Wall clock time and date at job start Tue Mar 31 2020 14:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99735 * 2 1 4 4 C 1.53003 * 109.47123 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47195 * 179.97438 * 4 3 2 6 6 C 1.34264 * 125.75124 * 125.00112 * 5 4 3 7 7 C 1.38036 * 107.41655 * 179.73823 * 6 5 4 8 8 C 1.47430 * 126.41617 * 180.02562 * 7 6 5 9 9 O 1.21606 * 119.99827 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00234 * 179.97438 * 8 7 6 11 11 C 1.47025 * 125.64670 * 0.02562 * 10 8 7 12 12 C 1.54322 * 107.26885 * 181.02571 * 11 10 8 13 13 H 1.09004 * 110.72033 * 263.82560 * 12 11 10 14 14 N 1.46504 * 110.71964 * 140.55862 * 12 11 10 15 15 C 1.36936 * 120.00004 * 86.45406 * 14 12 11 16 16 H 1.08002 * 119.99931 * 359.97438 * 15 14 12 17 17 C 1.38813 * 120.00080 * 180.02562 * 15 14 12 18 18 N 1.31626 * 119.99701 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00253 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47171 * 89.99995 * 19 17 15 21 21 H 1.48500 * 109.47308 * 210.00065 * 19 17 15 22 22 H 1.48501 * 109.47220 * 330.00021 * 19 17 15 23 23 C 1.55159 * 102.94361 * 22.19411 * 12 11 10 24 24 C 1.47419 * 125.64937 * 179.71719 * 10 8 7 25 25 H 1.08999 * 110.36265 * 274.74327 * 24 10 8 26 26 C 1.53004 * 110.37007 * 37.06527 * 24 10 8 27 27 C 1.41294 * 107.17120 * 359.97438 * 7 6 5 28 28 N 1.30440 * 108.02337 * 0.02562 * 27 7 6 29 29 H 1.09003 * 109.47024 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47098 * 299.99971 * 1 2 3 31 31 H 1.09004 * 109.47218 * 59.99895 * 1 2 3 32 32 H 1.08997 * 109.47536 * 60.00137 * 3 2 1 33 33 H 1.09000 * 109.47032 * 300.00110 * 3 2 1 34 34 H 1.09005 * 109.47182 * 59.99654 * 4 3 2 35 35 H 1.08995 * 109.46907 * 300.00282 * 4 3 2 36 36 H 1.07998 * 126.29078 * 359.71108 * 6 5 4 37 37 H 1.09004 * 109.88292 * 300.44349 * 11 10 8 38 38 H 1.09000 * 109.88343 * 61.45326 * 11 10 8 39 39 H 0.97000 * 119.99919 * 266.45080 * 14 12 11 40 40 H 0.96999 * 119.99771 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.99914 * 82.57349 * 23 12 11 42 42 H 1.08999 * 111.00224 * 206.42380 * 23 12 11 43 43 H 1.08994 * 109.47072 * 58.54431 * 26 24 10 44 44 H 1.08992 * 109.47282 * 178.54977 * 26 24 10 45 45 H 1.09003 * 109.46865 * 298.55026 * 26 24 10 46 46 H 1.08004 * 125.98877 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5231 -0.0013 6 6 5.0217 2.9858 0.8908 7 6 5.3314 4.2820 0.5312 8 6 6.2692 5.1827 1.2259 9 8 6.8563 4.8000 2.2198 10 7 6.4760 6.4302 0.7596 11 6 5.8353 7.0192 -0.4254 12 6 6.3941 8.4487 -0.5854 13 1 5.7229 9.1781 -0.1319 14 7 6.6225 8.7608 -1.9984 15 6 5.6024 9.2615 -2.7626 16 1 4.6294 9.4258 -2.3237 17 6 5.8187 9.5567 -4.1016 18 7 7.0041 9.3549 -4.6369 19 14 4.4270 10.2389 -5.1442 20 1 4.4359 11.7222 -5.0724 21 1 4.6091 9.8106 -6.5544 22 1 3.1297 9.7264 -4.6348 23 6 7.7383 8.3849 0.1870 24 6 7.3773 7.4323 1.3569 25 1 6.8655 7.9781 2.1496 26 6 8.6378 6.7575 1.9016 27 6 4.5821 4.5836 -0.6282 28 7 3.8732 3.5326 -0.9353 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.8567 0.6439 -0.8909 35 1 3.8574 0.6437 0.8890 36 1 5.4217 2.4436 1.7348 37 1 6.0739 6.4268 -1.3088 38 1 4.7551 7.0545 -0.2837 39 1 7.4963 8.6129 -2.3927 40 1 7.1553 9.5616 -5.5725 41 1 8.5270 7.9630 -0.4359 42 1 8.0216 9.3691 0.5600 43 1 9.1449 6.2292 1.0942 44 1 9.3045 7.5136 2.3161 45 1 8.3620 6.0488 2.6825 46 1 4.5943 5.5202 -1.1659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989733279.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:18 Heat of formation + Delta-G solvation = 4.677231 kcal Electronic energy + Delta-G solvation = -27231.513396 eV Core-core repulsion = 23351.207284 eV Total energy + Delta-G solvation = -3880.306112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.51479 -40.85834 -39.01417 -38.51745 -35.90419 -35.09469 -33.22383 -32.90934 -31.45029 -30.11909 -29.93617 -27.28997 -26.81045 -25.86219 -24.79937 -24.02892 -22.18967 -22.06707 -21.31760 -20.22128 -19.16173 -18.35611 -17.61117 -17.45303 -17.38243 -16.87718 -16.53217 -16.41491 -16.02104 -15.69663 -15.38847 -15.19601 -15.02494 -14.77897 -14.50527 -14.30365 -14.19876 -13.80049 -13.32789 -13.27030 -13.07034 -12.98748 -12.86322 -12.77767 -12.71963 -12.37118 -12.28982 -12.08874 -12.02187 -11.95039 -11.68123 -11.48358 -10.96579 -10.80731 -10.66493 -10.56663 -9.86695 -9.47623 -9.02926 -7.91595 -5.21098 0.47963 1.09526 1.18901 1.52123 1.52538 1.60589 2.08173 2.43945 2.59630 2.70930 3.39487 3.40665 3.64777 3.77437 3.83525 3.88400 3.88814 3.95450 4.07018 4.17122 4.25141 4.29091 4.36142 4.43527 4.47493 4.49369 4.57015 4.60694 4.61399 4.70006 4.80235 4.80875 4.84801 4.91521 5.17181 5.18960 5.28202 5.36083 5.39067 5.58503 5.64298 5.77373 5.99886 6.29378 6.45160 6.62473 7.26779 7.37280 8.09386 8.32885 9.31445 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009581 B = 0.003437 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.692364 B = 8145.866330 C =10696.488705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.056 3.944 4 C 0.130 3.870 5 N -0.357 5.357 6 C 0.145 3.855 7 C -0.312 4.312 8 C 0.607 3.393 9 O -0.578 6.578 10 N -0.607 5.607 11 C 0.084 3.916 12 C 0.164 3.836 13 H 0.073 0.927 14 N -0.724 5.724 15 C -0.238 4.238 16 H 0.083 0.917 17 C -0.071 4.071 18 N -0.968 5.968 19 Si 0.967 3.033 20 H -0.289 1.289 21 H -0.301 1.301 22 H -0.268 1.268 23 C -0.125 4.125 24 C 0.139 3.861 25 H 0.088 0.912 26 C -0.154 4.154 27 C 0.071 3.929 28 N -0.321 5.321 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.102 0.898 35 H 0.141 0.859 36 H 0.219 0.781 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.375 0.625 40 H 0.250 0.750 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.040 0.960 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.920 -15.782 14.470 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.021 4.021 4 C 0.010 3.990 5 N -0.136 5.136 6 C -0.007 4.007 7 C -0.326 4.326 8 C 0.399 3.601 9 O -0.461 6.461 10 N -0.339 5.339 11 C -0.042 4.042 12 C 0.054 3.946 13 H 0.091 0.909 14 N -0.363 5.363 15 C -0.370 4.370 16 H 0.100 0.900 17 C -0.263 4.263 18 N -0.618 5.618 19 Si 0.796 3.204 20 H -0.216 1.216 21 H -0.228 1.228 22 H -0.192 1.192 23 C -0.164 4.164 24 C 0.036 3.964 25 H 0.106 0.894 26 C -0.212 4.212 27 C -0.116 4.116 28 N -0.141 5.141 29 H 0.124 0.876 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.121 0.879 35 H 0.158 0.842 36 H 0.236 0.764 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.208 0.792 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.059 0.941 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -8.647 -16.802 14.108 23.582 hybrid contribution 0.065 1.064 -0.855 1.367 sum -8.582 -15.738 13.253 22.293 Atomic orbital electron populations 1.22974 0.78741 1.04327 1.00866 1.87746 1.21950 1.26771 1.95667 1.22534 0.92722 0.85331 1.01528 1.21769 0.92466 0.77309 1.07446 1.48592 1.32595 1.12545 1.19890 1.23348 0.89773 0.93342 0.94253 1.20289 1.11129 0.97444 1.03770 1.17041 0.80499 0.79923 0.82684 1.90649 1.52026 1.75726 1.27671 1.48359 1.44300 1.12339 1.28905 1.23208 0.97270 0.97061 0.86699 1.21401 0.95877 0.92558 0.84796 0.90930 1.42521 1.11776 1.76103 1.05920 1.19638 0.92517 1.33151 0.91683 0.89960 1.25493 0.98806 1.03487 0.98555 1.69811 1.22982 1.56133 1.12899 0.85241 0.79469 0.77904 0.77762 1.21587 1.22805 1.19238 1.23098 0.97236 1.00130 0.95899 1.22008 0.90815 0.88254 0.95309 0.89381 1.22070 0.96137 1.01396 1.01555 1.24953 0.93130 0.98371 0.95156 1.77187 1.25171 0.97573 1.14198 0.87565 0.93035 0.93623 0.92365 0.92995 0.87938 0.84156 0.76404 0.92269 0.91130 0.79207 0.94144 0.91567 0.88386 0.94094 0.90037 0.90956 0.78622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.54 16 2 O -0.40 -6.42 10.70 -148.98 -1.59 -8.01 16 3 C 0.06 0.90 6.12 71.98 0.44 1.34 16 4 C 0.13 1.90 6.86 86.38 0.59 2.49 16 5 N -0.36 -7.81 3.65 -346.30 -1.26 -9.07 16 6 C 0.14 3.22 11.25 84.27 0.95 4.17 16 7 C -0.31 -8.98 6.09 -20.15 -0.12 -9.10 16 8 C 0.61 19.51 7.63 86.66 0.66 20.17 16 9 O -0.58 -20.12 14.55 -4.05 -0.06 -20.18 16 10 N -0.61 -18.91 3.24 -791.55 -2.57 -21.48 16 11 C 0.08 2.76 4.74 86.73 0.41 3.17 16 12 C 0.16 5.82 3.59 46.18 0.17 5.99 16 13 H 0.07 2.51 8.12 -2.39 -0.02 2.49 16 14 N -0.72 -33.60 5.18 -317.31 -1.64 -35.24 16 15 C -0.24 -12.27 9.98 84.03 0.84 -11.43 16 16 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 17 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 18 N -0.97 -57.34 13.06 21.65 0.28 -57.06 16 19 Si 0.97 44.54 29.55 68.60 2.03 46.57 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 C -0.12 -3.73 6.12 32.07 0.20 -3.53 16 24 C 0.14 3.87 3.78 45.55 0.17 4.04 16 25 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 26 C -0.15 -4.12 8.71 71.98 0.63 -3.49 16 27 C 0.07 2.13 10.44 85.65 0.89 3.03 16 28 N -0.32 -9.28 12.34 -56.27 -0.69 -9.97 16 29 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.48 8.14 -2.38 -0.02 0.47 16 31 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.14 1.15 8.06 -2.39 -0.02 1.13 16 36 H 0.22 3.31 8.06 -2.91 -0.02 3.28 16 37 H 0.06 2.20 6.72 -2.39 -0.02 2.18 16 38 H 0.07 2.20 6.99 -2.39 -0.02 2.18 16 39 H 0.38 19.10 7.71 -92.71 -0.72 18.38 16 40 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.07 2.15 7.93 -2.39 -0.02 2.13 16 42 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.07 2.15 5.88 -2.39 -0.01 2.14 16 46 H 0.20 6.10 4.47 -2.91 -0.01 6.09 16 Total: -1.00 -68.22 376.89 2.31 -65.92 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.28 Total: 33.55 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 7.54 Total: 14.97 kcal Atomic # 7 Polarization: -126.94 SS G_CDS: -5.88 Total: -132.82 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -1.65 Total: -28.19 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -68.22 2.31 -65.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989733279.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.593 kcal (2) G-P(sol) polarization free energy of solvation -68.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds