Wall clock time and date at job start Tue Mar 31 2020 14:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35760 * 117.00196 * 2 1 4 4 C 1.35593 * 126.08692 * 178.98659 * 3 2 1 5 5 C 1.41054 * 107.80112 * 180.15625 * 4 3 2 6 6 C 1.47723 * 125.98561 * 179.82981 * 5 4 3 7 7 O 1.21576 * 119.99698 * 359.71801 * 6 5 4 8 8 N 1.34772 * 120.00678 * 179.72022 * 6 5 4 9 9 C 1.46492 * 120.00476 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.49700 * 35.06122 * 9 8 6 11 11 C 1.53045 * 109.49840 * 274.99585 * 9 8 6 12 12 C 1.53039 * 109.53840 * 301.41597 * 11 9 8 13 13 C 1.53193 * 109.31045 * 298.63111 * 12 11 9 14 14 N 1.46929 * 108.77365 * 54.63588 * 13 12 11 15 15 C 1.36937 * 120.62499 * 126.37067 * 14 13 12 16 16 H 1.08000 * 119.99381 * 209.99301 * 15 14 13 17 17 C 1.38806 * 120.00590 * 29.99878 * 15 14 13 18 18 N 1.31619 * 120.00016 * 23.80944 * 17 15 14 19 19 Si 1.86798 * 120.00009 * 203.82042 * 17 15 14 20 20 H 1.48499 * 109.47143 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47458 * 299.99464 * 19 17 15 22 22 H 1.48504 * 109.47394 * 59.99791 * 19 17 15 23 23 C 1.46924 * 118.73826 * 306.64072 * 14 13 12 24 24 H 1.08996 * 109.58950 * 293.56887 * 23 14 13 25 25 C 1.53005 * 109.58231 * 173.14804 * 23 14 13 26 26 N 1.31868 * 108.03622 * 359.56826 * 5 4 3 27 27 N 1.35850 * 126.08721 * 358.67064 * 3 2 1 28 28 C 1.46504 * 125.94190 * 0.03035 * 27 3 2 29 29 H 1.09003 * 109.47235 * 52.33005 * 1 2 3 30 30 H 1.08997 * 109.47609 * 172.33331 * 1 2 3 31 31 H 1.09004 * 109.47198 * 292.33163 * 1 2 3 32 32 H 1.08000 * 126.10064 * 359.97438 * 4 3 2 33 33 H 0.97004 * 119.99758 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.45901 * 181.38835 * 11 9 8 35 35 H 1.09008 * 109.44545 * 61.42961 * 11 9 8 36 36 H 1.09000 * 109.49511 * 178.68251 * 12 11 9 37 37 H 1.08995 * 109.52291 * 58.59941 * 12 11 9 38 38 H 1.09005 * 109.58805 * 294.85349 * 13 12 11 39 39 H 1.08998 * 109.70547 * 174.49688 * 13 12 11 40 40 H 0.97004 * 119.99984 * 6.01141 * 18 17 15 41 41 H 1.08993 * 109.47623 * 59.99833 * 25 23 14 42 42 H 1.08998 * 109.46806 * 180.02562 * 25 23 14 43 43 H 1.09005 * 109.47121 * 299.99729 * 25 23 14 44 44 H 1.09002 * 109.47166 * 276.79546 * 28 27 3 45 45 H 1.08997 * 109.47081 * 36.80251 * 28 27 3 46 46 H 1.08999 * 109.46370 * 156.79797 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.3841 1.4238 0.0194 5 6 3.5979 2.8180 0.0152 6 6 4.9108 3.4950 0.0353 7 8 5.9332 2.8377 0.0629 8 7 4.9753 4.8411 0.0230 9 6 6.2772 5.5123 0.0434 10 1 6.9980 4.9255 -0.5259 11 6 6.7586 5.6493 1.4897 12 6 5.7308 6.4444 2.2981 13 6 5.5917 7.8478 1.6999 14 7 5.2705 7.7233 0.2716 15 6 4.1772 8.3576 -0.2554 16 1 3.6609 7.9297 -1.1020 17 6 3.7327 9.5502 0.2983 18 7 4.5644 10.3102 0.9789 19 14 1.9540 10.0767 0.0779 20 1 1.7345 11.3772 0.7603 21 1 1.6560 10.2204 -1.3697 22 1 1.0573 9.0508 0.6685 23 6 6.1411 6.9006 -0.5792 24 1 7.1251 7.3638 -0.6512 25 6 5.5259 6.7768 -1.9746 26 7 2.4207 3.4115 -0.0154 27 7 1.4308 2.4209 -0.0255 28 6 -0.0158 2.6507 -0.0572 29 1 -0.3634 0.6280 -0.8135 30 1 -0.3634 -1.0184 -0.1371 31 1 -0.3634 0.3905 0.9506 32 1 4.1501 0.6627 0.0380 33 1 4.1595 5.3655 0.0005 34 1 7.7157 6.1708 1.5060 35 1 6.8775 4.6583 1.9280 36 1 6.0631 6.5215 3.3334 37 1 4.7672 5.9364 2.2622 38 1 6.5301 8.3899 1.8175 39 1 4.7923 8.3866 2.2087 40 1 5.5064 10.0822 1.0202 41 1 5.4213 7.7683 -2.4149 42 1 6.1730 6.1658 -2.6040 43 1 4.5450 6.3075 -1.8989 44 1 -0.3730 2.5766 -1.0843 45 1 -0.5162 1.9017 0.5566 46 1 -0.2342 3.6448 0.3327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993576699.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:15 Heat of formation + Delta-G solvation = 45.649958 kcal Electronic energy + Delta-G solvation = -28636.172495 eV Core-core repulsion = 24757.643094 eV Total energy + Delta-G solvation = -3878.529401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.70681 -39.68374 -38.48600 -37.50173 -34.12842 -33.62008 -32.47236 -31.75441 -30.28290 -29.16086 -28.11190 -26.69542 -26.13967 -24.89175 -23.45906 -21.73716 -21.50095 -20.94524 -19.86735 -18.71189 -18.28511 -16.99700 -16.94948 -16.39368 -15.84986 -15.38377 -15.17308 -15.03236 -14.57217 -14.47713 -14.17584 -13.99356 -13.71483 -13.58041 -13.46267 -13.11552 -13.06768 -13.02081 -12.59450 -11.81273 -11.70480 -11.56144 -11.43281 -11.19749 -10.98102 -10.83972 -10.77199 -10.60803 -10.18922 -10.06115 -10.03814 -9.79954 -9.74653 -9.28110 -9.10573 -8.55259 -8.51856 -8.34590 -6.86123 -6.02452 -3.23999 1.39141 2.00649 2.15647 2.63876 3.48533 3.51536 3.56703 3.63602 3.69476 4.07898 4.40538 4.51151 4.58206 4.74160 4.80599 4.87588 5.15315 5.17940 5.20578 5.32429 5.44405 5.51410 5.61053 5.68370 5.76285 5.83456 5.88724 6.08105 6.19403 6.22815 6.33957 6.39275 6.44217 6.54929 6.60353 6.68806 6.85496 6.95732 7.03174 7.10096 7.13576 7.23814 7.30986 8.02871 8.04968 8.55324 8.60527 9.12486 9.86179 10.30634 11.24113 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012817 B = 0.004235 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.994429 B = 6609.838421 C = 8055.716462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.289 6.289 3 C 0.263 3.737 4 C -0.235 4.235 5 C 0.061 3.939 6 C 0.593 3.407 7 O -0.540 6.540 8 N -0.683 5.683 9 C 0.133 3.867 10 H 0.080 0.920 11 C -0.122 4.122 12 C -0.136 4.136 13 C 0.152 3.848 14 N -0.593 5.593 15 C -0.348 4.348 16 H 0.061 0.939 17 C -0.021 4.021 18 N -0.916 5.916 19 Si 1.061 2.939 20 H -0.287 1.287 21 H -0.294 1.294 22 H -0.294 1.294 23 C 0.161 3.839 24 H 0.039 0.961 25 C -0.134 4.134 26 N -0.239 5.239 27 N -0.394 5.394 28 C 0.076 3.924 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.164 0.836 33 H 0.417 0.583 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.017 0.983 39 H 0.077 0.923 40 H 0.269 0.731 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.242 -17.441 -1.521 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.196 6.196 3 C 0.097 3.903 4 C -0.265 4.265 5 C -0.107 4.107 6 C 0.376 3.624 7 O -0.416 6.416 8 N -0.334 5.334 9 C 0.027 3.973 10 H 0.098 0.902 11 C -0.160 4.160 12 C -0.175 4.175 13 C 0.026 3.974 14 N -0.318 5.318 15 C -0.477 4.477 16 H 0.078 0.922 17 C -0.224 4.224 18 N -0.556 5.556 19 Si 0.892 3.108 20 H -0.213 1.213 21 H -0.221 1.221 22 H -0.221 1.221 23 C 0.054 3.946 24 H 0.056 0.944 25 C -0.192 4.192 26 N -0.069 5.069 27 N -0.191 5.191 28 C -0.064 4.064 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.182 0.818 33 H 0.254 0.746 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.035 0.965 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.304 -15.890 -1.132 18.448 hybrid contribution 0.675 -1.646 -0.402 1.824 sum -8.630 -17.536 -1.534 19.604 Atomic orbital electron populations 1.23642 0.78130 1.05169 1.01547 1.86288 1.21504 1.21724 1.90039 1.19556 0.91059 0.78912 1.00760 1.20317 0.91829 0.95638 1.18752 1.22007 0.93064 0.92957 1.02722 1.16916 0.85674 0.82519 0.77318 1.90761 1.34093 1.65451 1.51277 1.45929 1.11231 1.04974 1.71300 1.21540 0.83961 0.95015 0.96832 0.90157 1.21784 0.98856 0.99815 0.95563 1.22025 0.98685 0.99072 0.97716 1.20962 0.98905 0.92585 0.84960 1.44217 1.28834 1.56358 1.02371 1.19924 1.05008 1.04201 1.18528 0.92152 1.25786 1.05648 0.91728 0.99188 1.70765 1.04922 1.36490 1.43427 0.83572 0.75578 0.75953 0.75725 1.21259 1.22085 1.22137 1.20624 0.94364 0.88729 0.90847 0.94377 1.21769 1.00214 1.01604 0.95576 1.77897 0.95114 1.10608 1.23282 1.49107 1.06974 1.02905 1.60124 1.22527 0.74651 1.05779 1.03458 0.91714 0.87419 0.91872 0.81844 0.74556 0.91741 0.92650 0.93213 0.92424 0.96532 0.90435 0.91953 0.91781 0.94185 0.92629 0.90346 0.88760 0.88068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.41 101.05 0.95 1.00 16 2 O -0.29 -3.01 10.57 -18.99 -0.20 -3.21 16 3 C 0.26 3.41 7.78 -16.72 -0.13 3.28 16 4 C -0.24 -3.54 10.59 -39.46 -0.42 -3.95 16 5 C 0.06 1.02 7.09 -82.91 -0.59 0.43 16 6 C 0.59 10.91 7.79 -12.39 -0.10 10.82 16 7 O -0.54 -10.89 16.56 5.30 0.09 -10.80 16 8 N -0.68 -12.59 3.44 -54.89 -0.19 -12.78 16 9 C 0.13 2.44 2.32 -68.04 -0.16 2.29 16 10 H 0.08 1.46 7.58 -51.93 -0.39 1.06 16 11 C -0.12 -2.18 5.58 -26.69 -0.15 -2.33 16 12 C -0.14 -2.62 5.93 -26.61 -0.16 -2.77 16 13 C 0.15 3.44 4.71 -3.71 -0.02 3.42 16 14 N -0.59 -13.84 2.49 -165.03 -0.41 -14.25 16 15 C -0.35 -9.00 8.47 -15.06 -0.13 -9.13 16 16 H 0.06 1.56 6.29 -52.49 -0.33 1.23 16 17 C -0.02 -0.57 4.70 -17.43 -0.08 -0.65 16 18 N -0.92 -26.63 12.47 55.49 0.69 -25.94 16 19 Si 1.06 24.57 29.98 -169.99 -5.10 19.47 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.16 3.26 3.18 -67.82 -0.22 3.04 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 C -0.13 -2.56 7.72 37.16 0.29 -2.27 16 26 N -0.24 -3.87 12.26 33.34 0.41 -3.46 16 27 N -0.39 -5.00 4.04 -68.18 -0.28 -5.28 16 28 C 0.08 0.58 9.59 59.85 0.57 1.15 16 29 H 0.06 0.28 5.91 -51.93 -0.31 -0.02 16 30 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.27 6.48 -51.93 -0.34 -0.07 16 32 H 0.16 2.31 8.06 -52.49 -0.42 1.88 16 33 H 0.42 8.19 7.44 -40.82 -0.30 7.88 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.17 7.53 -51.93 -0.39 0.77 16 38 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 39 H 0.08 1.98 6.43 -51.93 -0.33 1.65 16 40 H 0.27 7.91 6.73 -40.82 -0.27 7.63 16 41 H 0.06 1.31 7.63 -51.93 -0.40 0.91 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 1.08 6.36 -51.93 -0.33 0.75 16 44 H 0.08 0.46 7.60 -51.93 -0.39 0.06 16 45 H 0.09 0.44 4.65 -51.93 -0.24 0.20 16 46 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -32.23 361.51 -6.48 -38.71 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.62 Total: 7.77 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -0.33 Total: 4.32 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.23 Total: -61.71 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.11 Total: -14.01 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.10 Total: 19.47 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.23 -6.48 -38.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993576699.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.359 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds