Wall clock time and date at job start Tue Mar 31 2020 14:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35851 * 117.00051 * 2 1 4 4 N 1.30810 * 126.05970 * 0.19645 * 3 2 1 5 5 N 1.39916 * 108.88201 * 180.24197 * 4 3 2 6 6 C 1.46504 * 125.69155 * 179.73684 * 5 4 3 7 7 C 1.34167 * 108.62289 * 359.73411 * 5 4 3 8 8 C 1.38129 * 107.50787 * 0.02562 * 7 5 4 9 9 C 1.47251 * 126.44921 * 179.97438 * 8 7 5 10 10 O 1.21622 * 120.00189 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99792 * 0.02562 * 9 8 7 12 12 C 1.46500 * 120.00109 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.49801 * 324.93718 * 12 11 9 14 14 C 1.53037 * 109.49614 * 85.00391 * 12 11 9 15 15 C 1.53038 * 109.52694 * 58.62513 * 14 12 11 16 16 C 1.53166 * 109.32787 * 61.37542 * 15 14 12 17 17 N 1.46931 * 108.76386 * 305.35615 * 16 15 14 18 18 C 1.36939 * 120.62669 * 233.63479 * 17 16 15 19 19 H 1.07993 * 120.00282 * 150.17549 * 18 17 16 20 20 C 1.38814 * 119.99978 * 330.16587 * 18 17 16 21 21 N 1.31627 * 119.99987 * 344.48846 * 20 18 17 22 22 Si 1.86799 * 119.99883 * 164.48238 * 20 18 17 23 23 H 1.48505 * 109.47234 * 60.00768 * 22 20 18 24 24 H 1.48508 * 109.47069 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47489 * 299.99968 * 22 20 18 26 26 C 1.46919 * 118.74389 * 53.60745 * 17 16 15 27 27 H 1.09000 * 109.58519 * 66.17714 * 26 17 16 28 28 C 1.52993 * 109.70597 * 186.53425 * 26 17 16 29 29 H 1.08997 * 109.46836 * 60.00108 * 1 2 3 30 30 H 1.09002 * 109.46836 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47263 * 300.00007 * 1 2 3 32 32 H 1.09003 * 109.46614 * 269.99883 * 6 5 4 33 33 H 1.08995 * 109.46515 * 29.99565 * 6 5 4 34 34 H 1.08997 * 109.47644 * 150.00175 * 6 5 4 35 35 H 1.08001 * 126.24523 * 180.02562 * 7 5 4 36 36 H 0.97001 * 119.99759 * 0.02562 * 11 9 8 37 37 H 1.08996 * 109.46131 * 178.64007 * 14 12 11 38 38 H 1.09000 * 109.45757 * 298.61338 * 14 12 11 39 39 H 1.09000 * 109.49680 * 181.30942 * 15 14 12 40 40 H 1.08995 * 109.49903 * 301.40739 * 15 14 12 41 41 H 1.08991 * 109.59171 * 185.57204 * 16 15 14 42 42 H 1.08995 * 109.70962 * 65.20655 * 16 15 14 43 43 H 0.96996 * 119.99377 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.47510 * 179.35967 * 28 26 17 45 45 H 1.08998 * 109.47311 * 299.35943 * 28 26 17 46 46 H 1.09004 * 109.47022 * 59.36147 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 7 1.4531 2.3766 0.0036 5 7 2.4281 3.3800 -0.0034 6 6 2.1704 4.8222 -0.0076 7 6 3.6386 2.8013 -0.0055 8 6 3.4452 1.4336 -0.0005 9 6 4.4956 0.4016 -0.0012 10 8 4.1912 -0.7759 0.0031 11 7 5.7943 0.7619 -0.0067 12 6 6.8393 -0.2648 -0.0080 13 1 6.5115 -1.1183 0.5855 14 6 7.1105 -0.7158 -1.4450 15 6 7.5394 0.4883 -2.2867 16 6 8.8327 1.0738 -1.7118 17 7 8.6233 1.3760 -0.2893 18 6 8.8873 2.6257 0.2046 19 1 8.3269 3.0028 1.0473 20 6 9.8753 3.4077 -0.3778 21 7 10.7569 2.8595 -1.1870 22 14 9.9536 5.2381 -0.0132 23 1 10.1456 5.4447 1.4448 24 1 11.0908 5.8420 -0.7532 25 1 8.6865 5.8829 -0.4420 26 6 8.1248 0.3124 0.5931 27 1 8.8745 -0.4745 0.6765 28 6 7.8293 0.8883 1.9794 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.1029 5.1762 -1.0364 33 1 1.2322 5.0250 0.5087 34 1 2.9844 5.3383 0.5015 35 1 4.5904 3.3116 -0.0103 36 1 6.0370 1.7010 -0.0098 37 1 7.9049 -1.4621 -1.4476 38 1 6.2037 -1.1492 -1.8668 39 1 7.7099 0.1708 -3.3154 40 1 6.7557 1.2455 -2.2643 41 1 9.0887 1.9887 -2.2460 42 1 9.6418 0.3510 -1.8165 43 1 11.4470 3.4061 -1.5942 44 1 7.4491 0.0986 2.6274 45 1 8.7451 1.2983 2.4052 46 1 7.0832 1.6782 1.8931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993682114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:31 Heat of formation + Delta-G solvation = 33.067175 kcal Electronic energy + Delta-G solvation = -28776.612998 eV Core-core repulsion = 24897.537967 eV Total energy + Delta-G solvation = -3879.075031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.47623 -39.28189 -38.27425 -37.27096 -33.81176 -32.96787 -32.36680 -31.71799 -30.46744 -29.07493 -27.97567 -26.49540 -25.96735 -24.98333 -22.98152 -21.80605 -20.94977 -20.71545 -20.05019 -18.61534 -17.89559 -16.87630 -16.38482 -16.30599 -15.74670 -15.20837 -15.09483 -15.05955 -14.66631 -14.48764 -13.95150 -13.80811 -13.36285 -13.16831 -13.06930 -12.88292 -12.72846 -12.64539 -12.47293 -12.00801 -11.82188 -11.27442 -11.23872 -11.17895 -10.98894 -10.88145 -10.72016 -10.57796 -10.49836 -10.11648 -9.98344 -9.62149 -9.37237 -9.26120 -9.17175 -8.56886 -8.50979 -8.24109 -6.66756 -5.82943 -3.28232 1.50027 2.11280 2.32486 3.20126 3.30324 3.35964 3.38700 3.84649 3.88428 4.31412 4.42131 4.67475 4.91420 4.99190 5.15019 5.16124 5.18169 5.31498 5.34645 5.40773 5.42816 5.58599 5.67243 5.73566 5.79044 5.83736 6.03759 6.17968 6.28145 6.41921 6.49681 6.60391 6.69317 6.73674 6.75889 6.84245 6.98996 7.01987 7.18324 7.24541 7.40214 7.56932 7.66969 7.75449 8.22742 8.41055 8.87400 9.16846 9.80236 10.38753 11.24986 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.004387 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.006278 B = 6381.003306 C = 7699.558634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.266 6.266 3 C 0.313 3.687 4 N -0.358 5.358 5 N -0.351 5.351 6 C 0.100 3.900 7 C 0.125 3.875 8 C -0.286 4.286 9 C 0.588 3.412 10 O -0.547 6.547 11 N -0.701 5.701 12 C 0.138 3.862 13 H 0.076 0.924 14 C -0.121 4.121 15 C -0.139 4.139 16 C 0.172 3.828 17 N -0.586 5.586 18 C -0.256 4.256 19 H 0.069 0.931 20 C 0.007 3.993 21 N -0.899 5.899 22 Si 0.899 3.101 23 H -0.283 1.283 24 H -0.292 1.292 25 H -0.285 1.285 26 C 0.159 3.841 27 H 0.039 0.961 28 C -0.134 4.134 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.193 0.807 36 H 0.403 0.597 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.018 0.982 43 H 0.254 0.746 44 H 0.039 0.961 45 H 0.062 0.938 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.661 1.728 1.727 15.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.168 6.168 3 C 0.108 3.892 4 N -0.198 5.198 5 N -0.133 5.133 6 C -0.040 4.040 7 C -0.027 4.027 8 C -0.301 4.301 9 C 0.375 3.625 10 O -0.425 6.425 11 N -0.352 5.352 12 C 0.031 3.969 13 H 0.094 0.906 14 C -0.160 4.160 15 C -0.178 4.178 16 C 0.047 3.953 17 N -0.310 5.310 18 C -0.386 4.386 19 H 0.087 0.913 20 C -0.193 4.193 21 N -0.542 5.542 22 Si 0.729 3.271 23 H -0.210 1.210 24 H -0.218 1.218 25 H -0.212 1.212 26 C 0.052 3.948 27 H 0.056 0.944 28 C -0.192 4.192 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.210 0.790 36 H 0.239 0.761 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.081 0.919 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.767 1.360 1.661 16.904 hybrid contribution 0.814 1.257 0.014 1.498 sum -15.953 2.617 1.675 16.253 Atomic orbital electron populations 1.22997 0.78151 1.03569 1.01783 1.86522 1.21401 1.20535 1.88358 1.20408 0.90194 0.85116 0.93494 1.77242 1.13354 0.94629 1.34555 1.47638 1.03183 1.06391 1.56054 1.22002 1.04452 0.73650 1.03938 1.23217 0.91277 0.92337 0.95844 1.19833 0.91869 0.92725 1.25687 1.17073 0.81783 0.87302 0.76379 1.90754 1.82456 1.18026 1.51307 1.45783 1.04372 1.10922 1.74172 1.21476 0.88443 0.90392 0.96575 0.90610 1.21771 1.00233 0.98130 0.95863 1.22119 1.00995 0.97187 0.97525 1.20773 0.90837 0.99387 0.84339 1.44144 1.76456 1.07378 1.02995 1.19093 1.13541 0.90470 1.15488 0.91319 1.25107 0.95272 0.98537 1.00354 1.70018 1.15923 1.34252 1.34048 0.86441 0.77056 0.85766 0.77828 1.20950 1.21766 1.21166 1.20725 0.91587 0.92049 0.90433 0.94369 1.21767 1.01673 0.99861 0.95907 0.92645 0.88184 0.92633 0.90229 0.89043 0.88673 0.79026 0.76123 0.92067 0.93025 0.93604 0.92859 0.89779 0.96435 0.93604 0.94155 0.91928 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.70 101.05 1.08 1.42 16 2 O -0.27 -4.29 9.98 -24.62 -0.25 -4.54 16 3 C 0.31 5.06 7.85 -16.66 -0.13 4.93 16 4 N -0.36 -5.11 11.90 30.79 0.37 -4.74 16 5 N -0.35 -4.08 3.97 -67.60 -0.27 -4.35 16 6 C 0.10 0.66 11.44 59.85 0.68 1.35 16 7 C 0.13 1.56 10.98 -16.57 -0.18 1.38 16 8 C -0.29 -4.58 6.14 -104.95 -0.64 -5.23 16 9 C 0.59 10.75 7.77 -12.60 -0.10 10.65 16 10 O -0.55 -11.77 16.10 -0.09 0.00 -11.77 16 11 N -0.70 -12.06 3.46 -54.82 -0.19 -12.25 16 12 C 0.14 2.50 2.32 -67.81 -0.16 2.34 16 13 H 0.08 1.41 7.58 -51.93 -0.39 1.02 16 14 C -0.12 -2.21 5.58 -26.69 -0.15 -2.36 16 15 C -0.14 -2.64 5.93 -26.63 -0.16 -2.80 16 16 C 0.17 3.86 5.28 -3.72 -0.02 3.84 16 17 N -0.59 -13.13 2.64 -164.80 -0.44 -13.56 16 18 C -0.26 -6.19 8.59 -15.06 -0.13 -6.32 16 19 H 0.07 1.59 6.24 -52.49 -0.33 1.26 16 20 C 0.01 0.17 4.94 -17.43 -0.09 0.08 16 21 N -0.90 -24.57 11.23 55.49 0.62 -23.94 16 22 Si 0.90 19.97 29.58 -169.99 -5.03 14.94 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.16 3.12 3.19 -67.61 -0.22 2.90 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 C -0.13 -2.40 7.73 37.15 0.29 -2.12 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.19 1.87 7.46 -52.49 -0.39 1.48 16 36 H 0.40 6.71 6.70 -40.82 -0.27 6.44 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 1.02 7.53 -51.93 -0.39 0.63 16 41 H 0.08 2.11 6.14 -51.93 -0.32 1.79 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16 46 H 0.05 0.92 6.39 -51.93 -0.33 0.59 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -32.44 370.34 -6.55 -38.99 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.03 Total: 5.57 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 0.08 Total: 10.08 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.10 Total: -58.85 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.25 Total: -16.31 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.44 -6.55 -38.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993682114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.055 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds