Wall clock time and date at job start Tue Mar 31 2020 14:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42905 * 114.00252 * 2 1 4 4 C 1.52994 * 109.47521 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47013 * 179.97438 * 4 3 2 6 6 C 1.34264 * 125.75103 * 125.00513 * 5 4 3 7 7 C 1.38044 * 107.41281 * 179.76864 * 6 5 4 8 8 C 1.47423 * 126.41074 * 180.22282 * 7 6 5 9 9 O 1.21603 * 120.00259 * 6.90160 * 8 7 6 10 10 N 1.34777 * 120.00052 * 186.90287 * 8 7 6 11 11 C 1.47421 * 125.64620 * 5.58673 * 10 8 7 12 12 C 1.55134 * 104.72518 * 155.81716 * 11 10 8 13 13 H 1.08991 * 110.90906 * 155.27333 * 12 11 10 14 14 N 1.46504 * 111.22203 * 279.17363 * 12 11 10 15 15 C 1.36933 * 120.00298 * 267.20118 * 14 12 11 16 16 H 1.08001 * 119.99569 * 0.02562 * 15 14 12 17 17 C 1.38808 * 120.00270 * 180.02562 * 15 14 12 18 18 N 1.31613 * 120.00193 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99761 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47124 * 90.00003 * 19 17 15 21 21 H 1.48496 * 109.47281 * 209.99610 * 19 17 15 22 22 H 1.48497 * 109.47491 * 330.00082 * 19 17 15 23 23 C 1.55158 * 101.48095 * 37.29210 * 12 11 10 24 24 C 1.47026 * 125.65112 * 185.89193 * 10 8 7 25 25 H 1.09005 * 109.87630 * 300.44118 * 24 10 8 26 26 C 1.52995 * 109.88215 * 61.60237 * 24 10 8 27 27 C 1.41293 * 107.17226 * 0.22361 * 7 6 5 28 28 N 1.30444 * 108.02162 * 0.02562 * 27 7 6 29 29 H 1.08999 * 109.47267 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47436 * 299.99765 * 1 2 3 31 31 H 1.08998 * 109.47315 * 60.00177 * 1 2 3 32 32 H 1.08999 * 109.47029 * 59.99364 * 3 2 1 33 33 H 1.09008 * 109.46364 * 300.00057 * 3 2 1 34 34 H 1.09005 * 109.46797 * 59.99768 * 4 3 2 35 35 H 1.08999 * 109.46986 * 299.99882 * 4 3 2 36 36 H 1.07996 * 126.28744 * 0.02562 * 6 5 4 37 37 H 1.09003 * 110.36935 * 274.74627 * 11 10 8 38 38 H 1.08998 * 110.36947 * 37.06684 * 11 10 8 39 39 H 0.97000 * 119.99360 * 87.20663 * 14 12 11 40 40 H 0.96997 * 120.00208 * 179.97438 * 18 17 15 41 41 H 1.09003 * 110.71308 * 205.96823 * 23 12 11 42 42 H 1.09000 * 110.87184 * 82.77119 * 23 12 11 43 43 H 1.09000 * 109.46905 * 58.54952 * 26 24 10 44 44 H 1.08994 * 109.47313 * 178.54209 * 26 24 10 45 45 H 1.08996 * 109.47329 * 298.55393 * 26 24 10 46 46 H 1.08002 * 125.98564 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0209 2.9861 0.8926 7 6 5.3303 4.2825 0.5331 8 6 6.2705 5.1821 1.2261 9 8 6.9533 4.7610 2.1400 10 7 6.3733 6.4712 0.8467 11 6 5.5297 7.1404 -0.1602 12 6 5.5967 8.6462 0.2071 13 1 5.3951 9.2685 -0.6647 14 7 4.6771 8.9666 1.3015 15 6 3.4085 9.4016 1.0248 16 1 3.0858 9.5080 -0.0004 17 6 2.5373 9.7057 2.0618 18 7 1.3179 10.1232 1.7958 19 14 3.0958 9.5222 3.8349 20 1 3.6986 10.7977 4.2985 21 1 1.9285 9.1871 4.6894 22 1 4.1043 8.4361 3.9265 23 6 7.0734 8.7877 0.6619 24 6 7.3495 7.4415 1.3639 25 1 7.2261 7.5529 2.4412 26 6 8.7699 6.9704 1.0458 27 6 4.5772 4.5858 -0.6233 28 7 3.8664 3.5356 -0.9289 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8463 -0.8901 34 1 3.8573 0.6436 -0.8891 35 1 3.8566 0.6440 0.8909 36 1 5.4238 2.4426 1.7343 37 1 5.9285 6.9735 -1.1608 38 1 4.5031 6.7799 -0.0951 39 1 4.9669 8.8707 2.2222 40 1 0.7090 10.3354 2.5204 41 1 7.1838 9.6169 1.3607 42 1 7.7332 8.9177 -0.1960 43 1 8.8817 6.8557 -0.0324 44 1 9.4868 7.7066 1.4090 45 1 8.9531 6.0132 1.5339 46 1 4.5877 5.5231 -1.1596 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989733277.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:13 Heat of formation + Delta-G solvation = 27.656255 kcal Electronic energy + Delta-G solvation = -27667.145729 eV Core-core repulsion = 23787.836063 eV Total energy + Delta-G solvation = -3879.309666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.43831 -39.60979 -38.29182 -37.24045 -34.18961 -34.06678 -31.75788 -31.47795 -30.43457 -29.14038 -28.93585 -26.62838 -25.70345 -24.00477 -23.65654 -22.94541 -21.02174 -20.96348 -19.90684 -18.97710 -17.72391 -17.46083 -16.65578 -16.61137 -16.17591 -15.72559 -15.65100 -14.88598 -14.88123 -14.39261 -14.19223 -13.95289 -13.82311 -13.58433 -13.33077 -12.95552 -12.72535 -12.65931 -12.33858 -12.29493 -12.04920 -11.91494 -11.89513 -11.70471 -11.38497 -11.05178 -10.96607 -10.79308 -10.62430 -10.35297 -10.09724 -10.07786 -9.64914 -9.62425 -9.55105 -9.05358 -8.72382 -8.23120 -7.34189 -5.83866 -3.20407 1.52598 2.08481 2.27496 3.34050 3.35383 3.40840 3.42274 3.43731 3.70503 4.28056 4.54110 4.54629 4.69704 4.72800 4.85460 4.93723 5.00293 5.01363 5.04334 5.15325 5.20326 5.29061 5.30448 5.32902 5.33730 5.50744 5.52523 5.60177 5.64878 5.73533 5.80349 5.94263 6.02284 6.11640 6.31533 6.32989 6.39477 6.50937 6.57265 6.61507 6.75554 6.79846 7.51803 7.90733 7.93250 8.35105 8.56233 9.12687 9.85610 10.04157 11.33786 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.003973 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.799931 B = 7045.494926 C = 8895.788830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.049 3.951 4 C 0.137 3.863 5 N -0.365 5.365 6 C 0.126 3.874 7 C -0.280 4.280 8 C 0.610 3.390 9 O -0.562 6.562 10 N -0.598 5.598 11 C 0.060 3.940 12 C 0.174 3.826 13 H 0.084 0.916 14 N -0.735 5.735 15 C -0.250 4.250 16 H 0.093 0.907 17 C 0.011 3.989 18 N -0.930 5.930 19 Si 0.879 3.121 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.276 1.276 23 C -0.142 4.142 24 C 0.138 3.862 25 H 0.071 0.929 26 C -0.158 4.158 27 C 0.081 3.919 28 N -0.299 5.299 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.187 0.813 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.363 0.637 40 H 0.260 0.740 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.265 -16.210 -5.537 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.028 4.028 4 C 0.015 3.985 5 N -0.146 5.146 6 C -0.025 4.025 7 C -0.294 4.294 8 C 0.400 3.600 9 O -0.442 6.442 10 N -0.330 5.330 11 C -0.066 4.066 12 C 0.063 3.937 13 H 0.102 0.898 14 N -0.376 5.376 15 C -0.380 4.380 16 H 0.111 0.889 17 C -0.185 4.185 18 N -0.577 5.577 19 Si 0.709 3.291 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.202 1.202 23 C -0.181 4.181 24 C 0.035 3.965 25 H 0.089 0.911 26 C -0.217 4.217 27 C -0.106 4.106 28 N -0.118 5.118 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.204 0.796 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.196 0.804 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.545 -17.226 -5.955 19.366 hybrid contribution 0.459 0.422 1.951 2.048 sum 7.004 -16.803 -4.004 18.640 Atomic orbital electron populations 1.22781 0.79892 1.02986 1.00608 1.87750 1.20643 1.26997 1.95660 1.22678 0.92417 0.85284 1.02467 1.21438 0.92798 0.78804 1.05419 1.48317 1.33040 1.11991 1.21205 1.22900 0.91119 0.94337 0.94107 1.20225 1.10114 0.96009 1.03099 1.16790 0.81257 0.80087 0.81827 1.90715 1.47209 1.75847 1.30457 1.48155 1.34584 1.08760 1.41461 1.23722 0.95379 0.97236 0.90305 1.21338 0.88092 0.91565 0.92754 0.89826 1.42693 1.12363 1.79684 1.02864 1.19063 0.87094 1.36817 0.94982 0.88884 1.24636 0.95709 1.00887 0.97285 1.69690 1.05778 1.50888 1.31310 0.86633 0.77816 0.78027 0.86621 1.20924 1.21742 1.20196 1.23123 0.98227 0.95799 1.00954 1.21468 0.88195 0.88222 0.98620 0.91126 1.22117 0.95797 1.02167 1.01580 1.24808 0.92653 0.97830 0.95331 1.77188 1.24194 0.96899 1.13550 0.89250 0.93697 0.93605 0.92381 0.91271 0.88473 0.87506 0.79622 0.92022 0.89269 0.80380 0.92984 0.89878 0.90260 0.92651 0.91984 0.91745 0.78142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -3.80 10.70 -35.23 -0.38 -4.18 16 3 C 0.05 0.48 6.11 37.15 0.23 0.71 16 4 C 0.14 1.23 6.86 -4.04 -0.03 1.20 16 5 N -0.37 -4.51 3.65 -60.81 -0.22 -4.73 16 6 C 0.13 1.65 11.26 -16.56 -0.19 1.46 16 7 C -0.28 -4.36 6.05 -105.07 -0.64 -4.99 16 8 C 0.61 10.77 7.58 -12.52 -0.09 10.68 16 9 O -0.56 -11.15 16.17 5.27 0.09 -11.06 16 10 N -0.60 -9.85 3.06 -164.14 -0.50 -10.35 16 11 C 0.06 0.92 4.81 -2.41 -0.01 0.91 16 12 C 0.17 2.96 3.72 -65.66 -0.24 2.72 16 13 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 14 N -0.74 -16.29 5.05 -51.24 -0.26 -16.55 16 15 C -0.25 -6.65 10.44 -15.06 -0.16 -6.81 16 16 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 17 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 18 N -0.93 -28.47 13.97 55.49 0.78 -27.69 16 19 Si 0.88 22.04 27.74 -169.99 -4.71 17.33 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 22 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 23 C -0.14 -1.98 6.07 -24.90 -0.15 -2.14 16 24 C 0.14 2.11 3.42 -66.96 -0.23 1.88 16 25 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 26 C -0.16 -2.07 9.10 37.16 0.34 -1.73 16 27 C 0.08 1.20 10.28 -16.98 -0.17 1.02 16 28 N -0.30 -4.35 12.33 30.86 0.38 -3.97 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.11 0.72 8.06 -51.93 -0.42 0.30 16 36 H 0.19 1.96 8.06 -52.49 -0.42 1.53 16 37 H 0.06 0.77 7.73 -51.93 -0.40 0.37 16 38 H 0.09 1.54 5.92 -51.93 -0.31 1.23 16 39 H 0.36 8.29 5.73 -40.82 -0.23 8.06 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.08 0.90 7.85 -51.93 -0.41 0.50 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.96 7.08 -51.93 -0.37 0.59 16 46 H 0.20 2.67 4.86 -52.49 -0.26 2.42 16 LS Contribution 376.78 15.07 5.68 5.68 Total: -1.00 -34.30 376.78 -6.54 -40.84 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.05 Total: 8.18 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -0.33 Total: 6.51 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: 0.17 Total: -63.29 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.29 Total: -15.24 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.30 -6.54 -40.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989733277.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.498 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds