Wall clock time and date at job start Tue Mar 31 2020 14:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35761 * 117.00485 * 2 1 4 4 C 1.35595 * 126.08639 * 178.05471 * 3 2 1 5 5 C 1.41055 * 107.79932 * 180.02562 * 4 3 2 6 6 C 1.47720 * 125.98030 * 180.02562 * 5 4 3 7 7 O 1.21576 * 120.00266 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00244 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00305 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.49575 * 325.06850 * 9 8 6 11 11 C 1.53049 * 109.49111 * 85.16135 * 9 8 6 12 12 C 1.53037 * 109.53805 * 58.58831 * 11 9 8 13 13 C 1.53196 * 109.31226 * 61.36447 * 12 11 9 14 14 N 1.46919 * 108.77243 * 305.35936 * 13 12 11 15 15 C 1.36942 * 120.63270 * 233.63000 * 14 13 12 16 16 H 1.07993 * 119.99970 * 149.10315 * 15 14 13 17 17 C 1.38820 * 119.99663 * 329.10601 * 15 14 13 18 18 N 1.31621 * 119.99549 * 161.25132 * 17 15 14 19 19 Si 1.86798 * 119.99997 * 341.24828 * 17 15 14 20 20 H 1.48497 * 109.47270 * 86.63039 * 19 17 15 21 21 H 1.48505 * 109.46617 * 206.62591 * 19 17 15 22 22 H 1.48501 * 109.47108 * 326.62463 * 19 17 15 23 23 C 1.46926 * 118.74060 * 53.61510 * 14 13 12 24 24 H 1.09000 * 109.70555 * 66.24538 * 23 14 13 25 25 C 1.52998 * 109.58938 * 186.59940 * 23 14 13 26 26 N 1.31857 * 108.03891 * 0.02562 * 5 4 3 27 27 N 1.35843 * 126.08496 * 358.10020 * 3 2 1 28 28 C 1.46497 * 125.94855 * 0.22548 * 27 3 2 29 29 H 1.08995 * 109.47945 * 172.56108 * 1 2 3 30 30 H 1.09001 * 109.47218 * 292.56546 * 1 2 3 31 31 H 1.09005 * 109.46628 * 52.56146 * 1 2 3 32 32 H 1.07999 * 126.09870 * 0.06288 * 4 3 2 33 33 H 0.97006 * 119.99875 * 359.97438 * 8 6 5 34 34 H 1.08999 * 109.45325 * 178.60818 * 11 9 8 35 35 H 1.08996 * 109.46118 * 298.56056 * 11 9 8 36 36 H 1.08993 * 109.50152 * 301.40867 * 12 11 9 37 37 H 1.08999 * 109.52315 * 181.32549 * 12 11 9 38 38 H 1.09002 * 109.58300 * 185.57443 * 13 12 11 39 39 H 1.09000 * 109.59000 * 65.15090 * 13 12 11 40 40 H 0.97001 * 119.99803 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.47135 * 179.28540 * 25 23 14 42 42 H 1.09001 * 109.47200 * 299.29229 * 25 23 14 43 43 H 1.09003 * 109.46782 * 59.28599 * 25 23 14 44 44 H 1.09001 * 109.47459 * 276.61017 * 28 27 3 45 45 H 1.09009 * 109.47033 * 36.61173 * 28 27 3 46 46 H 1.09000 * 109.47177 * 156.60641 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.3838 1.4239 0.0372 5 6 3.5978 2.8180 0.0228 6 6 4.9105 3.4949 0.0517 7 8 5.9326 2.8378 0.0924 8 7 4.9752 4.8410 0.0331 9 6 6.2771 5.5123 0.0623 10 1 6.9679 4.9394 0.6808 11 6 6.8302 5.6161 -1.3609 12 6 5.8446 6.3919 -2.2377 13 6 5.6767 7.8087 -1.6797 14 7 5.2843 7.7169 -0.2668 15 6 4.1665 8.3625 0.1902 16 1 3.5999 7.9464 1.0100 17 6 3.7617 9.5518 -0.4003 18 7 2.5282 9.9812 -0.2368 19 14 4.9674 10.5427 -1.4268 20 1 4.9497 10.0473 -2.8266 21 1 4.5765 11.9752 -1.4038 22 1 6.3343 10.3935 -0.8661 23 6 6.1139 6.9191 0.6464 24 1 7.0931 7.3852 0.7555 25 6 5.4327 6.8310 2.0135 26 7 2.4211 3.4113 -0.0211 27 7 1.4312 2.4206 -0.0364 28 6 -0.0151 2.6505 -0.0779 29 1 -0.3635 -1.0189 -0.1330 30 1 -0.3634 0.3944 0.9490 31 1 -0.3633 0.6248 -0.8160 32 1 4.1494 0.6629 0.0711 33 1 4.1598 5.3654 0.0002 34 1 7.7872 6.1376 -1.3413 35 1 6.9705 4.6156 -1.7699 36 1 4.8802 5.8842 -2.2379 37 1 6.2277 6.4454 -3.2568 38 1 4.9029 8.3329 -2.2406 39 1 6.6200 8.3484 -1.7627 40 1 2.2452 10.8121 -0.6498 41 1 6.0435 6.2282 2.6856 42 1 5.3175 7.8328 2.4273 43 1 4.4517 6.3692 1.9015 44 1 -0.3659 2.5735 -1.1071 45 1 -0.5195 1.9032 0.5348 46 1 -0.2360 3.6458 0.3078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993576712.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:20 Heat of formation + Delta-G solvation = 29.317965 kcal Electronic energy + Delta-G solvation = -28617.063653 eV Core-core repulsion = 24737.826044 eV Total energy + Delta-G solvation = -3879.237609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.70513 -41.10212 -39.52682 -38.92386 -35.66280 -34.54537 -34.15823 -33.47638 -31.97328 -30.90840 -28.99403 -28.06071 -27.16687 -26.65098 -24.88672 -23.75150 -22.51029 -22.35471 -21.17998 -20.35595 -19.28642 -18.36806 -17.72322 -17.58010 -17.16840 -17.04779 -16.38661 -16.29697 -16.20616 -15.76298 -15.46079 -15.27933 -15.20440 -14.86493 -14.66975 -14.50253 -14.26221 -13.98338 -13.92432 -13.81977 -13.38075 -13.16054 -12.71957 -12.52010 -12.39192 -12.29306 -12.26322 -12.11572 -11.90826 -11.77966 -11.63363 -11.39374 -11.21353 -11.17168 -10.56863 -10.27211 -9.93729 -9.53108 -8.80718 -8.07317 -5.42178 0.24949 1.07510 1.11314 1.35193 1.46170 1.53976 1.83287 2.32390 2.36543 2.49201 3.12083 3.15424 3.32205 3.79997 3.93731 4.01494 4.01823 4.10140 4.17233 4.26772 4.27077 4.30450 4.37285 4.50218 4.52485 4.57893 4.63057 4.68460 4.72597 4.85438 4.89456 4.94466 5.01028 5.02450 5.08932 5.20000 5.24945 5.29763 5.39073 5.47528 5.62098 5.98261 6.16454 6.26319 6.30097 6.61598 6.98888 7.14420 7.70363 8.11086 9.11720 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.003895 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.796585 B = 7187.419520 C = 8184.067500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.296 6.296 3 C 0.279 3.721 4 C -0.259 4.259 5 C 0.039 3.961 6 C 0.597 3.403 7 O -0.560 6.560 8 N -0.685 5.685 9 C 0.135 3.865 10 H 0.095 0.905 11 C -0.117 4.117 12 C -0.124 4.124 13 C 0.120 3.880 14 N -0.612 5.612 15 C -0.232 4.232 16 H 0.066 0.934 17 C -0.029 4.029 18 N -0.957 5.957 19 Si 0.939 3.061 20 H -0.275 1.275 21 H -0.319 1.319 22 H -0.265 1.265 23 C 0.161 3.839 24 H 0.062 0.938 25 C -0.130 4.130 26 N -0.267 5.267 27 N -0.385 5.385 28 C 0.061 3.939 29 H 0.135 0.865 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.165 0.835 33 H 0.410 0.590 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.034 0.966 40 H 0.257 0.743 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.042 0.958 44 H 0.099 0.901 45 H 0.130 0.870 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 -18.815 -0.524 19.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.202 6.202 3 C 0.111 3.889 4 C -0.289 4.289 5 C -0.127 4.127 6 C 0.381 3.619 7 O -0.438 6.438 8 N -0.335 5.335 9 C 0.029 3.971 10 H 0.112 0.888 11 C -0.155 4.155 12 C -0.163 4.163 13 C -0.004 4.004 14 N -0.337 5.337 15 C -0.362 4.362 16 H 0.084 0.916 17 C -0.224 4.224 18 N -0.603 5.603 19 Si 0.769 3.231 20 H -0.202 1.202 21 H -0.249 1.249 22 H -0.190 1.190 23 C 0.055 3.945 24 H 0.080 0.920 25 C -0.188 4.188 26 N -0.099 5.099 27 N -0.183 5.183 28 C -0.077 4.077 29 H 0.153 0.847 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.183 0.817 33 H 0.247 0.753 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.117 0.883 45 H 0.148 0.852 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.229 -18.339 -0.542 18.629 hybrid contribution -0.193 0.644 -0.541 0.863 sum -3.422 -17.695 -1.083 18.055 Atomic orbital electron populations 1.24088 0.75371 1.07501 1.02980 1.86319 1.24323 1.20039 1.89568 1.19492 0.90765 0.79800 0.98807 1.20401 0.93154 0.95019 1.20347 1.21836 0.92725 0.93695 1.04453 1.17046 0.86090 0.82255 0.76477 1.90730 1.34961 1.65734 1.52334 1.45934 1.10985 1.05109 1.71423 1.21585 0.84090 0.93743 0.97672 0.88751 1.21768 0.98981 1.00255 0.94497 1.21843 0.99348 0.96022 0.99095 1.21435 0.97783 0.96245 0.84982 1.44575 1.28076 1.57408 1.03646 1.18809 0.99805 1.01051 1.16528 0.91644 1.25874 0.97267 0.98277 1.00987 1.69939 1.17340 1.23716 1.49312 0.86071 0.80902 0.76770 0.79348 1.20228 1.24855 1.18981 1.20947 0.94616 0.88951 0.89993 0.92005 1.21720 1.00124 1.01329 0.95589 1.77841 0.95743 1.12207 1.24120 1.49416 1.08097 1.02312 1.58515 1.23032 0.72174 1.06852 1.05638 0.84738 0.90324 0.90374 0.81716 0.75323 0.89548 0.91934 0.93443 0.90543 0.93168 0.94779 0.93358 0.91059 0.93248 0.93893 0.88273 0.85240 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 9.40 113.37 1.07 1.02 16 2 O -0.30 -5.58 10.57 -90.87 -0.96 -6.54 16 3 C 0.28 6.97 7.78 83.46 0.65 7.62 16 4 C -0.26 -7.75 10.59 22.35 0.24 -7.51 16 5 C 0.04 1.33 7.09 42.34 0.30 1.63 16 6 C 0.60 21.52 7.79 86.75 0.68 22.20 16 7 O -0.56 -21.78 16.56 -3.95 -0.07 -21.84 16 8 N -0.68 -24.32 3.46 -445.14 -1.54 -25.86 16 9 C 0.13 4.47 2.33 45.07 0.10 4.57 16 10 H 0.09 2.99 7.58 -2.39 -0.02 2.97 16 11 C -0.12 -3.61 5.58 30.62 0.17 -3.43 16 12 C -0.12 -4.25 5.93 30.67 0.18 -4.07 16 13 C 0.12 4.92 4.20 86.37 0.36 5.28 16 14 N -0.61 -26.87 2.38 -675.24 -1.60 -28.48 16 15 C -0.23 -12.30 9.00 84.03 0.76 -11.55 16 16 H 0.07 3.76 6.45 -2.91 -0.02 3.74 16 17 C -0.03 -1.66 5.24 84.86 0.44 -1.22 16 18 N -0.96 -58.57 13.97 21.65 0.30 -58.27 16 19 Si 0.94 45.76 24.39 68.60 1.67 47.44 16 20 H -0.28 -12.76 6.41 99.48 0.64 -12.12 16 21 H -0.32 -16.14 7.11 99.48 0.71 -15.43 16 22 H -0.27 -12.41 6.98 99.48 0.69 -11.72 16 23 C 0.16 5.86 3.20 44.97 0.14 6.00 16 24 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 25 C -0.13 -4.68 7.73 71.98 0.56 -4.12 16 26 N -0.27 -8.87 12.26 -48.43 -0.59 -9.46 16 27 N -0.39 -9.59 4.03 -480.57 -1.94 -11.53 16 28 C 0.06 0.86 9.59 127.77 1.23 2.09 16 29 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.08 0.40 6.50 -2.39 -0.02 0.38 16 31 H 0.08 0.44 5.90 -2.38 -0.01 0.43 16 32 H 0.17 4.66 8.06 -2.91 -0.02 4.64 16 33 H 0.41 16.15 7.47 -92.70 -0.69 15.45 16 34 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.78 7.53 -2.39 -0.02 1.76 16 37 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.05 2.30 4.69 -2.39 -0.01 2.29 16 39 H 0.03 1.34 7.22 -2.39 -0.02 1.32 16 40 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.05 1.93 7.68 -2.39 -0.02 1.91 16 43 H 0.04 1.67 6.37 -2.39 -0.02 1.65 16 44 H 0.10 1.02 7.62 -2.39 -0.02 1.00 16 45 H 0.13 0.87 4.63 -2.38 -0.01 0.86 16 46 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -72.27 356.56 2.39 -69.89 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.24 Total: 26.15 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: 6.88 Total: 18.51 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -5.38 Total: -133.60 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -1.03 Total: -28.39 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.67 Total: 47.44 kcal Total: -72.27 2.39 -69.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993576712.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.203 kcal (2) G-P(sol) polarization free energy of solvation -72.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds