Wall clock time and date at job start Tue Mar 31 2020 14:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99735 * 2 1 4 4 C 1.53003 * 109.47123 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47195 * 179.97438 * 4 3 2 6 6 C 1.34264 * 125.75124 * 125.00112 * 5 4 3 7 7 C 1.38036 * 107.41655 * 179.73823 * 6 5 4 8 8 C 1.47430 * 126.41617 * 180.02562 * 7 6 5 9 9 O 1.21606 * 119.99827 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00234 * 179.97438 * 8 7 6 11 11 C 1.47025 * 125.64670 * 0.02562 * 10 8 7 12 12 C 1.54322 * 107.26885 * 181.02571 * 11 10 8 13 13 H 1.09004 * 110.72033 * 263.82560 * 12 11 10 14 14 N 1.46504 * 110.71964 * 140.55862 * 12 11 10 15 15 C 1.36936 * 120.00004 * 86.45406 * 14 12 11 16 16 H 1.08002 * 119.99931 * 359.97438 * 15 14 12 17 17 C 1.38813 * 120.00080 * 180.02562 * 15 14 12 18 18 N 1.31626 * 119.99701 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00253 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47171 * 89.99995 * 19 17 15 21 21 H 1.48500 * 109.47308 * 210.00065 * 19 17 15 22 22 H 1.48501 * 109.47220 * 330.00021 * 19 17 15 23 23 C 1.55159 * 102.94361 * 22.19411 * 12 11 10 24 24 C 1.47419 * 125.64937 * 179.71719 * 10 8 7 25 25 H 1.08999 * 110.36265 * 274.74327 * 24 10 8 26 26 C 1.53004 * 110.37007 * 37.06527 * 24 10 8 27 27 C 1.41294 * 107.17120 * 359.97438 * 7 6 5 28 28 N 1.30440 * 108.02337 * 0.02562 * 27 7 6 29 29 H 1.09003 * 109.47024 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47098 * 299.99971 * 1 2 3 31 31 H 1.09004 * 109.47218 * 59.99895 * 1 2 3 32 32 H 1.08997 * 109.47536 * 60.00137 * 3 2 1 33 33 H 1.09000 * 109.47032 * 300.00110 * 3 2 1 34 34 H 1.09005 * 109.47182 * 59.99654 * 4 3 2 35 35 H 1.08995 * 109.46907 * 300.00282 * 4 3 2 36 36 H 1.07998 * 126.29078 * 359.71108 * 6 5 4 37 37 H 1.09004 * 109.88292 * 300.44349 * 11 10 8 38 38 H 1.09000 * 109.88343 * 61.45326 * 11 10 8 39 39 H 0.97000 * 119.99919 * 266.45080 * 14 12 11 40 40 H 0.96999 * 119.99771 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.99914 * 82.57349 * 23 12 11 42 42 H 1.08999 * 111.00224 * 206.42380 * 23 12 11 43 43 H 1.08994 * 109.47072 * 58.54431 * 26 24 10 44 44 H 1.08992 * 109.47282 * 178.54977 * 26 24 10 45 45 H 1.09003 * 109.46865 * 298.55026 * 26 24 10 46 46 H 1.08004 * 125.98877 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5231 -0.0013 6 6 5.0217 2.9858 0.8908 7 6 5.3314 4.2820 0.5312 8 6 6.2692 5.1827 1.2259 9 8 6.8563 4.8000 2.2198 10 7 6.4760 6.4302 0.7596 11 6 5.8353 7.0192 -0.4254 12 6 6.3941 8.4487 -0.5854 13 1 5.7229 9.1781 -0.1319 14 7 6.6225 8.7608 -1.9984 15 6 5.6024 9.2615 -2.7626 16 1 4.6294 9.4258 -2.3237 17 6 5.8187 9.5567 -4.1016 18 7 7.0041 9.3549 -4.6369 19 14 4.4270 10.2389 -5.1442 20 1 4.4359 11.7222 -5.0724 21 1 4.6091 9.8106 -6.5544 22 1 3.1297 9.7264 -4.6348 23 6 7.7383 8.3849 0.1870 24 6 7.3773 7.4323 1.3569 25 1 6.8655 7.9781 2.1496 26 6 8.6378 6.7575 1.9016 27 6 4.5821 4.5836 -0.6282 28 7 3.8732 3.5326 -0.9353 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.8567 0.6439 -0.8909 35 1 3.8574 0.6437 0.8890 36 1 5.4217 2.4436 1.7348 37 1 6.0739 6.4268 -1.3088 38 1 4.7551 7.0545 -0.2837 39 1 7.4963 8.6129 -2.3927 40 1 7.1553 9.5616 -5.5725 41 1 8.5270 7.9630 -0.4359 42 1 8.0216 9.3691 0.5600 43 1 9.1449 6.2292 1.0942 44 1 9.3045 7.5136 2.3161 45 1 8.3620 6.0488 2.6825 46 1 4.5943 5.5202 -1.1659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989733279.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:19 Heat of formation + Delta-G solvation = 26.143719 kcal Electronic energy + Delta-G solvation = -27230.582539 eV Core-core repulsion = 23351.207284 eV Total energy + Delta-G solvation = -3879.375255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.45795 -39.59760 -38.35893 -37.14808 -34.21881 -34.13409 -31.77825 -31.38087 -30.44912 -29.12503 -28.37743 -26.68334 -25.53702 -24.15808 -23.82199 -22.82348 -21.08534 -20.82252 -20.04254 -19.03679 -17.49382 -17.21455 -16.68896 -16.55180 -16.22637 -15.77337 -15.69897 -15.01303 -14.85575 -14.48279 -14.09182 -13.80695 -13.68603 -13.60443 -13.37176 -13.17827 -12.72581 -12.62989 -12.41692 -12.05682 -12.01649 -11.84644 -11.77380 -11.67609 -11.21631 -10.99344 -10.92584 -10.70497 -10.65324 -10.31126 -10.17101 -10.03227 -9.75600 -9.64821 -9.36418 -8.99128 -8.75567 -8.21409 -7.10179 -5.85608 -3.16706 1.49279 2.05265 2.26640 3.31386 3.37081 3.39647 3.45455 3.46729 3.66334 4.24174 4.47528 4.51676 4.67615 4.72817 4.81389 4.91326 4.92687 4.99477 5.13034 5.18297 5.23310 5.26014 5.28499 5.30544 5.48604 5.51052 5.59402 5.63685 5.73318 5.88083 5.92840 6.13173 6.14826 6.22348 6.41684 6.45112 6.51343 6.53580 6.55744 6.72060 6.77525 6.89921 7.51716 7.62699 7.91298 8.31740 8.53459 9.43942 9.97853 10.32596 11.36272 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009581 B = 0.003437 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.692364 B = 8145.866330 C =10696.488705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.136 3.864 5 N -0.366 5.366 6 C 0.125 3.875 7 C -0.283 4.283 8 C 0.609 3.391 9 O -0.561 6.561 10 N -0.604 5.604 11 C 0.067 3.933 12 C 0.171 3.829 13 H 0.066 0.934 14 N -0.713 5.713 15 C -0.249 4.249 16 H 0.073 0.927 17 C -0.008 4.008 18 N -0.929 5.929 19 Si 0.907 3.093 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C -0.136 4.136 24 C 0.139 3.861 25 H 0.072 0.928 26 C -0.163 4.163 27 C 0.079 3.921 28 N -0.298 5.298 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.187 0.813 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.084 0.916 46 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.921 -14.785 12.672 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.310 6.310 3 C -0.027 4.027 4 C 0.014 3.986 5 N -0.147 5.147 6 C -0.025 4.025 7 C -0.298 4.298 8 C 0.399 3.601 9 O -0.442 6.442 10 N -0.337 5.337 11 C -0.059 4.059 12 C 0.059 3.941 13 H 0.084 0.916 14 N -0.353 5.353 15 C -0.380 4.380 16 H 0.091 0.909 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.738 3.262 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.175 4.175 24 C 0.036 3.964 25 H 0.090 0.910 26 C -0.221 4.221 27 C -0.109 4.109 28 N -0.118 5.118 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.204 0.796 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.222 0.778 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.604 -15.790 12.267 21.392 hybrid contribution -0.198 0.874 -0.400 0.981 sum -7.802 -14.916 11.867 20.596 Atomic orbital electron populations 1.22781 0.79956 1.03048 1.00460 1.87768 1.20580 1.26983 1.95628 1.22663 0.92526 0.85283 1.02237 1.21438 0.92682 0.78912 1.05533 1.48364 1.33185 1.12149 1.20960 1.22897 0.91094 0.94273 0.94270 1.20271 1.10149 0.96235 1.03142 1.16827 0.80531 0.79873 0.82855 1.90663 1.51167 1.75457 1.26895 1.48331 1.44139 1.12000 1.29221 1.23588 0.96896 0.98531 0.86886 1.21198 0.93982 0.91883 0.87051 0.91608 1.42388 1.12850 1.75991 1.04104 1.19243 0.91768 1.35504 0.91520 0.90903 1.24768 0.96814 1.01768 0.97085 1.69663 1.21055 1.53728 1.13142 0.86201 0.81402 0.78749 0.79877 1.21639 1.21741 1.20601 1.23185 0.99157 0.98946 0.96223 1.21884 0.90494 0.88574 0.95421 0.90968 1.22163 0.96230 1.01174 1.02483 1.25091 0.92628 0.98321 0.94855 1.77246 1.24678 0.96938 1.12910 0.89209 0.93822 0.93621 0.92581 0.91299 0.88399 0.87491 0.79595 0.90413 0.92000 0.77817 0.93334 0.90435 0.90190 0.92800 0.92465 0.89756 0.77649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.46 10.70 -35.23 -0.38 -3.84 16 3 C 0.05 0.44 6.12 37.16 0.23 0.67 16 4 C 0.14 1.15 6.86 -4.04 -0.03 1.12 16 5 N -0.37 -4.34 3.65 -60.81 -0.22 -4.56 16 6 C 0.13 1.53 11.25 -16.56 -0.19 1.34 16 7 C -0.28 -4.21 6.09 -105.07 -0.64 -4.85 16 8 C 0.61 10.06 7.63 -12.52 -0.10 9.96 16 9 O -0.56 -10.11 14.55 5.27 0.08 -10.03 16 10 N -0.60 -9.66 3.24 -164.17 -0.53 -10.19 16 11 C 0.07 1.11 4.74 -3.06 -0.01 1.10 16 12 C 0.17 3.10 3.59 -66.09 -0.24 2.86 16 13 H 0.07 1.19 8.12 -51.93 -0.42 0.76 16 14 N -0.71 -16.46 5.18 -51.65 -0.27 -16.73 16 15 C -0.25 -6.44 9.98 -15.06 -0.15 -6.59 16 16 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 18 N -0.93 -26.90 13.06 55.49 0.72 -26.18 16 19 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.14 -2.11 6.12 -24.46 -0.15 -2.26 16 24 C 0.14 2.05 3.78 -66.30 -0.25 1.80 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 C -0.16 -2.30 8.71 37.16 0.32 -1.98 16 27 C 0.08 1.18 10.44 -16.98 -0.18 1.01 16 28 N -0.30 -4.38 12.34 30.86 0.38 -4.00 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.11 0.64 8.06 -51.93 -0.42 0.22 16 36 H 0.19 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.08 1.41 6.72 -51.93 -0.35 1.06 16 38 H 0.06 0.97 6.99 -51.93 -0.36 0.61 16 39 H 0.39 9.65 7.71 -40.82 -0.31 9.33 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.08 1.27 7.93 -51.93 -0.41 0.86 16 42 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 1.31 5.88 -51.93 -0.31 1.01 16 46 H 0.21 3.12 4.47 -52.48 -0.23 2.89 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -31.70 376.89 -6.94 -38.64 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -7.02 Total: 9.53 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -0.36 Total: 5.21 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: 0.08 Total: -61.66 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.30 Total: -13.88 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.70 -6.94 -38.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989733279.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.780 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds