Wall clock time and date at job start Tue Mar 31 2020 14:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35773 * 117.00050 * 2 1 4 4 C 1.35589 * 126.08535 * 182.05484 * 3 2 1 5 5 C 1.41060 * 107.79914 * 180.02562 * 4 3 2 6 6 C 1.47718 * 125.97736 * 179.97438 * 5 4 3 7 7 O 1.21570 * 120.00250 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99550 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99794 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.49818 * 324.92752 * 9 8 6 11 11 C 1.53038 * 109.50186 * 84.99727 * 9 8 6 12 12 C 1.53036 * 109.53887 * 181.34705 * 11 9 8 13 13 C 1.53196 * 109.31430 * 298.63300 * 12 11 9 14 14 N 1.46922 * 108.77189 * 54.63889 * 13 12 11 15 15 C 1.36938 * 120.63120 * 126.37122 * 14 13 12 16 16 H 1.07997 * 119.99857 * 210.17285 * 15 14 13 17 17 C 1.38811 * 120.00205 * 30.17158 * 15 14 13 18 18 N 1.31621 * 119.99730 * 15.55286 * 17 15 14 19 19 Si 1.86793 * 120.00022 * 195.55695 * 17 15 14 20 20 H 1.48504 * 109.47289 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47412 * 300.00043 * 19 17 15 22 22 H 1.48498 * 109.47194 * 60.00355 * 19 17 15 23 23 C 1.46923 * 118.73802 * 306.63636 * 14 13 12 24 24 H 1.08996 * 109.59158 * 293.57674 * 23 14 13 25 25 C 1.53004 * 109.58781 * 173.14698 * 23 14 13 26 26 N 1.31862 * 108.03638 * 0.24080 * 5 4 3 27 27 N 1.35839 * 126.08110 * 2.07928 * 3 2 1 28 28 C 1.46504 * 125.95516 * 359.97438 * 27 3 2 29 29 H 1.09002 * 109.47210 * 70.81722 * 1 2 3 30 30 H 1.09000 * 109.47212 * 190.81562 * 1 2 3 31 31 H 1.09000 * 109.47168 * 310.82299 * 1 2 3 32 32 H 1.08001 * 126.09572 * 0.03702 * 4 3 2 33 33 H 0.97002 * 120.00582 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.45743 * 61.32987 * 11 9 8 35 35 H 1.09001 * 109.44751 * 301.36487 * 11 9 8 36 36 H 1.09002 * 109.49726 * 178.68634 * 12 11 9 37 37 H 1.08997 * 109.52300 * 58.60696 * 12 11 9 38 38 H 1.08999 * 109.58860 * 294.85095 * 13 12 11 39 39 H 1.09000 * 109.70257 * 174.49109 * 13 12 11 40 40 H 0.96997 * 119.99643 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.46799 * 60.00269 * 25 23 14 42 42 H 1.09001 * 109.47062 * 180.02562 * 25 23 14 43 43 H 1.09003 * 109.47050 * 300.00534 * 25 23 14 44 44 H 1.08997 * 109.47198 * 82.50853 * 28 27 3 45 45 H 1.08996 * 109.47133 * 202.51450 * 28 27 3 46 46 H 1.08997 * 109.46502 * 322.50808 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3837 1.4242 -0.0393 5 6 3.5976 2.8183 -0.0228 6 6 4.9103 3.4952 -0.0530 7 8 5.9322 2.8382 -0.0958 8 7 4.9749 4.8413 -0.0321 9 6 6.2766 5.5127 -0.0626 10 1 7.0037 4.9220 0.4947 11 6 6.7418 5.6596 -1.5132 12 6 8.1169 6.3306 -1.5442 13 6 8.0126 7.7284 -0.9260 14 7 7.4297 7.6091 0.4173 15 6 8.0657 8.1470 1.5042 16 1 7.9527 7.6906 2.4765 17 6 8.8556 9.2788 1.3563 18 7 8.7588 10.0111 0.2669 19 14 10.0560 9.7625 2.7032 20 1 10.7751 10.9992 2.3048 21 1 9.3121 10.0066 3.9651 22 1 11.0357 8.6659 2.9104 23 6 6.1543 6.8964 0.5731 24 1 5.3607 7.4547 0.0767 25 6 5.8280 6.7482 2.0606 26 7 2.4211 3.4114 0.0301 27 7 1.4311 2.4206 0.0398 28 6 -0.0150 2.6503 0.0899 29 1 -0.3634 0.3377 -0.9706 30 1 -0.3633 -1.0094 0.1928 31 1 -0.3633 0.6718 0.7777 32 1 4.1491 0.6632 -0.0767 33 1 4.1595 5.3656 0.0024 34 1 6.0268 6.2711 -2.0636 35 1 6.8080 4.6743 -1.9746 36 1 8.4579 6.4137 -2.5762 37 1 8.8271 5.7324 -0.9734 38 1 7.3736 8.3560 -1.5473 39 1 9.0049 8.1740 -0.8555 40 1 9.3105 10.8022 0.1637 41 1 5.7491 7.7357 2.5153 42 1 4.8818 6.2190 2.1740 43 1 6.6207 6.1841 2.5521 44 1 -0.3621 2.5580 1.1189 45 1 -0.2369 3.6513 -0.2801 46 1 -0.5217 1.9125 -0.5322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993576707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:17 Heat of formation + Delta-G solvation = 23.023573 kcal Electronic energy + Delta-G solvation = -27753.916473 eV Core-core repulsion = 23874.405919 eV Total energy + Delta-G solvation = -3879.510554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.71986 -40.99213 -39.47041 -38.92883 -35.93137 -34.57243 -34.18610 -33.40533 -31.52953 -30.65492 -28.98623 -27.95461 -27.16759 -26.79286 -24.84219 -23.20488 -22.50975 -22.29643 -21.30356 -20.79176 -19.25213 -18.25461 -17.71173 -17.50110 -17.33609 -16.81394 -16.32827 -16.19911 -16.13830 -15.62600 -15.53939 -15.37628 -15.07030 -14.85427 -14.63087 -14.52117 -14.27950 -13.96879 -13.89349 -13.33164 -13.24322 -12.77430 -12.70370 -12.53381 -12.39151 -12.38286 -12.29038 -12.01388 -11.86856 -11.77420 -11.75918 -11.64320 -11.30097 -11.07991 -10.50167 -10.28892 -10.00378 -9.53457 -8.62584 -7.83686 -5.30026 0.20407 1.05506 1.09294 1.48583 1.51584 1.57289 1.77380 2.25404 2.28156 2.55815 3.09247 3.31953 3.64237 3.81744 3.92445 3.99948 4.03942 4.18332 4.23369 4.27424 4.31161 4.37542 4.38767 4.51952 4.55027 4.63395 4.67308 4.73703 4.77940 4.90686 4.93286 5.00242 5.06069 5.15488 5.20970 5.22457 5.29673 5.43974 5.47837 5.59208 5.73001 5.78326 6.11531 6.28751 6.44206 6.55711 7.09935 7.19021 7.88132 8.40719 9.23533 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027395 B = 0.002625 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.848314 B =10665.867890 C =10959.630055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 O -0.299 6.299 3 C 0.282 3.718 4 C -0.264 4.264 5 C 0.045 3.955 6 C 0.599 3.401 7 O -0.561 6.561 8 N -0.691 5.691 9 C 0.145 3.855 10 H 0.065 0.935 11 C -0.111 4.111 12 C -0.129 4.129 13 C 0.176 3.824 14 N -0.599 5.599 15 C -0.255 4.255 16 H 0.071 0.929 17 C -0.047 4.047 18 N -0.933 5.933 19 Si 0.962 3.038 20 H -0.295 1.295 21 H -0.275 1.275 22 H -0.282 1.282 23 C 0.166 3.834 24 H 0.032 0.968 25 C -0.128 4.128 26 N -0.257 5.257 27 N -0.383 5.383 28 C 0.062 3.938 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.083 0.917 32 H 0.159 0.841 33 H 0.413 0.587 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.004 0.996 39 H 0.055 0.945 40 H 0.249 0.751 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.043 0.957 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.603 -17.945 -1.986 28.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.205 6.205 3 C 0.113 3.887 4 C -0.294 4.294 5 C -0.121 4.121 6 C 0.383 3.617 7 O -0.438 6.438 8 N -0.342 5.342 9 C 0.039 3.961 10 H 0.083 0.917 11 C -0.149 4.149 12 C -0.168 4.168 13 C 0.050 3.950 14 N -0.323 5.323 15 C -0.385 4.385 16 H 0.089 0.911 17 C -0.243 4.243 18 N -0.579 5.579 19 Si 0.790 3.210 20 H -0.221 1.221 21 H -0.201 1.201 22 H -0.208 1.208 23 C 0.059 3.941 24 H 0.049 0.951 25 C -0.186 4.186 26 N -0.090 5.090 27 N -0.181 5.181 28 C -0.076 4.076 29 H 0.099 0.901 30 H 0.148 0.852 31 H 0.101 0.899 32 H 0.176 0.824 33 H 0.250 0.750 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.022 0.978 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.119 0.881 45 H 0.125 0.875 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.463 -17.440 -1.985 28.507 hybrid contribution 0.776 0.179 0.484 0.932 sum -21.687 -17.261 -1.501 27.758 Atomic orbital electron populations 1.24127 0.75230 1.07453 1.03293 1.86336 1.24486 1.20236 1.89474 1.19419 0.90634 0.79922 0.98680 1.20413 0.93363 0.95292 1.20331 1.21583 0.92373 0.93463 1.04658 1.17119 0.86266 0.82136 0.76155 1.90783 1.35650 1.65868 1.51482 1.45795 1.10189 1.05422 1.72744 1.21355 0.83811 0.94014 0.96910 0.91686 1.21703 0.97320 1.00076 0.95823 1.22017 0.96417 0.97776 1.00606 1.20640 0.97731 0.92232 0.84362 1.44242 1.20562 1.63198 1.04271 1.19398 1.23915 1.05158 0.90004 0.91097 1.25779 1.03218 0.95819 0.99487 1.70163 1.41759 1.16384 1.29551 0.85429 0.79365 0.76785 0.79393 1.22117 1.20055 1.20812 1.20591 0.88375 0.89654 0.95455 0.95056 1.21733 1.00438 1.01227 0.95157 1.77644 0.95131 1.11959 1.24244 1.49418 1.08212 1.02119 1.58352 1.23045 0.71731 1.07176 1.05639 0.90144 0.85169 0.89905 0.82372 0.75007 0.91603 0.92356 0.90708 0.93428 0.97752 0.92703 0.94203 0.93060 0.91198 0.93786 0.88143 0.87534 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.03 9.43 113.37 1.07 1.04 16 2 O -0.30 -4.69 10.57 -91.01 -0.96 -5.65 16 3 C 0.28 5.83 7.78 83.46 0.65 6.48 16 4 C -0.26 -7.07 10.59 22.35 0.24 -6.84 16 5 C 0.05 1.32 7.09 42.34 0.30 1.62 16 6 C 0.60 20.26 7.79 86.75 0.68 20.94 16 7 O -0.56 -22.73 16.56 -3.94 -0.07 -22.79 16 8 N -0.69 -21.94 4.57 -445.82 -2.04 -23.98 16 9 C 0.15 5.44 1.97 44.93 0.09 5.52 16 10 H 0.06 2.79 7.58 -2.39 -0.02 2.77 16 11 C -0.11 -4.03 5.46 30.62 0.17 -3.86 16 12 C -0.13 -5.14 6.08 30.67 0.19 -4.96 16 13 C 0.18 8.59 5.29 86.36 0.46 9.04 16 14 N -0.60 -29.99 2.99 -676.02 -2.02 -32.01 16 15 C -0.25 -13.86 8.56 84.03 0.72 -13.14 16 16 H 0.07 3.76 6.24 -2.91 -0.02 3.75 16 17 C -0.05 -2.65 4.93 84.86 0.42 -2.23 16 18 N -0.93 -55.01 11.26 21.65 0.24 -54.76 16 19 Si 0.96 45.29 29.58 68.60 2.03 47.31 16 20 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 23 C 0.17 6.84 3.02 44.84 0.14 6.97 16 24 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 25 C -0.13 -4.86 7.83 71.98 0.56 -4.30 16 26 N -0.26 -6.42 12.26 -48.43 -0.59 -7.01 16 27 N -0.38 -6.94 4.04 -480.57 -1.94 -8.88 16 28 C 0.06 0.39 9.55 127.77 1.22 1.61 16 29 H 0.08 0.08 6.76 -2.39 -0.02 0.06 16 30 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.08 0.09 5.54 -2.39 -0.01 0.08 16 32 H 0.16 4.27 8.06 -2.91 -0.02 4.25 16 33 H 0.41 11.45 8.30 -92.71 -0.77 10.68 16 34 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.05 3.02 6.17 -2.39 -0.01 3.00 16 40 H 0.25 14.31 8.31 -92.71 -0.77 13.53 16 41 H 0.05 2.06 7.63 -2.39 -0.02 2.05 16 42 H 0.07 2.19 7.79 -2.39 -0.02 2.17 16 43 H 0.04 1.75 7.44 -2.39 -0.02 1.73 16 44 H 0.10 0.27 7.56 -2.39 -0.02 0.25 16 45 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.12 0.05 4.77 -2.39 -0.01 0.03 16 Total: -1.00 -73.73 365.81 1.78 -71.95 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.24 Total: 17.92 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 6.89 Total: 17.90 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -6.35 Total: -126.64 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -1.03 Total: -28.44 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -73.73 1.78 -71.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993576707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.972 kcal (2) G-P(sol) polarization free energy of solvation -73.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds