Wall clock time and date at job start Tue Mar 31 2020 14:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35773 * 117.00050 * 2 1 4 4 C 1.35589 * 126.08535 * 182.05484 * 3 2 1 5 5 C 1.41060 * 107.79914 * 180.02562 * 4 3 2 6 6 C 1.47718 * 125.97736 * 179.97438 * 5 4 3 7 7 O 1.21570 * 120.00250 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99550 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99794 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.49818 * 324.92752 * 9 8 6 11 11 C 1.53038 * 109.50186 * 84.99727 * 9 8 6 12 12 C 1.53036 * 109.53887 * 181.34705 * 11 9 8 13 13 C 1.53196 * 109.31430 * 298.63300 * 12 11 9 14 14 N 1.46922 * 108.77189 * 54.63889 * 13 12 11 15 15 C 1.36938 * 120.63120 * 126.37122 * 14 13 12 16 16 H 1.07997 * 119.99857 * 210.17285 * 15 14 13 17 17 C 1.38811 * 120.00205 * 30.17158 * 15 14 13 18 18 N 1.31621 * 119.99730 * 15.55286 * 17 15 14 19 19 Si 1.86793 * 120.00022 * 195.55695 * 17 15 14 20 20 H 1.48504 * 109.47289 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47412 * 300.00043 * 19 17 15 22 22 H 1.48498 * 109.47194 * 60.00355 * 19 17 15 23 23 C 1.46923 * 118.73802 * 306.63636 * 14 13 12 24 24 H 1.08996 * 109.59158 * 293.57674 * 23 14 13 25 25 C 1.53004 * 109.58781 * 173.14698 * 23 14 13 26 26 N 1.31862 * 108.03638 * 0.24080 * 5 4 3 27 27 N 1.35839 * 126.08110 * 2.07928 * 3 2 1 28 28 C 1.46504 * 125.95516 * 359.97438 * 27 3 2 29 29 H 1.09002 * 109.47210 * 70.81722 * 1 2 3 30 30 H 1.09000 * 109.47212 * 190.81562 * 1 2 3 31 31 H 1.09000 * 109.47168 * 310.82299 * 1 2 3 32 32 H 1.08001 * 126.09572 * 0.03702 * 4 3 2 33 33 H 0.97002 * 120.00582 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.45743 * 61.32987 * 11 9 8 35 35 H 1.09001 * 109.44751 * 301.36487 * 11 9 8 36 36 H 1.09002 * 109.49726 * 178.68634 * 12 11 9 37 37 H 1.08997 * 109.52300 * 58.60696 * 12 11 9 38 38 H 1.08999 * 109.58860 * 294.85095 * 13 12 11 39 39 H 1.09000 * 109.70257 * 174.49109 * 13 12 11 40 40 H 0.96997 * 119.99643 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.46799 * 60.00269 * 25 23 14 42 42 H 1.09001 * 109.47062 * 180.02562 * 25 23 14 43 43 H 1.09003 * 109.47050 * 300.00534 * 25 23 14 44 44 H 1.08997 * 109.47198 * 82.50853 * 28 27 3 45 45 H 1.08996 * 109.47133 * 202.51450 * 28 27 3 46 46 H 1.08997 * 109.46502 * 322.50808 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3837 1.4242 -0.0393 5 6 3.5976 2.8183 -0.0228 6 6 4.9103 3.4952 -0.0530 7 8 5.9322 2.8382 -0.0958 8 7 4.9749 4.8413 -0.0321 9 6 6.2766 5.5127 -0.0626 10 1 7.0037 4.9220 0.4947 11 6 6.7418 5.6596 -1.5132 12 6 8.1169 6.3306 -1.5442 13 6 8.0126 7.7284 -0.9260 14 7 7.4297 7.6091 0.4173 15 6 8.0657 8.1470 1.5042 16 1 7.9527 7.6906 2.4765 17 6 8.8556 9.2788 1.3563 18 7 8.7588 10.0111 0.2669 19 14 10.0560 9.7625 2.7032 20 1 10.7751 10.9992 2.3048 21 1 9.3121 10.0066 3.9651 22 1 11.0357 8.6659 2.9104 23 6 6.1543 6.8964 0.5731 24 1 5.3607 7.4547 0.0767 25 6 5.8280 6.7482 2.0606 26 7 2.4211 3.4114 0.0301 27 7 1.4311 2.4206 0.0398 28 6 -0.0150 2.6503 0.0899 29 1 -0.3634 0.3377 -0.9706 30 1 -0.3633 -1.0094 0.1928 31 1 -0.3633 0.6718 0.7777 32 1 4.1491 0.6632 -0.0767 33 1 4.1595 5.3656 0.0024 34 1 6.0268 6.2711 -2.0636 35 1 6.8080 4.6743 -1.9746 36 1 8.4579 6.4137 -2.5762 37 1 8.8271 5.7324 -0.9734 38 1 7.3736 8.3560 -1.5473 39 1 9.0049 8.1740 -0.8555 40 1 9.3105 10.8022 0.1637 41 1 5.7491 7.7357 2.5153 42 1 4.8818 6.2190 2.1740 43 1 6.6207 6.1841 2.5521 44 1 -0.3621 2.5580 1.1189 45 1 -0.2369 3.6513 -0.2801 46 1 -0.5217 1.9125 -0.5322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993576707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:18 Heat of formation + Delta-G solvation = 47.170367 kcal Electronic energy + Delta-G solvation = -27752.869390 eV Core-core repulsion = 23874.405919 eV Total energy + Delta-G solvation = -3878.463471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.84621 -39.63453 -38.53004 -37.45876 -34.27350 -33.77041 -32.51560 -31.64745 -30.45193 -29.14430 -28.23820 -26.79912 -26.04945 -24.96870 -23.55519 -21.81621 -21.51565 -20.62889 -19.92553 -19.28687 -18.27235 -17.06968 -16.56367 -16.27634 -15.99789 -15.59091 -15.24996 -15.10979 -14.79783 -14.51701 -14.23657 -13.91080 -13.72983 -13.62506 -13.42655 -13.23767 -13.19569 -12.72326 -12.49311 -11.84686 -11.72701 -11.63382 -11.48229 -11.04345 -11.02368 -10.87253 -10.71412 -10.53099 -10.24785 -10.12995 -10.01100 -9.97238 -9.62219 -9.42923 -9.32589 -8.65190 -8.61451 -8.40855 -6.61937 -5.75755 -3.20155 1.23124 1.84868 2.03790 2.52383 3.38056 3.41843 3.47076 3.49684 3.51333 3.93599 4.27304 4.40520 4.52839 4.57824 4.64733 4.74938 4.98035 5.06946 5.23947 5.34773 5.46533 5.56985 5.64042 5.67243 5.70922 5.85719 6.02900 6.14921 6.19665 6.28085 6.40025 6.48848 6.59513 6.67503 6.76384 6.81036 6.89670 6.96935 7.04777 7.09795 7.17097 7.44299 7.70653 7.82148 7.85914 8.40219 8.49951 9.24329 9.86899 10.43985 11.33184 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027395 B = 0.002625 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.848314 B =10665.867890 C =10959.630055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.288 6.288 3 C 0.266 3.734 4 C -0.234 4.234 5 C 0.064 3.936 6 C 0.596 3.404 7 O -0.526 6.526 8 N -0.701 5.701 9 C 0.130 3.870 10 H 0.089 0.911 11 C -0.118 4.118 12 C -0.140 4.140 13 C 0.170 3.830 14 N -0.581 5.581 15 C -0.252 4.252 16 H 0.070 0.930 17 C 0.005 3.995 18 N -0.902 5.902 19 Si 0.902 3.098 20 H -0.291 1.291 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.168 3.832 24 H 0.028 0.972 25 C -0.137 4.137 26 N -0.249 5.249 27 N -0.395 5.395 28 C 0.079 3.921 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.166 0.834 33 H 0.403 0.597 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.019 0.981 39 H 0.086 0.914 40 H 0.254 0.746 41 H 0.064 0.936 42 H 0.039 0.961 43 H 0.054 0.946 44 H 0.078 0.922 45 H 0.099 0.901 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.696 -16.471 -2.245 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.194 6.194 3 C 0.100 3.900 4 C -0.264 4.264 5 C -0.103 4.103 6 C 0.378 3.622 7 O -0.400 6.400 8 N -0.351 5.351 9 C 0.024 3.976 10 H 0.107 0.893 11 C -0.156 4.156 12 C -0.180 4.180 13 C 0.044 3.956 14 N -0.305 5.305 15 C -0.381 4.381 16 H 0.087 0.913 17 C -0.194 4.194 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.217 1.217 21 H -0.209 1.209 22 H -0.210 1.210 23 C 0.060 3.940 24 H 0.046 0.954 25 C -0.195 4.195 26 N -0.080 5.080 27 N -0.193 5.193 28 C -0.062 4.062 29 H 0.081 0.919 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.183 0.817 33 H 0.237 0.763 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.037 0.963 39 H 0.105 0.895 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.118 0.882 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.491 -15.947 -2.253 25.284 hybrid contribution 0.105 -0.166 0.570 0.603 sum -19.386 -16.112 -1.683 25.264 Atomic orbital electron populations 1.23671 0.78068 1.05296 1.01607 1.86309 1.21556 1.21628 1.89936 1.19560 0.91071 0.78890 1.00491 1.20372 0.91938 0.95742 1.18370 1.22029 0.92968 0.93060 1.02277 1.16868 0.85655 0.82389 0.77289 1.90810 1.34070 1.65186 1.49895 1.46022 1.10857 1.05402 1.72796 1.21791 0.83038 0.95506 0.97227 0.89314 1.21773 0.98121 0.99830 0.95903 1.22181 0.95510 1.00409 0.99865 1.20826 0.99890 0.90488 0.84373 1.44007 1.18981 1.62906 1.04561 1.19114 1.24183 1.05531 0.89303 0.91280 1.25085 1.01445 0.95464 0.97419 1.70022 1.40825 1.15972 1.27799 0.86382 0.81403 0.77512 0.81526 1.21707 1.20906 1.20970 1.20467 0.90023 0.89261 0.94206 0.95424 1.21829 0.99310 1.01842 0.96505 1.77743 0.95118 1.10934 1.24210 1.49065 1.06908 1.02977 1.60311 1.22491 0.74720 1.05590 1.03390 0.91914 0.87384 0.91572 0.81676 0.76262 0.92662 0.93004 0.92967 0.92429 0.96258 0.89538 0.93632 0.91724 0.94223 0.92654 0.90323 0.88233 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.43 101.05 0.95 0.99 16 2 O -0.29 -2.63 10.57 -19.03 -0.20 -2.83 16 3 C 0.27 3.01 7.78 -16.72 -0.13 2.88 16 4 C -0.23 -3.18 10.59 -39.46 -0.42 -3.60 16 5 C 0.06 0.95 7.09 -82.91 -0.59 0.37 16 6 C 0.60 10.10 7.79 -12.39 -0.10 10.00 16 7 O -0.53 -10.46 16.56 5.30 0.09 -10.37 16 8 N -0.70 -11.37 4.57 -54.88 -0.25 -11.62 16 9 C 0.13 2.44 1.97 -68.03 -0.13 2.31 16 10 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 11 C -0.12 -2.18 5.46 -26.69 -0.15 -2.33 16 12 C -0.14 -2.80 6.08 -26.61 -0.16 -2.96 16 13 C 0.17 4.05 5.29 -3.71 -0.02 4.03 16 14 N -0.58 -14.33 2.99 -165.02 -0.49 -14.82 16 15 C -0.25 -6.75 8.56 -15.06 -0.13 -6.88 16 16 H 0.07 1.82 6.24 -52.49 -0.33 1.49 16 17 C 0.00 0.13 4.93 -17.43 -0.09 0.04 16 18 N -0.90 -25.94 11.26 55.49 0.62 -25.32 16 19 Si 0.90 21.70 29.58 -169.99 -5.03 16.67 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 23 C 0.17 3.48 3.02 -67.82 -0.20 3.27 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 25 C -0.14 -2.64 7.83 37.16 0.29 -2.35 16 26 N -0.25 -3.32 12.26 33.34 0.41 -2.91 16 27 N -0.40 -4.12 4.04 -68.19 -0.28 -4.39 16 28 C 0.08 0.40 9.55 59.85 0.57 0.97 16 29 H 0.06 0.17 6.76 -51.93 -0.35 -0.18 16 30 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.19 5.54 -51.93 -0.29 -0.10 16 32 H 0.17 2.15 8.06 -52.49 -0.42 1.73 16 33 H 0.40 5.86 8.30 -40.82 -0.34 5.52 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 2.30 6.17 -51.93 -0.32 1.98 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.06 1.32 7.63 -51.93 -0.40 0.92 16 42 H 0.04 0.65 7.79 -51.93 -0.40 0.24 16 43 H 0.05 1.11 7.44 -51.93 -0.39 0.72 16 44 H 0.08 0.28 7.56 -51.93 -0.39 -0.11 16 45 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.24 4.77 -51.93 -0.25 -0.01 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -33.13 365.81 -6.70 -39.83 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.79 Total: 3.52 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -0.30 Total: 6.74 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: 0.01 Total: -59.06 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.11 Total: -13.20 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.13 -6.70 -39.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993576707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.997 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds