Wall clock time and date at job start Tue Mar 31 2020 14:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35772 * 117.00300 * 2 1 4 4 C 1.35585 * 126.08607 * 177.82543 * 3 2 1 5 5 C 1.41058 * 107.79919 * 180.02562 * 4 3 2 6 6 C 1.47719 * 125.98367 * 179.97438 * 5 4 3 7 7 O 1.21571 * 119.99721 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00002 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99938 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.49780 * 35.06606 * 9 8 6 11 11 C 1.53041 * 109.49926 * 275.00489 * 9 8 6 12 12 C 1.53041 * 109.53803 * 178.68289 * 11 9 8 13 13 C 1.53197 * 109.31402 * 61.36565 * 12 11 9 14 14 N 1.46928 * 108.76951 * 305.36141 * 13 12 11 15 15 C 1.36939 * 120.62940 * 233.60759 * 14 13 12 16 16 H 1.08000 * 120.00069 * 144.44815 * 15 14 13 17 17 C 1.38816 * 119.99959 * 324.44736 * 15 14 13 18 18 N 1.31620 * 120.00016 * 347.09488 * 17 15 14 19 19 Si 1.86795 * 119.99954 * 167.10046 * 17 15 14 20 20 H 1.48500 * 109.47524 * 59.99619 * 19 17 15 21 21 H 1.48492 * 109.47341 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47051 * 299.99945 * 19 17 15 23 23 C 1.46923 * 118.74189 * 53.61448 * 14 13 12 24 24 H 1.09003 * 109.58680 * 66.17237 * 23 14 13 25 25 C 1.52995 * 109.59166 * 186.60211 * 23 14 13 26 26 N 1.31868 * 108.03821 * 0.02562 * 5 4 3 27 27 N 1.35841 * 126.08041 * 357.85004 * 3 2 1 28 28 C 1.46504 * 125.94819 * 0.24313 * 27 3 2 29 29 H 1.08998 * 109.47320 * 50.16768 * 1 2 3 30 30 H 1.09005 * 109.47039 * 170.17720 * 1 2 3 31 31 H 1.09001 * 109.46756 * 290.17056 * 1 2 3 32 32 H 1.08004 * 126.10112 * 0.05630 * 4 3 2 33 33 H 0.96992 * 120.00052 * 0.02562 * 8 6 5 34 34 H 1.09004 * 109.45598 * 298.70144 * 11 9 8 35 35 H 1.09000 * 109.46030 * 58.66081 * 11 9 8 36 36 H 1.09004 * 109.49889 * 181.31400 * 12 11 9 37 37 H 1.08995 * 109.50083 * 301.40843 * 12 11 9 38 38 H 1.09000 * 109.58964 * 65.14808 * 13 12 11 39 39 H 1.09000 * 109.58457 * 185.58000 * 13 12 11 40 40 H 0.96996 * 119.99589 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.47884 * 179.28822 * 25 23 14 42 42 H 1.09011 * 109.47052 * 299.28948 * 25 23 14 43 43 H 1.08996 * 109.47161 * 59.27963 * 25 23 14 44 44 H 1.09000 * 109.47497 * 277.07473 * 28 27 3 45 45 H 1.08997 * 109.47193 * 37.08359 * 28 27 3 46 46 H 1.09010 * 109.46874 * 157.07800 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 3.3836 1.4241 0.0416 5 6 3.5976 2.8183 0.0254 6 6 4.9101 3.4953 0.0589 7 8 5.9319 2.8383 0.1044 8 7 4.9747 4.8414 0.0378 9 6 6.2763 5.5128 0.0705 10 1 7.0045 4.9220 -0.4854 11 6 6.7390 5.6599 1.5218 12 6 8.1137 6.3317 1.5552 13 6 8.0097 7.7295 0.9369 14 7 7.4291 7.6098 -0.4075 15 6 8.0664 8.1484 -1.4932 16 1 8.0269 7.6444 -2.4476 17 6 8.7633 9.3423 -1.3672 18 7 8.6077 10.0848 -0.2916 19 14 9.9218 9.8952 -2.7242 20 1 9.1614 10.0555 -3.9896 21 1 10.5387 11.1932 -2.3501 22 1 10.9861 8.8767 -2.9119 23 6 6.1516 6.9013 -0.5648 24 1 5.3597 7.4610 -0.0670 25 6 5.8247 6.7571 -2.0524 26 7 2.4209 3.4115 -0.0237 27 7 1.4312 2.4206 -0.0412 28 6 -0.0150 2.6502 -0.0884 29 1 -0.3634 0.6582 -0.7891 30 1 -0.3633 -1.0126 -0.1753 31 1 -0.3633 0.3544 0.9647 32 1 4.1491 0.6632 0.0797 33 1 4.1594 5.3655 0.0011 34 1 6.0228 6.2710 2.0711 35 1 6.8050 4.6747 1.9835 36 1 8.4530 6.4150 2.5877 37 1 8.8248 5.7337 0.9853 38 1 7.3693 8.3567 1.5570 39 1 9.0029 8.1732 0.8677 40 1 9.0944 10.9192 -0.2038 41 1 4.8831 6.2203 -2.1673 42 1 5.7364 7.7460 -2.5025 43 1 6.6219 6.2027 -2.5475 44 1 -0.3633 2.5629 -1.1176 45 1 -0.5209 1.9094 0.5306 46 1 -0.2366 3.6495 0.2866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993576720.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:25 Heat of formation + Delta-G solvation = 44.896757 kcal Electronic energy + Delta-G solvation = -27746.672441 eV Core-core repulsion = 23868.110379 eV Total energy + Delta-G solvation = -3878.562062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.84153 -39.62017 -38.52134 -37.43335 -34.25072 -33.76224 -32.52483 -31.60374 -30.45355 -29.15831 -28.23453 -26.79551 -26.04185 -24.93943 -23.55226 -21.81152 -21.50729 -20.62085 -19.91694 -19.29181 -18.27290 -17.06925 -16.55540 -16.25822 -15.99511 -15.58970 -15.23726 -15.10477 -14.77957 -14.50987 -14.23069 -13.91105 -13.74721 -13.61202 -13.42273 -13.22741 -13.18632 -12.72196 -12.50319 -11.84906 -11.71719 -11.62714 -11.47053 -11.02474 -11.01920 -10.87146 -10.71991 -10.54411 -10.24853 -10.13339 -10.01533 -9.96693 -9.64846 -9.42315 -9.32367 -8.64831 -8.60109 -8.42264 -6.53712 -5.76585 -3.26940 1.23603 1.85369 2.04205 2.52686 3.38839 3.40940 3.46063 3.48803 3.51858 3.93696 4.28051 4.40158 4.51999 4.58552 4.65366 4.75181 4.98461 5.07310 5.24396 5.36247 5.46880 5.57038 5.64501 5.67416 5.71233 5.85564 6.03791 6.15791 6.20148 6.29291 6.41545 6.50564 6.60091 6.67658 6.77032 6.81298 6.89663 6.97300 7.07408 7.11217 7.18371 7.41815 7.66546 7.82958 7.86603 8.41082 8.53133 9.24656 9.85239 10.46108 11.31983 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027029 B = 0.002630 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.677239 B =10645.066507 C =10965.244606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.288 6.288 3 C 0.266 3.734 4 C -0.234 4.234 5 C 0.064 3.936 6 C 0.596 3.404 7 O -0.526 6.526 8 N -0.701 5.701 9 C 0.130 3.870 10 H 0.089 0.911 11 C -0.117 4.117 12 C -0.140 4.140 13 C 0.173 3.827 14 N -0.580 5.580 15 C -0.255 4.255 16 H 0.066 0.934 17 C 0.010 3.990 18 N -0.900 5.900 19 Si 0.902 3.098 20 H -0.282 1.282 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.168 3.832 24 H 0.029 0.971 25 C -0.136 4.136 26 N -0.249 5.249 27 N -0.395 5.395 28 C 0.078 3.922 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.166 0.834 33 H 0.403 0.597 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.021 0.979 39 H 0.078 0.922 40 H 0.254 0.746 41 H 0.038 0.962 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.379 -16.534 2.297 25.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.194 6.194 3 C 0.100 3.900 4 C -0.264 4.264 5 C -0.103 4.103 6 C 0.378 3.622 7 O -0.400 6.400 8 N -0.351 5.351 9 C 0.024 3.976 10 H 0.107 0.893 11 C -0.156 4.156 12 C -0.180 4.180 13 C 0.048 3.952 14 N -0.304 5.304 15 C -0.385 4.385 16 H 0.084 0.916 17 C -0.189 4.189 18 N -0.543 5.543 19 Si 0.731 3.269 20 H -0.208 1.208 21 H -0.217 1.217 22 H -0.209 1.209 23 C 0.060 3.940 24 H 0.046 0.954 25 C -0.193 4.193 26 N -0.080 5.080 27 N -0.193 5.193 28 C -0.062 4.062 29 H 0.084 0.916 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.183 0.817 33 H 0.237 0.763 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.039 0.961 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.186 -16.002 2.312 25.090 hybrid contribution 0.086 -0.104 -0.579 0.595 sum -19.100 -16.106 1.733 25.044 Atomic orbital electron populations 1.23664 0.78073 1.05297 1.01561 1.86309 1.21549 1.21635 1.89942 1.19557 0.91076 0.78894 1.00499 1.20371 0.91939 0.95746 1.18361 1.22034 0.92972 0.93057 1.02281 1.16871 0.85651 0.82401 0.77293 1.90809 1.34077 1.65193 1.49920 1.46028 1.10901 1.05393 1.72749 1.21887 0.83007 0.95494 0.97182 0.89326 1.21769 0.98085 0.99811 0.95940 1.22185 0.95567 1.00389 0.99837 1.20757 0.99286 0.90500 0.84701 1.43956 1.18732 1.63288 1.04384 1.19033 1.27462 1.01304 0.90696 0.91649 1.25239 1.01042 0.95351 0.97307 1.70003 1.42847 1.13052 1.28376 0.86398 0.81141 0.77626 0.81718 1.20826 1.21690 1.20878 1.20575 0.90065 0.89121 0.94193 0.95394 1.21803 0.99234 1.01810 0.96481 1.77747 0.95123 1.10919 1.24207 1.49065 1.06919 1.02970 1.60298 1.22501 0.74717 1.05593 1.03430 0.91615 0.87364 0.91910 0.81679 0.76260 0.92657 0.93011 0.92979 0.92420 0.96111 0.90336 0.93598 0.94304 0.91741 0.92692 0.90313 0.88783 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.42 101.05 0.95 0.99 16 2 O -0.29 -2.63 10.57 -19.03 -0.20 -2.84 16 3 C 0.27 3.02 7.78 -16.72 -0.13 2.89 16 4 C -0.23 -3.19 10.59 -39.46 -0.42 -3.60 16 5 C 0.06 0.96 7.09 -82.91 -0.59 0.37 16 6 C 0.60 10.12 7.79 -12.39 -0.10 10.02 16 7 O -0.53 -10.48 16.56 5.30 0.09 -10.39 16 8 N -0.70 -11.41 4.57 -54.67 -0.25 -11.66 16 9 C 0.13 2.44 1.99 -67.81 -0.14 2.31 16 10 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 11 C -0.12 -2.18 5.46 -26.69 -0.15 -2.32 16 12 C -0.14 -2.79 6.08 -26.61 -0.16 -2.95 16 13 C 0.17 4.12 5.24 -3.71 -0.02 4.10 16 14 N -0.58 -14.31 2.95 -164.77 -0.49 -14.79 16 15 C -0.26 -6.85 8.39 -15.06 -0.13 -6.97 16 16 H 0.07 1.73 6.42 -52.49 -0.34 1.39 16 17 C 0.01 0.28 4.97 -17.43 -0.09 0.19 16 18 N -0.90 -25.87 11.52 55.49 0.64 -25.23 16 19 Si 0.90 21.63 29.57 -169.99 -5.03 16.61 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.17 3.49 3.03 -67.60 -0.21 3.28 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 25 C -0.14 -2.63 7.89 37.15 0.29 -2.34 16 26 N -0.25 -3.33 12.26 33.34 0.41 -2.92 16 27 N -0.40 -4.13 4.04 -68.18 -0.28 -4.41 16 28 C 0.08 0.40 9.56 59.85 0.57 0.98 16 29 H 0.07 0.19 5.65 -51.93 -0.29 -0.11 16 30 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.17 6.69 -51.93 -0.35 -0.18 16 32 H 0.17 2.16 8.06 -52.48 -0.42 1.74 16 33 H 0.40 5.89 8.30 -40.82 -0.34 5.55 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 2.07 6.52 -51.93 -0.34 1.73 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.04 0.64 7.78 -51.93 -0.40 0.24 16 42 H 0.06 1.33 7.71 -51.92 -0.40 0.93 16 43 H 0.05 1.10 7.37 -51.93 -0.38 0.72 16 44 H 0.08 0.29 7.58 -51.93 -0.39 -0.11 16 45 H 0.09 0.24 4.73 -51.93 -0.25 0.00 16 46 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 LS Contribution 366.49 15.07 5.52 5.52 Total: -1.00 -33.12 366.49 -6.69 -39.81 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.81 Total: 3.36 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -0.29 Total: 6.94 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.04 Total: -59.01 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.11 Total: -13.23 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.12 -6.69 -39.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993576720.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.703 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds