Wall clock time and date at job start Tue Mar 31 2020 14:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35772 * 117.00300 * 2 1 4 4 C 1.35585 * 126.08607 * 177.82543 * 3 2 1 5 5 C 1.41058 * 107.79919 * 180.02562 * 4 3 2 6 6 C 1.47719 * 125.98367 * 179.97438 * 5 4 3 7 7 O 1.21571 * 119.99721 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00002 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99938 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.49780 * 35.06606 * 9 8 6 11 11 C 1.53041 * 109.49926 * 275.00489 * 9 8 6 12 12 C 1.53041 * 109.53803 * 178.68289 * 11 9 8 13 13 C 1.53197 * 109.31402 * 61.36565 * 12 11 9 14 14 N 1.46928 * 108.76951 * 305.36141 * 13 12 11 15 15 C 1.36939 * 120.62940 * 233.60759 * 14 13 12 16 16 H 1.08000 * 120.00069 * 144.44815 * 15 14 13 17 17 C 1.38816 * 119.99959 * 324.44736 * 15 14 13 18 18 N 1.31620 * 120.00016 * 347.09488 * 17 15 14 19 19 Si 1.86795 * 119.99954 * 167.10046 * 17 15 14 20 20 H 1.48500 * 109.47524 * 59.99619 * 19 17 15 21 21 H 1.48492 * 109.47341 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47051 * 299.99945 * 19 17 15 23 23 C 1.46923 * 118.74189 * 53.61448 * 14 13 12 24 24 H 1.09003 * 109.58680 * 66.17237 * 23 14 13 25 25 C 1.52995 * 109.59166 * 186.60211 * 23 14 13 26 26 N 1.31868 * 108.03821 * 0.02562 * 5 4 3 27 27 N 1.35841 * 126.08041 * 357.85004 * 3 2 1 28 28 C 1.46504 * 125.94819 * 0.24313 * 27 3 2 29 29 H 1.08998 * 109.47320 * 50.16768 * 1 2 3 30 30 H 1.09005 * 109.47039 * 170.17720 * 1 2 3 31 31 H 1.09001 * 109.46756 * 290.17056 * 1 2 3 32 32 H 1.08004 * 126.10112 * 0.05630 * 4 3 2 33 33 H 0.96992 * 120.00052 * 0.02562 * 8 6 5 34 34 H 1.09004 * 109.45598 * 298.70144 * 11 9 8 35 35 H 1.09000 * 109.46030 * 58.66081 * 11 9 8 36 36 H 1.09004 * 109.49889 * 181.31400 * 12 11 9 37 37 H 1.08995 * 109.50083 * 301.40843 * 12 11 9 38 38 H 1.09000 * 109.58964 * 65.14808 * 13 12 11 39 39 H 1.09000 * 109.58457 * 185.58000 * 13 12 11 40 40 H 0.96996 * 119.99589 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.47884 * 179.28822 * 25 23 14 42 42 H 1.09011 * 109.47052 * 299.28948 * 25 23 14 43 43 H 1.08996 * 109.47161 * 59.27963 * 25 23 14 44 44 H 1.09000 * 109.47497 * 277.07473 * 28 27 3 45 45 H 1.08997 * 109.47193 * 37.08359 * 28 27 3 46 46 H 1.09010 * 109.46874 * 157.07800 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 3.3836 1.4241 0.0416 5 6 3.5976 2.8183 0.0254 6 6 4.9101 3.4953 0.0589 7 8 5.9319 2.8383 0.1044 8 7 4.9747 4.8414 0.0378 9 6 6.2763 5.5128 0.0705 10 1 7.0045 4.9220 -0.4854 11 6 6.7390 5.6599 1.5218 12 6 8.1137 6.3317 1.5552 13 6 8.0097 7.7295 0.9369 14 7 7.4291 7.6098 -0.4075 15 6 8.0664 8.1484 -1.4932 16 1 8.0269 7.6444 -2.4476 17 6 8.7633 9.3423 -1.3672 18 7 8.6077 10.0848 -0.2916 19 14 9.9218 9.8952 -2.7242 20 1 9.1614 10.0555 -3.9896 21 1 10.5387 11.1932 -2.3501 22 1 10.9861 8.8767 -2.9119 23 6 6.1516 6.9013 -0.5648 24 1 5.3597 7.4610 -0.0670 25 6 5.8247 6.7571 -2.0524 26 7 2.4209 3.4115 -0.0237 27 7 1.4312 2.4206 -0.0412 28 6 -0.0150 2.6502 -0.0884 29 1 -0.3634 0.6582 -0.7891 30 1 -0.3633 -1.0126 -0.1753 31 1 -0.3633 0.3544 0.9647 32 1 4.1491 0.6632 0.0797 33 1 4.1594 5.3655 0.0011 34 1 6.0228 6.2710 2.0711 35 1 6.8050 4.6747 1.9835 36 1 8.4530 6.4150 2.5877 37 1 8.8248 5.7337 0.9853 38 1 7.3693 8.3567 1.5570 39 1 9.0029 8.1732 0.8677 40 1 9.0944 10.9192 -0.2038 41 1 4.8831 6.2203 -2.1673 42 1 5.7364 7.7460 -2.5025 43 1 6.6219 6.2027 -2.5475 44 1 -0.3633 2.5629 -1.1176 45 1 -0.5209 1.9094 0.5306 46 1 -0.2366 3.6495 0.2866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993576720.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:24 Heat of formation + Delta-G solvation = 20.782446 kcal Electronic energy + Delta-G solvation = -27747.718116 eV Core-core repulsion = 23868.110379 eV Total energy + Delta-G solvation = -3879.607737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.71804 -40.97685 -39.45629 -38.91707 -35.90827 -34.57078 -34.19779 -33.36959 -31.53894 -30.66269 -28.98426 -27.95197 -27.16286 -26.77209 -24.84243 -23.19625 -22.50726 -22.29157 -21.29953 -20.79963 -19.25425 -18.23694 -17.71303 -17.49254 -17.34280 -16.79229 -16.32545 -16.20079 -16.13358 -15.62933 -15.55160 -15.37178 -15.05920 -14.84571 -14.62950 -14.51795 -14.29197 -13.97324 -13.88775 -13.31667 -13.24216 -12.76697 -12.70148 -12.53158 -12.41920 -12.39530 -12.28767 -12.03123 -11.86153 -11.76860 -11.76048 -11.63479 -11.32061 -11.07044 -10.51193 -10.28739 -10.00200 -9.53433 -8.54779 -7.84228 -5.37111 0.20574 1.05553 1.09563 1.48502 1.50792 1.56819 1.77706 2.25771 2.28384 2.54909 3.09410 3.31911 3.64814 3.81530 3.92504 4.00580 4.04340 4.17991 4.23032 4.27493 4.31484 4.38085 4.39219 4.52051 4.55129 4.64141 4.67461 4.73843 4.78358 4.91357 4.94084 5.00281 5.06264 5.15776 5.21580 5.22614 5.29981 5.45271 5.48431 5.55946 5.73795 5.75726 6.11750 6.28857 6.46892 6.55983 7.10157 7.19750 7.86443 8.42634 9.22271 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027029 B = 0.002630 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.677239 B =10645.066507 C =10965.244606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.299 6.299 3 C 0.282 3.718 4 C -0.264 4.264 5 C 0.045 3.955 6 C 0.599 3.401 7 O -0.561 6.561 8 N -0.691 5.691 9 C 0.145 3.855 10 H 0.065 0.935 11 C -0.110 4.110 12 C -0.129 4.129 13 C 0.180 3.820 14 N -0.598 5.598 15 C -0.258 4.258 16 H 0.066 0.934 17 C -0.041 4.041 18 N -0.931 5.931 19 Si 0.962 3.038 20 H -0.274 1.274 21 H -0.294 1.294 22 H -0.280 1.280 23 C 0.166 3.834 24 H 0.031 0.969 25 C -0.126 4.126 26 N -0.258 5.258 27 N -0.383 5.383 28 C 0.062 3.938 29 H 0.082 0.918 30 H 0.131 0.869 31 H 0.080 0.920 32 H 0.159 0.841 33 H 0.413 0.587 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.048 0.952 38 H 0.006 0.994 39 H 0.047 0.953 40 H 0.250 0.750 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.043 0.957 44 H 0.100 0.900 45 H 0.125 0.875 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.222 -18.008 2.057 28.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.205 6.205 3 C 0.113 3.887 4 C -0.294 4.294 5 C -0.121 4.121 6 C 0.383 3.617 7 O -0.438 6.438 8 N -0.342 5.342 9 C 0.039 3.961 10 H 0.083 0.917 11 C -0.149 4.149 12 C -0.168 4.168 13 C 0.054 3.946 14 N -0.322 5.322 15 C -0.388 4.388 16 H 0.084 0.916 17 C -0.238 4.238 18 N -0.576 5.576 19 Si 0.790 3.210 20 H -0.200 1.200 21 H -0.220 1.220 22 H -0.207 1.207 23 C 0.060 3.940 24 H 0.048 0.952 25 C -0.184 4.184 26 N -0.090 5.090 27 N -0.181 5.181 28 C -0.076 4.076 29 H 0.100 0.900 30 H 0.149 0.851 31 H 0.099 0.901 32 H 0.176 0.824 33 H 0.250 0.750 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.024 0.976 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.119 0.881 45 H 0.143 0.857 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.091 -17.495 2.062 28.255 hybrid contribution 0.743 0.237 -0.500 0.926 sum -21.348 -17.258 1.563 27.496 Atomic orbital electron populations 1.24121 0.75231 1.07469 1.03236 1.86336 1.24481 1.20233 1.89478 1.19417 0.90639 0.79926 0.98681 1.20412 0.93366 0.95290 1.20316 1.21589 0.92376 0.93468 1.04661 1.17121 0.86265 0.82142 0.76162 1.90782 1.35648 1.65867 1.51496 1.45803 1.10234 1.05422 1.72709 1.21450 0.83777 0.93960 0.96901 0.91664 1.21700 0.97325 1.00072 0.95812 1.22021 0.96440 0.97726 1.00624 1.20575 0.97115 0.92261 0.84645 1.44190 1.20287 1.63602 1.04120 1.19292 1.27170 1.01086 0.91290 0.91616 1.25926 1.02766 0.95687 0.99389 1.70142 1.43967 1.13325 1.30117 0.85440 0.79261 0.76809 0.79497 1.20002 1.22044 1.20661 1.20686 0.88404 0.89562 0.95388 0.95152 1.21704 1.00337 1.01155 0.95179 1.77647 0.95146 1.11957 1.24251 1.49417 1.08220 1.02115 1.58344 1.23054 0.71732 1.07178 1.05672 0.89955 0.85131 0.90143 0.82361 0.75029 0.91636 0.92341 0.90664 0.93349 0.97639 0.93486 0.94132 0.91286 0.93172 0.93821 0.88139 0.85735 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.03 9.42 113.37 1.07 1.04 16 2 O -0.30 -4.70 10.57 -90.99 -0.96 -5.66 16 3 C 0.28 5.85 7.78 83.46 0.65 6.50 16 4 C -0.26 -7.09 10.59 22.35 0.24 -6.85 16 5 C 0.05 1.32 7.09 42.34 0.30 1.62 16 6 C 0.60 20.32 7.79 86.75 0.68 20.99 16 7 O -0.56 -22.75 16.56 -3.94 -0.07 -22.81 16 8 N -0.69 -22.05 4.57 -445.14 -2.04 -24.09 16 9 C 0.15 5.45 1.99 45.07 0.09 5.54 16 10 H 0.07 2.80 7.58 -2.38 -0.02 2.78 16 11 C -0.11 -4.02 5.46 30.62 0.17 -3.85 16 12 C -0.13 -5.11 6.08 30.67 0.19 -4.92 16 13 C 0.18 8.74 5.24 86.36 0.45 9.19 16 14 N -0.60 -29.98 2.95 -675.21 -1.99 -31.97 16 15 C -0.26 -14.06 8.39 84.03 0.71 -13.36 16 16 H 0.07 3.52 6.42 -2.91 -0.02 3.50 16 17 C -0.04 -2.31 4.97 84.86 0.42 -1.89 16 18 N -0.93 -54.85 11.52 21.65 0.25 -54.60 16 19 Si 0.96 45.13 29.57 68.60 2.03 47.16 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 C 0.17 6.89 3.03 44.97 0.14 7.03 16 24 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 25 C -0.13 -4.84 7.89 71.98 0.57 -4.27 16 26 N -0.26 -6.46 12.26 -48.42 -0.59 -7.05 16 27 N -0.38 -6.98 4.04 -480.56 -1.94 -8.92 16 28 C 0.06 0.40 9.56 127.77 1.22 1.62 16 29 H 0.08 0.10 5.65 -2.39 -0.01 0.08 16 30 H 0.13 0.00 8.14 -2.38 -0.02 -0.02 16 31 H 0.08 0.08 6.69 -2.39 -0.02 0.06 16 32 H 0.16 4.28 8.06 -2.91 -0.02 4.25 16 33 H 0.41 11.55 8.30 -92.71 -0.77 10.78 16 34 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.05 2.56 6.52 -2.39 -0.02 2.55 16 40 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 41 H 0.07 2.19 7.78 -2.39 -0.02 2.17 16 42 H 0.05 2.05 7.71 -2.38 -0.02 2.03 16 43 H 0.04 1.75 7.37 -2.39 -0.02 1.73 16 44 H 0.10 0.28 7.58 -2.39 -0.02 0.27 16 45 H 0.12 0.06 4.73 -2.39 -0.01 0.05 16 46 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 Total: -1.00 -73.69 366.49 1.80 -71.88 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.24 Total: 17.69 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 6.88 Total: 18.37 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -6.31 Total: -126.64 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.03 Total: -28.47 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -73.69 1.80 -71.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993576720.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.665 kcal (2) G-P(sol) polarization free energy of solvation -73.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds