Wall clock time and date at job start Tue Mar 31 2020 14:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35761 * 117.00485 * 2 1 4 4 C 1.35595 * 126.08639 * 178.05471 * 3 2 1 5 5 C 1.41055 * 107.79932 * 180.02562 * 4 3 2 6 6 C 1.47720 * 125.98030 * 180.02562 * 5 4 3 7 7 O 1.21576 * 120.00266 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00244 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00305 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.49575 * 325.06850 * 9 8 6 11 11 C 1.53049 * 109.49111 * 85.16135 * 9 8 6 12 12 C 1.53037 * 109.53805 * 58.58831 * 11 9 8 13 13 C 1.53196 * 109.31226 * 61.36447 * 12 11 9 14 14 N 1.46919 * 108.77243 * 305.35936 * 13 12 11 15 15 C 1.36942 * 120.63270 * 233.63000 * 14 13 12 16 16 H 1.07993 * 119.99970 * 149.10315 * 15 14 13 17 17 C 1.38820 * 119.99663 * 329.10601 * 15 14 13 18 18 N 1.31621 * 119.99549 * 161.25132 * 17 15 14 19 19 Si 1.86798 * 119.99997 * 341.24828 * 17 15 14 20 20 H 1.48497 * 109.47270 * 86.63039 * 19 17 15 21 21 H 1.48505 * 109.46617 * 206.62591 * 19 17 15 22 22 H 1.48501 * 109.47108 * 326.62463 * 19 17 15 23 23 C 1.46926 * 118.74060 * 53.61510 * 14 13 12 24 24 H 1.09000 * 109.70555 * 66.24538 * 23 14 13 25 25 C 1.52998 * 109.58938 * 186.59940 * 23 14 13 26 26 N 1.31857 * 108.03891 * 0.02562 * 5 4 3 27 27 N 1.35843 * 126.08496 * 358.10020 * 3 2 1 28 28 C 1.46497 * 125.94855 * 0.22548 * 27 3 2 29 29 H 1.08995 * 109.47945 * 172.56108 * 1 2 3 30 30 H 1.09001 * 109.47218 * 292.56546 * 1 2 3 31 31 H 1.09005 * 109.46628 * 52.56146 * 1 2 3 32 32 H 1.07999 * 126.09870 * 0.06288 * 4 3 2 33 33 H 0.97006 * 119.99875 * 359.97438 * 8 6 5 34 34 H 1.08999 * 109.45325 * 178.60818 * 11 9 8 35 35 H 1.08996 * 109.46118 * 298.56056 * 11 9 8 36 36 H 1.08993 * 109.50152 * 301.40867 * 12 11 9 37 37 H 1.08999 * 109.52315 * 181.32549 * 12 11 9 38 38 H 1.09002 * 109.58300 * 185.57443 * 13 12 11 39 39 H 1.09000 * 109.59000 * 65.15090 * 13 12 11 40 40 H 0.97001 * 119.99803 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.47135 * 179.28540 * 25 23 14 42 42 H 1.09001 * 109.47200 * 299.29229 * 25 23 14 43 43 H 1.09003 * 109.46782 * 59.28599 * 25 23 14 44 44 H 1.09001 * 109.47459 * 276.61017 * 28 27 3 45 45 H 1.09009 * 109.47033 * 36.61173 * 28 27 3 46 46 H 1.09000 * 109.47177 * 156.60641 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.3838 1.4239 0.0372 5 6 3.5978 2.8180 0.0228 6 6 4.9105 3.4949 0.0517 7 8 5.9326 2.8378 0.0924 8 7 4.9752 4.8410 0.0331 9 6 6.2771 5.5123 0.0623 10 1 6.9679 4.9394 0.6808 11 6 6.8302 5.6161 -1.3609 12 6 5.8446 6.3919 -2.2377 13 6 5.6767 7.8087 -1.6797 14 7 5.2843 7.7169 -0.2668 15 6 4.1665 8.3625 0.1902 16 1 3.5999 7.9464 1.0100 17 6 3.7617 9.5518 -0.4003 18 7 2.5282 9.9812 -0.2368 19 14 4.9674 10.5427 -1.4268 20 1 4.9497 10.0473 -2.8266 21 1 4.5765 11.9752 -1.4038 22 1 6.3343 10.3935 -0.8661 23 6 6.1139 6.9191 0.6464 24 1 7.0931 7.3852 0.7555 25 6 5.4327 6.8310 2.0135 26 7 2.4211 3.4113 -0.0211 27 7 1.4312 2.4206 -0.0364 28 6 -0.0151 2.6505 -0.0779 29 1 -0.3635 -1.0189 -0.1330 30 1 -0.3634 0.3944 0.9490 31 1 -0.3633 0.6248 -0.8160 32 1 4.1494 0.6629 0.0711 33 1 4.1598 5.3654 0.0002 34 1 7.7872 6.1376 -1.3413 35 1 6.9705 4.6156 -1.7699 36 1 4.8802 5.8842 -2.2379 37 1 6.2277 6.4454 -3.2568 38 1 4.9029 8.3329 -2.2406 39 1 6.6200 8.3484 -1.7627 40 1 2.2452 10.8121 -0.6498 41 1 6.0435 6.2282 2.6856 42 1 5.3175 7.8328 2.4273 43 1 4.4517 6.3692 1.9015 44 1 -0.3659 2.5735 -1.1071 45 1 -0.5195 1.9032 0.5348 46 1 -0.2360 3.6458 0.3078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993576712.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:21 Heat of formation + Delta-G solvation = 53.430329 kcal Electronic energy + Delta-G solvation = -28616.018062 eV Core-core repulsion = 24737.826044 eV Total energy + Delta-G solvation = -3878.192019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.66654 -39.70113 -38.47161 -37.54887 -33.99879 -33.56986 -32.59122 -31.72506 -30.53431 -29.69881 -28.08892 -26.74593 -26.20529 -24.86532 -23.53965 -22.18802 -21.53933 -20.82509 -19.83141 -18.82891 -18.25385 -16.91135 -16.50506 -16.36063 -15.83673 -15.40326 -15.39183 -15.03656 -14.97560 -14.52082 -14.17403 -13.99175 -13.72912 -13.60612 -13.45816 -13.11456 -13.08019 -12.99793 -12.47488 -12.08705 -11.68619 -11.67319 -11.51888 -11.49998 -11.20367 -10.79041 -10.77371 -10.60637 -10.48547 -10.21870 -9.97736 -9.81970 -9.46748 -9.45395 -9.23715 -8.60332 -8.50858 -8.47823 -6.91983 -5.94345 -3.34139 1.43327 2.05418 2.18759 2.67622 3.33372 3.49507 3.52714 3.57550 3.65440 4.12466 4.44848 4.54302 4.55020 4.79035 4.85892 4.89513 4.91931 5.21284 5.24276 5.26302 5.42218 5.45069 5.52419 5.59061 5.76892 5.79905 5.87640 6.01898 6.11535 6.14532 6.31879 6.34746 6.37110 6.41353 6.50463 6.57381 6.75489 6.80323 6.89152 6.99246 7.08238 7.14258 7.34040 7.99135 8.03762 8.35546 8.56161 8.94439 9.72924 10.10714 11.21018 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.003895 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.796585 B = 7187.419520 C = 8184.067500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.290 6.290 3 C 0.263 3.737 4 C -0.236 4.236 5 C 0.058 3.942 6 C 0.595 3.405 7 O -0.540 6.540 8 N -0.685 5.685 9 C 0.132 3.868 10 H 0.084 0.916 11 C -0.123 4.123 12 C -0.133 4.133 13 C 0.124 3.876 14 N -0.602 5.602 15 C -0.260 4.260 16 H 0.091 0.909 17 C 0.028 3.972 18 N -0.908 5.908 19 Si 0.884 3.116 20 H -0.287 1.287 21 H -0.306 1.306 22 H -0.273 1.273 23 C 0.163 3.837 24 H 0.046 0.954 25 C -0.137 4.137 26 N -0.235 5.235 27 N -0.393 5.393 28 C 0.076 3.924 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.164 0.836 33 H 0.418 0.582 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.023 0.977 40 H 0.262 0.738 41 H 0.042 0.958 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.715 -16.984 0.032 17.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.196 6.196 3 C 0.096 3.904 4 C -0.266 4.266 5 C -0.110 4.110 6 C 0.378 3.622 7 O -0.416 6.416 8 N -0.336 5.336 9 C 0.026 3.974 10 H 0.102 0.898 11 C -0.161 4.161 12 C -0.173 4.173 13 C -0.001 4.001 14 N -0.327 5.327 15 C -0.389 4.389 16 H 0.109 0.891 17 C -0.171 4.171 18 N -0.551 5.551 19 Si 0.714 3.286 20 H -0.215 1.215 21 H -0.234 1.234 22 H -0.198 1.198 23 C 0.056 3.944 24 H 0.064 0.936 25 C -0.195 4.195 26 N -0.065 5.065 27 N -0.190 5.190 28 C -0.065 4.065 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.181 0.819 33 H 0.256 0.744 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.773 -16.471 0.022 16.897 hybrid contribution 0.119 0.253 -0.773 0.822 sum -3.654 -16.218 -0.751 16.641 Atomic orbital electron populations 1.23643 0.78134 1.05146 1.01577 1.86283 1.21502 1.21753 1.90058 1.19560 0.91079 0.78929 1.00794 1.20305 0.91830 0.95625 1.18818 1.21982 0.93087 0.92942 1.02961 1.16898 0.85674 0.82463 0.77186 1.90759 1.34137 1.65458 1.51258 1.45926 1.11207 1.05072 1.71416 1.21596 0.84045 0.94904 0.96893 0.89829 1.21795 0.98656 1.00071 0.95603 1.21961 0.99472 0.98220 0.97602 1.21400 0.98347 0.94384 0.85946 1.44486 1.28381 1.57508 1.02351 1.18890 0.99579 1.01857 1.18526 0.89142 1.25343 0.96139 0.96891 0.98720 1.69813 1.15544 1.23117 1.46628 0.86984 0.82687 0.78979 0.79914 1.21478 1.23412 1.19822 1.20756 0.94643 0.88549 0.90433 0.93636 1.21802 1.00378 1.02071 0.95212 1.77932 0.95083 1.10552 1.22956 1.49115 1.07035 1.02883 1.59976 1.22536 0.74599 1.05852 1.03467 0.87447 0.91865 0.91689 0.81885 0.74361 0.91607 0.92313 0.91813 0.92939 0.90769 0.95889 0.92854 0.93911 0.91474 0.92271 0.90341 0.88785 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.40 101.05 0.95 1.01 16 2 O -0.29 -3.06 10.57 -18.99 -0.20 -3.26 16 3 C 0.26 3.44 7.78 -16.72 -0.13 3.31 16 4 C -0.24 -3.54 10.59 -39.46 -0.42 -3.96 16 5 C 0.06 0.98 7.09 -82.91 -0.59 0.39 16 6 C 0.60 10.71 7.79 -12.39 -0.10 10.61 16 7 O -0.54 -10.61 16.56 5.30 0.09 -10.52 16 8 N -0.68 -12.23 3.46 -54.67 -0.19 -12.42 16 9 C 0.13 2.29 2.33 -67.81 -0.16 2.14 16 10 H 0.08 1.42 7.58 -51.93 -0.39 1.02 16 11 C -0.12 -2.06 5.58 -26.69 -0.15 -2.21 16 12 C -0.13 -2.42 5.93 -26.61 -0.16 -2.57 16 13 C 0.12 2.65 4.20 -3.71 -0.02 2.63 16 14 N -0.60 -13.44 2.38 -164.78 -0.39 -13.83 16 15 C -0.26 -6.78 9.00 -15.05 -0.14 -6.92 16 16 H 0.09 2.50 6.45 -52.49 -0.34 2.16 16 17 C 0.03 0.79 5.24 -17.43 -0.09 0.69 16 18 N -0.91 -26.93 13.97 55.49 0.78 -26.15 16 19 Si 0.88 22.00 24.39 -169.99 -4.15 17.86 16 20 H -0.29 -6.92 6.41 56.52 0.36 -6.56 16 21 H -0.31 -7.84 7.11 56.52 0.40 -7.43 16 22 H -0.27 -6.74 6.98 56.52 0.39 -6.35 16 23 C 0.16 3.09 3.20 -67.60 -0.22 2.88 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 C -0.14 -2.50 7.73 37.16 0.29 -2.21 16 26 N -0.23 -3.86 12.26 33.34 0.41 -3.46 16 27 N -0.39 -5.10 4.03 -68.19 -0.28 -5.38 16 28 C 0.08 0.61 9.59 59.85 0.57 1.19 16 29 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.28 6.50 -51.93 -0.34 -0.06 16 31 H 0.06 0.30 5.90 -51.93 -0.31 0.00 16 32 H 0.16 2.29 8.06 -52.49 -0.42 1.86 16 33 H 0.42 8.08 7.47 -40.82 -0.30 7.78 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 1.22 7.53 -51.93 -0.39 0.83 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.74 4.69 -51.93 -0.24 1.49 16 39 H 0.02 0.49 7.22 -51.93 -0.37 0.11 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.31 7.68 -51.93 -0.40 0.91 16 43 H 0.06 1.13 6.37 -51.93 -0.33 0.80 16 44 H 0.08 0.51 7.62 -51.93 -0.40 0.11 16 45 H 0.09 0.47 4.63 -51.92 -0.24 0.23 16 46 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 356.56 15.07 5.37 5.37 Total: -1.00 -32.62 356.56 -5.52 -38.14 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.62 Total: 6.68 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -0.34 Total: 6.97 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 0.33 Total: -61.24 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.11 Total: -13.78 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.15 Total: 17.86 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.62 -5.52 -38.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993576712.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.570 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds