 N -0.72 -36.21 5.23 -316.37 -1.66 -37.86 16 16 C -0.23 -12.59 9.96 84.03 0.84 -11.75 16 17 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 18 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 19 N -0.97 -60.94 13.06 21.65 0.28 -60.66 16 20 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 21 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 24 C -0.12 -3.77 6.08 31.78 0.19 -3.57 16 25 C 0.13 4.56 3.45 45.34 0.16 4.72 16 26 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 27 C -0.15 -4.14 9.10 71.98 0.65 -3.49 16 28 N -0.27 -8.79 8.78 -48.18 -0.42 -9.22 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 1.12 8.08 -2.39 -0.02 1.11 16 34 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.15 1.37 8.04 -2.38 -0.02 1.36 16 36 H 0.23 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.17 4.38 8.06 -2.91 -0.02 4.35 16 38 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.07 3.06 6.21 -2.38 -0.01 3.05 16 40 H 0.37 20.66 7.86 -92.71 -0.73 19.93 16 41 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.11 2.63 7.85 -2.39 -0.02 2.61 16 44 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.04 1.48 6.91 -2.39 -0.02 1.46 16 46 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -78.16 382.10 2.62 -75.54 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: 0.25 Total: 34.75 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 7.41 Total: 17.38 kcal Atomic # 7 Polarization: -135.34 SS G_CDS: -5.41 Total: -140.75 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -1.66 Total: -35.35 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -78.16 2.62 -75.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989151266.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.452 kcal (2) G-P(sol) polarization free energy of solvation -78.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds