Wall clock time and date at job start Tue Mar 31 2020 14:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42905 * 114.00252 * 2 1 4 4 C 1.52994 * 109.47521 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47013 * 179.97438 * 4 3 2 6 6 C 1.34264 * 125.75103 * 125.00513 * 5 4 3 7 7 C 1.38044 * 107.41281 * 179.76864 * 6 5 4 8 8 C 1.47423 * 126.41074 * 180.22282 * 7 6 5 9 9 O 1.21603 * 120.00259 * 6.90160 * 8 7 6 10 10 N 1.34777 * 120.00052 * 186.90287 * 8 7 6 11 11 C 1.47421 * 125.64620 * 5.58673 * 10 8 7 12 12 C 1.55134 * 104.72518 * 155.81716 * 11 10 8 13 13 H 1.08991 * 110.90906 * 155.27333 * 12 11 10 14 14 N 1.46504 * 111.22203 * 279.17363 * 12 11 10 15 15 C 1.36933 * 120.00298 * 267.20118 * 14 12 11 16 16 H 1.08001 * 119.99569 * 0.02562 * 15 14 12 17 17 C 1.38808 * 120.00270 * 180.02562 * 15 14 12 18 18 N 1.31613 * 120.00193 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99761 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47124 * 90.00003 * 19 17 15 21 21 H 1.48496 * 109.47281 * 209.99610 * 19 17 15 22 22 H 1.48497 * 109.47491 * 330.00082 * 19 17 15 23 23 C 1.55158 * 101.48095 * 37.29210 * 12 11 10 24 24 C 1.47026 * 125.65112 * 185.89193 * 10 8 7 25 25 H 1.09005 * 109.87630 * 300.44118 * 24 10 8 26 26 C 1.52995 * 109.88215 * 61.60237 * 24 10 8 27 27 C 1.41293 * 107.17226 * 0.22361 * 7 6 5 28 28 N 1.30444 * 108.02162 * 0.02562 * 27 7 6 29 29 H 1.08999 * 109.47267 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47436 * 299.99765 * 1 2 3 31 31 H 1.08998 * 109.47315 * 60.00177 * 1 2 3 32 32 H 1.08999 * 109.47029 * 59.99364 * 3 2 1 33 33 H 1.09008 * 109.46364 * 300.00057 * 3 2 1 34 34 H 1.09005 * 109.46797 * 59.99768 * 4 3 2 35 35 H 1.08999 * 109.46986 * 299.99882 * 4 3 2 36 36 H 1.07996 * 126.28744 * 0.02562 * 6 5 4 37 37 H 1.09003 * 110.36935 * 274.74627 * 11 10 8 38 38 H 1.08998 * 110.36947 * 37.06684 * 11 10 8 39 39 H 0.97000 * 119.99360 * 87.20663 * 14 12 11 40 40 H 0.96997 * 120.00208 * 179.97438 * 18 17 15 41 41 H 1.09003 * 110.71308 * 205.96823 * 23 12 11 42 42 H 1.09000 * 110.87184 * 82.77119 * 23 12 11 43 43 H 1.09000 * 109.46905 * 58.54952 * 26 24 10 44 44 H 1.08994 * 109.47313 * 178.54209 * 26 24 10 45 45 H 1.08996 * 109.47329 * 298.55393 * 26 24 10 46 46 H 1.08002 * 125.98564 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0209 2.9861 0.8926 7 6 5.3303 4.2825 0.5331 8 6 6.2705 5.1821 1.2261 9 8 6.9533 4.7610 2.1400 10 7 6.3733 6.4712 0.8467 11 6 5.5297 7.1404 -0.1602 12 6 5.5967 8.6462 0.2071 13 1 5.3951 9.2685 -0.6647 14 7 4.6771 8.9666 1.3015 15 6 3.4085 9.4016 1.0248 16 1 3.0858 9.5080 -0.0004 17 6 2.5373 9.7057 2.0618 18 7 1.3179 10.1232 1.7958 19 14 3.0958 9.5222 3.8349 20 1 3.6986 10.7977 4.2985 21 1 1.9285 9.1871 4.6894 22 1 4.1043 8.4361 3.9265 23 6 7.0734 8.7877 0.6619 24 6 7.3495 7.4415 1.3639 25 1 7.2261 7.5529 2.4412 26 6 8.7699 6.9704 1.0458 27 6 4.5772 4.5858 -0.6233 28 7 3.8664 3.5356 -0.9289 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8463 -0.8901 34 1 3.8573 0.6436 -0.8891 35 1 3.8566 0.6440 0.8909 36 1 5.4238 2.4426 1.7343 37 1 5.9285 6.9735 -1.1608 38 1 4.5031 6.7799 -0.0951 39 1 4.9669 8.8707 2.2222 40 1 0.7090 10.3354 2.5204 41 1 7.1838 9.6169 1.3607 42 1 7.7332 8.9177 -0.1960 43 1 8.8817 6.8557 -0.0324 44 1 9.4868 7.7066 1.4090 45 1 8.9531 6.0132 1.5339 46 1 4.5877 5.5231 -1.1596 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989733277.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:12 Heat of formation + Delta-G solvation = 3.117686 kcal Electronic energy + Delta-G solvation = -27668.209801 eV Core-core repulsion = 23787.836063 eV Total energy + Delta-G solvation = -3880.373739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.51074 -40.86656 -39.03515 -38.61393 -35.87267 -35.08731 -33.41313 -32.86865 -31.46554 -30.55825 -30.04839 -27.31656 -26.86495 -25.49177 -24.86851 -24.20744 -22.25920 -22.01828 -21.19592 -20.17553 -19.69934 -18.46882 -17.68757 -17.45705 -17.41838 -16.76343 -16.51370 -16.37516 -16.07984 -15.81431 -15.52067 -15.08770 -15.07703 -14.78060 -14.52713 -14.35587 -14.14360 -13.82891 -13.60217 -13.42511 -13.13621 -13.07037 -12.98601 -12.76030 -12.69582 -12.39596 -12.33868 -12.03728 -11.97593 -11.96781 -11.75875 -11.47025 -11.05654 -10.85384 -10.80447 -10.65169 -9.88877 -9.59161 -9.18267 -8.01777 -5.33040 0.46053 1.11022 1.18703 1.35079 1.37594 1.42481 2.12102 2.45002 2.46666 2.68492 3.28001 3.41255 3.59170 3.66849 3.75530 3.82355 3.86923 3.91881 4.06724 4.14808 4.16326 4.27540 4.39768 4.42325 4.45779 4.47691 4.56959 4.59357 4.66841 4.70906 4.75366 4.79114 4.82474 4.97963 5.12945 5.20438 5.22461 5.32866 5.38951 5.59461 5.74611 5.81566 5.97169 6.23386 6.44662 6.64559 7.08939 7.25832 7.86441 8.02397 9.19400 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.003973 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.799931 B = 7045.494926 C = 8895.788830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.054 3.946 4 C 0.132 3.868 5 N -0.357 5.357 6 C 0.137 3.863 7 C -0.311 4.311 8 C 0.604 3.396 9 O -0.593 6.593 10 N -0.601 5.601 11 C 0.069 3.931 12 C 0.160 3.840 13 H 0.094 0.906 14 N -0.742 5.742 15 C -0.219 4.219 16 H 0.073 0.927 17 C -0.056 4.056 18 N -0.980 5.980 19 Si 0.939 3.061 20 H -0.275 1.275 21 H -0.302 1.302 22 H -0.269 1.269 23 C -0.125 4.125 24 C 0.131 3.869 25 H 0.046 0.954 26 C -0.147 4.147 27 C 0.078 3.922 28 N -0.319 5.319 29 H 0.109 0.891 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.111 0.889 35 H 0.136 0.864 36 H 0.212 0.788 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.360 0.640 40 H 0.255 0.745 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.041 0.959 46 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.156 -17.389 -6.045 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.023 4.023 4 C 0.012 3.988 5 N -0.137 5.137 6 C -0.015 4.015 7 C -0.325 4.325 8 C 0.395 3.605 9 O -0.476 6.476 10 N -0.332 5.332 11 C -0.056 4.056 12 C 0.050 3.950 13 H 0.112 0.888 14 N -0.383 5.383 15 C -0.350 4.350 16 H 0.091 0.909 17 C -0.248 4.248 18 N -0.631 5.631 19 Si 0.769 3.231 20 H -0.202 1.202 21 H -0.229 1.229 22 H -0.194 1.194 23 C -0.164 4.164 24 C 0.028 3.972 25 H 0.064 0.936 26 C -0.205 4.205 27 C -0.109 4.109 28 N -0.138 5.138 29 H 0.127 0.873 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.129 0.871 35 H 0.154 0.846 36 H 0.228 0.772 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.193 0.807 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.135 0.865 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.060 0.940 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 8.484 -18.423 -6.510 21.302 hybrid contribution -0.127 0.693 1.999 2.119 sum 8.357 -17.730 -4.512 20.113 Atomic orbital electron populations 1.22974 0.78802 1.04380 1.00789 1.87732 1.21874 1.26627 1.95656 1.22552 0.93051 0.85355 1.01361 1.21752 0.92107 0.77365 1.07545 1.48551 1.32398 1.12499 1.20224 1.23290 0.90266 0.93722 0.94185 1.20265 1.11179 0.96997 1.04099 1.17110 0.81218 0.80582 0.81576 1.90684 1.48552 1.76479 1.31865 1.48267 1.34768 1.08721 1.41486 1.23618 0.94654 0.95441 0.91935 1.21684 0.89045 0.92552 0.91689 0.88826 1.42757 1.11598 1.79759 1.04164 1.19103 0.88455 1.33601 0.93813 0.90897 1.25275 0.96021 1.02500 1.00962 1.69838 1.07234 1.53967 1.32030 0.85648 0.76934 0.78282 0.82270 1.20156 1.22916 1.19441 1.23068 0.96195 0.94949 1.02151 1.21609 0.89366 0.88794 0.97441 0.93608 1.22017 0.94605 1.01539 1.02345 1.24917 0.92474 0.98241 0.95244 1.77143 1.24591 0.97476 1.14623 0.87309 0.93570 0.93407 0.93297 0.92632 0.87127 0.84641 0.77158 0.88181 0.91321 0.80742 0.93580 0.89786 0.86519 0.91165 0.89755 0.93957 0.77488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -7.19 10.70 -148.98 -1.59 -8.79 16 3 C 0.05 1.02 6.11 71.98 0.44 1.46 16 4 C 0.13 2.11 6.86 86.38 0.59 2.70 16 5 N -0.36 -8.27 3.65 -346.30 -1.26 -9.53 16 6 C 0.14 3.39 11.26 84.28 0.95 4.34 16 7 C -0.31 -9.40 6.05 -20.15 -0.12 -9.53 16 8 C 0.60 20.89 7.58 86.66 0.66 21.54 16 9 O -0.59 -23.34 16.17 -4.04 -0.07 -23.41 16 10 N -0.60 -18.95 3.06 -791.46 -2.42 -21.38 16 11 C 0.07 1.99 4.81 86.93 0.42 2.41 16 12 C 0.16 5.09 3.72 46.46 0.17 5.26 16 13 H 0.09 2.84 8.09 -2.39 -0.02 2.82 16 14 N -0.74 -32.14 5.05 -316.01 -1.60 -33.73 16 15 C -0.22 -11.67 10.44 84.03 0.88 -10.79 16 16 H 0.07 4.14 8.06 -2.91 -0.02 4.12 16 17 C -0.06 -3.21 5.50 84.86 0.47 -2.75 16 18 N -0.98 -61.53 13.97 21.65 0.30 -61.23 16 19 Si 0.94 46.22 27.74 68.60 1.90 48.12 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 22 H -0.27 -12.70 6.52 99.48 0.65 -12.05 16 23 C -0.13 -3.10 6.07 31.78 0.19 -2.90 16 24 C 0.13 3.74 3.42 45.34 0.16 3.89 16 25 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 26 C -0.15 -3.45 9.10 71.98 0.66 -2.80 16 27 C 0.08 2.24 10.28 85.65 0.88 3.12 16 28 N -0.32 -9.00 12.33 -56.27 -0.69 -9.69 16 29 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.14 1.41 8.06 -2.39 -0.02 1.39 16 36 H 0.21 3.97 8.06 -2.91 -0.02 3.95 16 37 H 0.10 2.18 7.73 -2.39 -0.02 2.16 16 38 H 0.07 2.32 5.92 -2.39 -0.01 2.31 16 39 H 0.36 16.04 5.73 -92.71 -0.53 15.51 16 40 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.12 2.08 7.85 -2.39 -0.02 2.06 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.04 1.19 7.08 -2.39 -0.02 1.17 16 46 H 0.21 5.34 4.86 -2.91 -0.01 5.33 16 Total: -1.00 -75.65 376.78 2.55 -73.10 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.40 Total: 28.97 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 7.58 Total: 17.57 kcal Atomic # 7 Polarization: -129.89 SS G_CDS: -5.68 Total: -135.57 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -1.66 Total: -32.20 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.90 Total: 48.12 kcal Total: -75.65 2.55 -73.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989733277.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.215 kcal (2) G-P(sol) polarization free energy of solvation -75.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds