Wall clock time and date at job start Tue Mar 31 2020 14:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00185 * 2 1 4 4 C 1.53001 * 109.47019 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47442 * 179.97438 * 4 3 2 6 6 C 1.34262 * 125.75154 * 125.30486 * 5 4 3 7 7 C 1.38040 * 107.41330 * 180.11634 * 6 5 4 8 8 C 1.47431 * 126.41408 * 179.87294 * 7 6 5 9 9 O 1.21610 * 119.99937 * 352.82318 * 8 7 6 10 10 N 1.34777 * 120.00092 * 172.81936 * 8 7 6 11 11 C 1.47419 * 125.64733 * 354.10436 * 10 8 7 12 12 C 1.54916 * 104.83084 * 204.14972 * 11 10 8 13 13 H 1.09005 * 111.00266 * 204.91902 * 12 11 10 14 14 N 1.46499 * 111.00217 * 81.06535 * 12 11 10 15 15 C 1.36933 * 119.99839 * 92.80910 * 14 12 11 16 16 H 1.07997 * 120.00493 * 359.97438 * 15 14 12 17 17 C 1.38818 * 119.99905 * 179.97438 * 15 14 12 18 18 N 1.31619 * 119.99802 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99812 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47337 * 89.99898 * 19 17 15 21 21 H 1.48508 * 109.46515 * 209.99744 * 19 17 15 22 22 H 1.48497 * 109.46989 * 329.99256 * 19 17 15 23 23 C 1.55160 * 101.58228 * 322.98941 * 12 11 10 24 24 C 1.47025 * 125.64664 * 174.12893 * 10 8 7 25 25 H 1.08999 * 110.01312 * 59.43193 * 24 10 8 26 26 C 1.52999 * 109.88356 * 298.33776 * 24 10 8 27 27 C 1.41286 * 107.17465 * 359.61337 * 7 6 5 28 28 N 1.30448 * 108.02043 * 0.23924 * 27 7 6 29 29 H 1.08991 * 109.47410 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46484 * 299.99859 * 1 2 3 31 31 H 1.08998 * 109.46662 * 59.99394 * 1 2 3 32 32 H 1.09000 * 109.46835 * 60.00728 * 3 2 1 33 33 H 1.08993 * 109.47392 * 299.99954 * 3 2 1 34 34 H 1.09006 * 109.47116 * 60.00395 * 4 3 2 35 35 H 1.08998 * 109.47354 * 300.00443 * 4 3 2 36 36 H 1.07996 * 126.29398 * 359.96704 * 6 5 4 37 37 H 1.09000 * 110.36865 * 85.31419 * 11 10 8 38 38 H 1.08997 * 110.37059 * 322.98780 * 11 10 8 39 39 H 0.96999 * 119.99713 * 272.79960 * 14 12 11 40 40 H 0.97005 * 119.99522 * 179.97438 * 18 17 15 41 41 H 1.09001 * 110.71985 * 153.86381 * 23 12 11 42 42 H 1.08997 * 110.72293 * 276.96244 * 23 12 11 43 43 H 1.09004 * 109.46822 * 302.19276 * 26 24 10 44 44 H 1.09000 * 109.47269 * 62.19310 * 26 24 10 45 45 H 1.08999 * 109.46872 * 182.19397 * 26 24 10 46 46 H 1.07999 * 125.99281 * 180.24199 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1315 2.5228 -0.0013 6 6 5.0263 2.9835 0.8874 7 6 5.3279 4.2833 0.5341 8 6 6.2646 5.1845 1.2299 9 8 6.7586 4.8481 2.2890 10 7 6.5734 6.3812 0.6922 11 6 6.1479 6.8624 -0.6347 12 6 7.2060 7.9227 -1.0300 13 1 6.7941 8.6398 -1.7402 14 7 8.4110 7.2867 -1.5683 15 6 8.5387 7.0938 -2.9179 16 1 7.7510 7.4101 -3.5856 17 6 9.6808 6.4916 -3.4280 18 7 10.6410 6.1065 -2.6144 19 14 9.8546 6.2279 -5.2691 20 1 10.5080 7.4135 -5.8795 21 1 10.6838 5.0217 -5.5201 22 1 8.5105 6.0386 -5.8711 23 6 7.4964 8.5975 0.3366 24 6 7.3908 7.4226 1.3316 25 1 8.3848 7.0335 1.5525 26 6 6.7177 7.8929 2.6226 27 6 4.5756 4.5865 -0.6228 28 7 3.8690 3.5344 -0.9318 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 1.6887 1.8462 0.8901 33 1 1.6887 1.8463 -0.8899 34 1 3.8568 0.6438 -0.8909 35 1 3.8575 0.6434 0.8890 36 1 5.4333 2.4382 1.7261 37 1 5.1593 7.3174 -0.5742 38 1 6.1458 6.0425 -1.3529 39 1 9.1184 7.0023 -0.9686 40 1 11.4389 5.6854 -2.9708 41 1 8.4988 9.0255 0.3501 42 1 6.7498 9.3607 0.5562 43 1 5.7180 8.2639 2.3967 44 1 6.6467 7.0584 3.3202 45 1 7.3090 8.6915 3.0705 46 1 4.5841 5.5247 -1.1576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989733278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:16 Heat of formation + Delta-G solvation = 24.072843 kcal Electronic energy + Delta-G solvation = -27493.350080 eV Core-core repulsion = 23613.885025 eV Total energy + Delta-G solvation = -3879.465055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.38314 -39.48051 -38.34282 -37.09721 -34.14814 -33.92762 -31.64447 -31.28970 -30.39501 -29.09089 -28.40395 -26.67499 -25.58910 -23.99178 -23.76709 -23.02914 -20.95383 -20.91635 -19.77872 -18.87754 -17.50183 -17.24096 -16.66617 -16.55972 -16.08217 -15.73503 -15.55675 -14.98991 -14.61301 -14.47666 -14.07128 -13.85806 -13.68744 -13.43916 -13.39760 -12.96176 -12.76274 -12.49753 -12.38209 -12.18277 -12.00058 -11.79407 -11.75124 -11.59379 -11.10856 -10.95603 -10.89614 -10.67672 -10.58928 -10.27772 -10.15738 -9.99079 -9.70611 -9.57812 -9.44716 -9.00511 -8.65768 -8.10131 -7.01497 -5.80494 -3.10771 1.59103 2.10406 2.33029 3.39690 3.41502 3.45655 3.46847 3.48755 3.80871 4.29439 4.50533 4.55028 4.74828 4.77939 4.85728 4.92058 4.93253 5.02930 5.17472 5.21388 5.24035 5.29504 5.33474 5.41611 5.54453 5.55035 5.62133 5.71330 5.74171 5.84784 5.92238 6.04609 6.21993 6.26065 6.43664 6.44893 6.47894 6.58309 6.65010 6.74238 6.78526 6.92417 7.55920 7.65699 8.06046 8.36691 8.67840 9.48613 10.04369 10.38684 11.41399 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010788 B = 0.003465 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.876714 B = 8078.711443 C = 9898.047556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.052 3.948 4 C 0.136 3.864 5 N -0.366 5.366 6 C 0.125 3.875 7 C -0.276 4.276 8 C 0.610 3.390 9 O -0.562 6.562 10 N -0.594 5.594 11 C 0.060 3.940 12 C 0.168 3.832 13 H 0.075 0.925 14 N -0.711 5.711 15 C -0.247 4.247 16 H 0.073 0.927 17 C -0.009 4.009 18 N -0.928 5.928 19 Si 0.906 3.094 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.281 1.281 23 C -0.139 4.139 24 C 0.141 3.859 25 H 0.074 0.926 26 C -0.158 4.158 27 C 0.081 3.919 28 N -0.302 5.302 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.187 0.813 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.350 -5.013 8.183 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.026 4.026 4 C 0.014 3.986 5 N -0.146 5.146 6 C -0.025 4.025 7 C -0.291 4.291 8 C 0.400 3.600 9 O -0.442 6.442 10 N -0.325 5.325 11 C -0.066 4.066 12 C 0.056 3.944 13 H 0.093 0.907 14 N -0.350 5.350 15 C -0.378 4.378 16 H 0.091 0.909 17 C -0.205 4.205 18 N -0.575 5.575 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.178 4.178 24 C 0.037 3.963 25 H 0.092 0.908 26 C -0.217 4.217 27 C -0.107 4.107 28 N -0.121 5.121 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.204 0.796 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -18.906 -6.097 7.743 21.321 hybrid contribution 0.783 0.162 -0.354 0.874 sum -18.124 -5.935 7.389 20.452 Atomic orbital electron populations 1.22773 0.80036 1.03041 1.00368 1.87779 1.20508 1.27020 1.95608 1.22654 0.92595 0.85234 1.02098 1.21438 0.92553 0.78981 1.05625 1.48275 1.33133 1.12028 1.21193 1.22901 0.90989 0.94291 0.94319 1.20249 1.09609 0.96186 1.03056 1.16768 0.79962 0.79530 0.83758 1.90715 1.55144 1.74678 1.23692 1.48094 1.51247 1.14886 1.18309 1.23695 0.98384 1.00480 0.84043 1.21351 0.88439 0.92070 0.92579 0.90750 1.42331 1.16964 1.70538 1.05161 1.19228 1.01898 1.33303 0.83360 0.90939 1.24768 0.96855 1.01218 0.97706 1.69673 1.08483 1.45944 1.33381 0.86213 0.77509 0.77319 0.85253 1.21659 1.21829 1.20664 1.23084 1.02857 0.96233 0.95670 1.21439 0.94672 0.87617 0.92526 0.90787 1.22126 1.00351 1.01395 0.97788 1.24787 0.93071 0.98166 0.94646 1.77162 1.24977 0.96836 1.13143 0.89222 0.93855 0.93692 0.92620 0.91394 0.88397 0.87460 0.79600 0.92568 0.89584 0.77967 0.93413 0.89826 0.90793 0.92879 0.91820 0.92030 0.78237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.55 10.70 -35.23 -0.38 -3.92 16 3 C 0.05 0.46 6.12 37.16 0.23 0.69 16 4 C 0.14 1.25 6.86 -4.04 -0.03 1.22 16 5 N -0.37 -4.63 3.65 -60.81 -0.22 -4.85 16 6 C 0.13 1.71 11.26 -16.56 -0.19 1.52 16 7 C -0.28 -4.46 6.05 -105.07 -0.64 -5.10 16 8 C 0.61 11.27 7.58 -12.52 -0.09 11.18 16 9 O -0.56 -11.65 16.19 5.27 0.09 -11.56 16 10 N -0.59 -10.31 3.06 -164.27 -0.50 -10.82 16 11 C 0.06 0.98 4.79 -2.53 -0.01 0.97 16 12 C 0.17 3.02 3.72 -65.78 -0.24 2.78 16 13 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 14 N -0.71 -16.84 5.23 -51.34 -0.27 -17.11 16 15 C -0.25 -6.52 9.96 -15.06 -0.15 -6.67 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 18 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 19 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.14 -2.12 6.07 -24.89 -0.15 -2.27 16 24 C 0.14 2.30 3.42 -66.95 -0.23 2.07 16 25 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 26 C -0.16 -2.21 9.10 37.16 0.34 -1.87 16 27 C 0.08 1.22 10.28 -16.98 -0.17 1.04 16 28 N -0.30 -4.45 12.33 30.86 0.38 -4.07 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.11 0.74 8.06 -51.93 -0.42 0.32 16 36 H 0.19 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.06 0.74 7.72 -51.93 -0.40 0.34 16 38 H 0.09 1.55 5.94 -51.93 -0.31 1.24 16 39 H 0.39 10.11 7.86 -40.82 -0.32 9.78 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.07 0.92 7.86 -51.93 -0.41 0.52 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 1.00 7.11 -51.93 -0.37 0.63 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.20 2.72 4.87 -52.49 -0.26 2.47 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -33.67 379.94 -6.90 -40.58 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -7.10 Total: 9.53 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -0.32 Total: 6.54 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: 0.11 Total: -63.88 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.29 Total: -15.48 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.67 -6.90 -40.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989733278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.648 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds