Wall clock time and date at job start Tue Mar 31 2020 14:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00185 * 2 1 4 4 C 1.53001 * 109.47019 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47442 * 179.97438 * 4 3 2 6 6 C 1.34262 * 125.75154 * 125.30486 * 5 4 3 7 7 C 1.38040 * 107.41330 * 180.11634 * 6 5 4 8 8 C 1.47431 * 126.41408 * 179.87294 * 7 6 5 9 9 O 1.21610 * 119.99937 * 352.82318 * 8 7 6 10 10 N 1.34777 * 120.00092 * 172.81936 * 8 7 6 11 11 C 1.47419 * 125.64733 * 354.10436 * 10 8 7 12 12 C 1.54916 * 104.83084 * 204.14972 * 11 10 8 13 13 H 1.09005 * 111.00266 * 204.91902 * 12 11 10 14 14 N 1.46499 * 111.00217 * 81.06535 * 12 11 10 15 15 C 1.36933 * 119.99839 * 92.80910 * 14 12 11 16 16 H 1.07997 * 120.00493 * 359.97438 * 15 14 12 17 17 C 1.38818 * 119.99905 * 179.97438 * 15 14 12 18 18 N 1.31619 * 119.99802 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99812 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47337 * 89.99898 * 19 17 15 21 21 H 1.48508 * 109.46515 * 209.99744 * 19 17 15 22 22 H 1.48497 * 109.46989 * 329.99256 * 19 17 15 23 23 C 1.55160 * 101.58228 * 322.98941 * 12 11 10 24 24 C 1.47025 * 125.64664 * 174.12893 * 10 8 7 25 25 H 1.08999 * 110.01312 * 59.43193 * 24 10 8 26 26 C 1.52999 * 109.88356 * 298.33776 * 24 10 8 27 27 C 1.41286 * 107.17465 * 359.61337 * 7 6 5 28 28 N 1.30448 * 108.02043 * 0.23924 * 27 7 6 29 29 H 1.08991 * 109.47410 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46484 * 299.99859 * 1 2 3 31 31 H 1.08998 * 109.46662 * 59.99394 * 1 2 3 32 32 H 1.09000 * 109.46835 * 60.00728 * 3 2 1 33 33 H 1.08993 * 109.47392 * 299.99954 * 3 2 1 34 34 H 1.09006 * 109.47116 * 60.00395 * 4 3 2 35 35 H 1.08998 * 109.47354 * 300.00443 * 4 3 2 36 36 H 1.07996 * 126.29398 * 359.96704 * 6 5 4 37 37 H 1.09000 * 110.36865 * 85.31419 * 11 10 8 38 38 H 1.08997 * 110.37059 * 322.98780 * 11 10 8 39 39 H 0.96999 * 119.99713 * 272.79960 * 14 12 11 40 40 H 0.97005 * 119.99522 * 179.97438 * 18 17 15 41 41 H 1.09001 * 110.71985 * 153.86381 * 23 12 11 42 42 H 1.08997 * 110.72293 * 276.96244 * 23 12 11 43 43 H 1.09004 * 109.46822 * 302.19276 * 26 24 10 44 44 H 1.09000 * 109.47269 * 62.19310 * 26 24 10 45 45 H 1.08999 * 109.46872 * 182.19397 * 26 24 10 46 46 H 1.07999 * 125.99281 * 180.24199 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1315 2.5228 -0.0013 6 6 5.0263 2.9835 0.8874 7 6 5.3279 4.2833 0.5341 8 6 6.2646 5.1845 1.2299 9 8 6.7586 4.8481 2.2890 10 7 6.5734 6.3812 0.6922 11 6 6.1479 6.8624 -0.6347 12 6 7.2060 7.9227 -1.0300 13 1 6.7941 8.6398 -1.7402 14 7 8.4110 7.2867 -1.5683 15 6 8.5387 7.0938 -2.9179 16 1 7.7510 7.4101 -3.5856 17 6 9.6808 6.4916 -3.4280 18 7 10.6410 6.1065 -2.6144 19 14 9.8546 6.2279 -5.2691 20 1 10.5080 7.4135 -5.8795 21 1 10.6838 5.0217 -5.5201 22 1 8.5105 6.0386 -5.8711 23 6 7.4964 8.5975 0.3366 24 6 7.3908 7.4226 1.3316 25 1 8.3848 7.0335 1.5525 26 6 6.7177 7.8929 2.6226 27 6 4.5756 4.5865 -0.6228 28 7 3.8690 3.5344 -0.9318 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 1.6887 1.8462 0.8901 33 1 1.6887 1.8463 -0.8899 34 1 3.8568 0.6438 -0.8909 35 1 3.8575 0.6434 0.8890 36 1 5.4333 2.4382 1.7261 37 1 5.1593 7.3174 -0.5742 38 1 6.1458 6.0425 -1.3529 39 1 9.1184 7.0023 -0.9686 40 1 11.4389 5.6854 -2.9708 41 1 8.4988 9.0255 0.3501 42 1 6.7498 9.3607 0.5562 43 1 5.7180 8.2639 2.3967 44 1 6.6467 7.0584 3.3202 45 1 7.3090 8.6915 3.0705 46 1 4.5841 5.5247 -1.1576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989733278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:15 Heat of formation + Delta-G solvation = 0.289034 kcal Electronic energy + Delta-G solvation = -27494.381423 eV Core-core repulsion = 23613.885025 eV Total energy + Delta-G solvation = -3880.496398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.49219 -40.81089 -39.01207 -38.54306 -35.75362 -35.07156 -33.14111 -32.82031 -31.44769 -30.13167 -29.98470 -27.29099 -26.83758 -25.71933 -24.87234 -24.22525 -22.22503 -21.98775 -21.10104 -20.13865 -19.24001 -18.46160 -17.62713 -17.44461 -17.33291 -16.68129 -16.59072 -16.28838 -16.12396 -15.57632 -15.37378 -15.29041 -14.93545 -14.85522 -14.50504 -14.26020 -14.08507 -13.68888 -13.45136 -13.16928 -13.10945 -13.02104 -12.83790 -12.73033 -12.66878 -12.36251 -12.19023 -12.18186 -12.00876 -11.94715 -11.59737 -11.42643 -10.99945 -10.80991 -10.77871 -10.63373 -9.86001 -9.48643 -8.92716 -7.90837 -5.19059 0.47939 1.13085 1.18286 1.49329 1.50334 1.58192 2.15512 2.48917 2.58586 2.71895 3.39178 3.45062 3.68449 3.77401 3.83490 3.90349 3.91840 4.00243 4.09802 4.16851 4.20236 4.29841 4.44350 4.44485 4.48363 4.51535 4.59446 4.60860 4.68558 4.75407 4.80830 4.81765 4.83849 4.99319 5.16998 5.24400 5.26010 5.35386 5.42068 5.58693 5.62957 5.75734 6.01346 6.30279 6.45478 6.70213 7.29498 7.36841 8.13000 8.34433 9.32762 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010788 B = 0.003465 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.876714 B = 8078.711443 C = 9898.047556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.060 3.940 4 C 0.128 3.872 5 N -0.357 5.357 6 C 0.136 3.864 7 C -0.309 4.309 8 C 0.602 3.398 9 O -0.596 6.596 10 N -0.598 5.598 11 C 0.070 3.930 12 C 0.155 3.845 13 H 0.093 0.907 14 N -0.725 5.725 15 C -0.231 4.231 16 H 0.087 0.913 17 C -0.079 4.079 18 N -0.972 5.972 19 Si 0.967 3.033 20 H -0.287 1.287 21 H -0.305 1.305 22 H -0.266 1.266 23 C -0.123 4.123 24 C 0.135 3.865 25 H 0.038 0.962 26 C -0.146 4.146 27 C 0.079 3.921 28 N -0.317 5.317 29 H 0.105 0.895 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.135 0.865 36 H 0.210 0.790 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.369 0.631 40 H 0.247 0.753 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.082 0.918 46 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.925 -4.531 8.034 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.018 4.018 4 C 0.008 3.992 5 N -0.136 5.136 6 C -0.016 4.016 7 C -0.323 4.323 8 C 0.393 3.607 9 O -0.479 6.479 10 N -0.329 5.329 11 C -0.055 4.055 12 C 0.045 3.955 13 H 0.110 0.890 14 N -0.363 5.363 15 C -0.363 4.363 16 H 0.105 0.895 17 C -0.271 4.271 18 N -0.623 5.623 19 Si 0.797 3.203 20 H -0.214 1.214 21 H -0.233 1.233 22 H -0.191 1.191 23 C -0.162 4.162 24 C 0.032 3.968 25 H 0.056 0.944 26 C -0.204 4.204 27 C -0.108 4.108 28 N -0.137 5.137 29 H 0.123 0.877 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.153 0.847 36 H 0.226 0.774 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.200 0.800 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.132 0.868 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -21.574 -5.581 7.570 23.535 hybrid contribution 1.462 -0.020 -0.252 1.484 sum -20.112 -5.601 7.318 22.122 Atomic orbital electron populations 1.22975 0.78644 1.04302 1.00960 1.87754 1.22060 1.26870 1.95682 1.22506 0.92255 0.85318 1.01706 1.21757 0.92856 0.77384 1.07161 1.48511 1.32405 1.12575 1.20134 1.23259 0.90200 0.93688 0.94459 1.20253 1.10685 0.97161 1.04228 1.17164 0.80058 0.79899 0.83570 1.90681 1.56667 1.75371 1.25198 1.48214 1.51037 1.14960 1.18640 1.23600 0.99592 0.99252 0.83079 1.21707 0.86876 0.92657 0.94249 0.88961 1.42543 1.18534 1.71074 1.04181 1.19696 1.01277 1.30478 0.84838 0.89515 1.25537 0.97284 1.02723 1.01517 1.69844 1.09125 1.48378 1.34977 0.85219 0.77685 0.76451 0.80905 1.21439 1.23264 1.19070 1.23010 1.03687 0.96241 0.93244 1.21515 0.93309 0.87771 0.94220 0.94357 1.22015 1.01413 1.01124 0.95844 1.24905 0.92811 0.98736 0.94325 1.77118 1.25322 0.97263 1.13986 0.87709 0.93003 0.93370 0.92290 0.92518 0.88119 0.84727 0.77355 0.88333 0.91419 0.79975 0.94428 0.90735 0.86750 0.91038 0.94009 0.89922 0.77348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -6.64 10.70 -148.98 -1.59 -8.24 16 3 C 0.06 0.97 6.12 71.98 0.44 1.41 16 4 C 0.13 2.12 6.86 86.38 0.59 2.72 16 5 N -0.36 -8.49 3.65 -346.29 -1.26 -9.76 16 6 C 0.14 3.54 11.26 84.27 0.95 4.49 16 7 C -0.31 -9.80 6.05 -20.15 -0.12 -9.92 16 8 C 0.60 22.31 7.58 86.66 0.66 22.97 16 9 O -0.60 -25.22 16.19 -4.06 -0.07 -25.29 16 10 N -0.60 -20.41 3.06 -791.87 -2.43 -22.84 16 11 C 0.07 2.14 4.79 86.86 0.42 2.56 16 12 C 0.16 5.29 3.72 46.39 0.17 5.46 16 13 H 0.09 2.85 8.09 -2.38 -0.02 2.83 16 14 N -0.73 -34.37 5.23 -316.35 -1.66 -36.03 16 15 C -0.23 -12.10 9.96 84.04 0.84 -11.26 16 16 H 0.09 4.21 7.83 -2.91 -0.02 4.19 16 17 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 18 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 19 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.31 -14.94 7.11 99.48 0.71 -14.24 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 C -0.12 -3.48 6.07 31.79 0.19 -3.29 16 24 C 0.13 4.34 3.42 45.34 0.16 4.50 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 C -0.15 -3.83 9.10 71.98 0.66 -3.17 16 27 C 0.08 2.31 10.28 85.65 0.88 3.19 16 28 N -0.32 -8.98 12.33 -56.28 -0.69 -9.68 16 29 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.13 1.50 8.06 -2.39 -0.02 1.48 16 36 H 0.21 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.10 2.24 7.72 -2.39 -0.02 2.22 16 38 H 0.07 2.36 5.94 -2.39 -0.01 2.35 16 39 H 0.37 19.86 7.86 -92.71 -0.73 19.13 16 40 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 42 H 0.11 2.36 7.86 -2.39 -0.02 2.34 16 43 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.04 1.28 7.11 -2.39 -0.02 1.27 16 45 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.21 5.38 4.87 -2.91 -0.01 5.37 16 Total: -1.00 -74.85 379.94 2.41 -72.44 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: 0.26 Total: 34.15 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 7.54 Total: 17.21 kcal Atomic # 7 Polarization: -132.24 SS G_CDS: -5.76 Total: -138.00 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -1.66 Total: -33.52 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -74.85 2.41 -72.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989733278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.729 kcal (2) G-P(sol) polarization free energy of solvation -74.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds