Wall clock time and date at job start Tue Mar 31 2020 14:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35851 * 117.00051 * 2 1 4 4 N 1.30810 * 126.05970 * 0.19645 * 3 2 1 5 5 N 1.39916 * 108.88201 * 180.24197 * 4 3 2 6 6 C 1.46504 * 125.69155 * 179.73684 * 5 4 3 7 7 C 1.34167 * 108.62289 * 359.73411 * 5 4 3 8 8 C 1.38129 * 107.50787 * 0.02562 * 7 5 4 9 9 C 1.47251 * 126.44921 * 179.97438 * 8 7 5 10 10 O 1.21622 * 120.00189 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99792 * 0.02562 * 9 8 7 12 12 C 1.46500 * 120.00109 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.49801 * 324.93718 * 12 11 9 14 14 C 1.53037 * 109.49614 * 85.00391 * 12 11 9 15 15 C 1.53038 * 109.52694 * 58.62513 * 14 12 11 16 16 C 1.53166 * 109.32787 * 61.37542 * 15 14 12 17 17 N 1.46931 * 108.76386 * 305.35615 * 16 15 14 18 18 C 1.36939 * 120.62669 * 233.63479 * 17 16 15 19 19 H 1.07993 * 120.00282 * 150.17549 * 18 17 16 20 20 C 1.38814 * 119.99978 * 330.16587 * 18 17 16 21 21 N 1.31627 * 119.99987 * 344.48846 * 20 18 17 22 22 Si 1.86799 * 119.99883 * 164.48238 * 20 18 17 23 23 H 1.48505 * 109.47234 * 60.00768 * 22 20 18 24 24 H 1.48508 * 109.47069 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47489 * 299.99968 * 22 20 18 26 26 C 1.46919 * 118.74389 * 53.60745 * 17 16 15 27 27 H 1.09000 * 109.58519 * 66.17714 * 26 17 16 28 28 C 1.52993 * 109.70597 * 186.53425 * 26 17 16 29 29 H 1.08997 * 109.46836 * 60.00108 * 1 2 3 30 30 H 1.09002 * 109.46836 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47263 * 300.00007 * 1 2 3 32 32 H 1.09003 * 109.46614 * 269.99883 * 6 5 4 33 33 H 1.08995 * 109.46515 * 29.99565 * 6 5 4 34 34 H 1.08997 * 109.47644 * 150.00175 * 6 5 4 35 35 H 1.08001 * 126.24523 * 180.02562 * 7 5 4 36 36 H 0.97001 * 119.99759 * 0.02562 * 11 9 8 37 37 H 1.08996 * 109.46131 * 178.64007 * 14 12 11 38 38 H 1.09000 * 109.45757 * 298.61338 * 14 12 11 39 39 H 1.09000 * 109.49680 * 181.30942 * 15 14 12 40 40 H 1.08995 * 109.49903 * 301.40739 * 15 14 12 41 41 H 1.08991 * 109.59171 * 185.57204 * 16 15 14 42 42 H 1.08995 * 109.70962 * 65.20655 * 16 15 14 43 43 H 0.96996 * 119.99377 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.47510 * 179.35967 * 28 26 17 45 45 H 1.08998 * 109.47311 * 299.35943 * 28 26 17 46 46 H 1.09004 * 109.47022 * 59.36147 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 7 1.4531 2.3766 0.0036 5 7 2.4281 3.3800 -0.0034 6 6 2.1704 4.8222 -0.0076 7 6 3.6386 2.8013 -0.0055 8 6 3.4452 1.4336 -0.0005 9 6 4.4956 0.4016 -0.0012 10 8 4.1912 -0.7759 0.0031 11 7 5.7943 0.7619 -0.0067 12 6 6.8393 -0.2648 -0.0080 13 1 6.5115 -1.1183 0.5855 14 6 7.1105 -0.7158 -1.4450 15 6 7.5394 0.4883 -2.2867 16 6 8.8327 1.0738 -1.7118 17 7 8.6233 1.3760 -0.2893 18 6 8.8873 2.6257 0.2046 19 1 8.3269 3.0028 1.0473 20 6 9.8753 3.4077 -0.3778 21 7 10.7569 2.8595 -1.1870 22 14 9.9536 5.2381 -0.0132 23 1 10.1456 5.4447 1.4448 24 1 11.0908 5.8420 -0.7532 25 1 8.6865 5.8829 -0.4420 26 6 8.1248 0.3124 0.5931 27 1 8.8745 -0.4745 0.6765 28 6 7.8293 0.8883 1.9794 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.1029 5.1762 -1.0364 33 1 1.2322 5.0250 0.5087 34 1 2.9844 5.3383 0.5015 35 1 4.5904 3.3116 -0.0103 36 1 6.0370 1.7010 -0.0098 37 1 7.9049 -1.4621 -1.4476 38 1 6.2037 -1.1492 -1.8668 39 1 7.7099 0.1708 -3.3154 40 1 6.7557 1.2455 -2.2643 41 1 9.0887 1.9887 -2.2460 42 1 9.6418 0.3510 -1.8165 43 1 11.4470 3.4061 -1.5942 44 1 7.4491 0.0986 2.6274 45 1 8.7451 1.2983 2.4052 46 1 7.0832 1.6782 1.8931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993682114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:30 Heat of formation + Delta-G solvation = 10.416403 kcal Electronic energy + Delta-G solvation = -28777.595209 eV Core-core repulsion = 24897.537967 eV Total energy + Delta-G solvation = -3880.057242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.51186 -40.75645 -39.31090 -38.83379 -35.48380 -34.04070 -33.76628 -33.33045 -31.81302 -30.54910 -28.81227 -27.88505 -27.06220 -26.71897 -24.29332 -23.31262 -22.29827 -21.97186 -21.35322 -20.16355 -19.07593 -18.16242 -17.96142 -17.32372 -17.05950 -16.69140 -16.28160 -16.04076 -15.94985 -15.81379 -15.60317 -15.19982 -14.88828 -14.57891 -14.52849 -14.18997 -13.89273 -13.53403 -13.47295 -13.44825 -12.90020 -12.83628 -12.78888 -12.62364 -12.37743 -12.29515 -12.14332 -12.11331 -11.92439 -11.87857 -11.60878 -11.29647 -10.96534 -10.80270 -10.41324 -10.22104 -9.86120 -9.44424 -8.53417 -7.74037 -5.21173 0.49505 1.15230 1.26988 1.57390 1.58007 1.64510 2.22077 2.53198 2.56663 2.61567 3.41863 3.42662 3.66156 3.80799 4.05453 4.15423 4.26581 4.27848 4.32371 4.34099 4.39488 4.46494 4.48803 4.56976 4.62821 4.65950 4.73522 4.74870 4.77283 4.87978 5.02454 5.05639 5.12253 5.20535 5.30295 5.41618 5.52424 5.61862 5.74893 5.82103 5.84224 5.88367 6.17200 6.51246 6.52039 6.86904 7.26479 7.50210 7.96579 8.51817 9.32857 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.004387 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.006278 B = 6381.003306 C = 7699.558634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.297 6.297 3 C 0.295 3.705 4 N -0.366 5.366 5 N -0.340 5.340 6 C 0.087 3.913 7 C 0.148 3.852 8 C -0.325 4.325 9 C 0.591 3.409 10 O -0.587 6.587 11 N -0.693 5.693 12 C 0.146 3.854 13 H 0.074 0.926 14 C -0.116 4.116 15 C -0.124 4.124 16 C 0.182 3.818 17 N -0.595 5.595 18 C -0.247 4.247 19 H 0.085 0.915 20 C -0.049 4.049 21 N -0.938 5.938 22 Si 0.960 3.040 23 H -0.279 1.279 24 H -0.309 1.309 25 H -0.268 1.268 26 C 0.158 3.842 27 H 0.028 0.972 28 C -0.127 4.127 29 H 0.060 0.940 30 H 0.121 0.879 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.223 0.777 36 H 0.407 0.593 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.057 0.943 42 H -0.008 1.008 43 H 0.245 0.755 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.357 3.562 2.484 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.200 6.200 3 C 0.090 3.910 4 N -0.207 5.207 5 N -0.121 5.121 6 C -0.051 4.051 7 C -0.007 4.007 8 C -0.341 4.341 9 C 0.379 3.621 10 O -0.469 6.469 11 N -0.344 5.344 12 C 0.040 3.960 13 H 0.092 0.908 14 C -0.155 4.155 15 C -0.163 4.163 16 C 0.056 3.944 17 N -0.318 5.318 18 C -0.377 4.377 19 H 0.102 0.898 20 C -0.245 4.245 21 N -0.585 5.585 22 Si 0.789 3.211 23 H -0.205 1.205 24 H -0.236 1.236 25 H -0.193 1.193 26 C 0.052 3.948 27 H 0.046 0.954 28 C -0.184 4.184 29 H 0.078 0.922 30 H 0.139 0.861 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.142 0.858 35 H 0.239 0.761 36 H 0.244 0.756 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.010 0.990 43 H 0.054 0.946 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.522 3.227 2.438 18.958 hybrid contribution 1.285 0.707 -0.197 1.480 sum -17.237 3.934 2.240 17.821 Atomic orbital electron populations 1.23231 0.76024 1.05210 1.02274 1.86461 1.23752 1.21296 1.88445 1.20639 0.90541 0.85536 0.94273 1.77207 1.14199 0.94626 1.34623 1.48131 1.02525 1.07671 1.53736 1.22496 1.06244 0.70751 1.05616 1.23540 0.92510 0.91167 0.93477 1.19779 0.91351 0.93773 1.29150 1.17352 0.82140 0.87268 0.75294 1.90723 1.83002 1.19839 1.53314 1.45642 1.03951 1.10758 1.74001 1.21265 0.87940 0.90524 0.96313 0.90793 1.21718 1.00188 0.97807 0.95759 1.21933 0.98965 0.97307 0.98130 1.20540 0.91722 0.97491 0.84658 1.44327 1.76300 1.07832 1.03389 1.19492 1.12508 0.90839 1.14844 0.89783 1.25821 0.95419 1.02258 1.00969 1.70196 1.16972 1.35276 1.36015 0.85457 0.76919 0.81346 0.77359 1.20526 1.23627 1.19301 1.20811 0.91756 0.91144 0.91136 0.95448 1.21689 1.01232 1.00641 0.94853 0.92164 0.86064 0.92022 0.88632 0.88054 0.85816 0.76098 0.75594 0.91711 0.93147 0.92326 0.92623 0.92505 0.99019 0.94621 0.92187 0.93310 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.70 113.37 1.21 1.79 16 2 O -0.30 -9.57 9.98 -86.76 -0.87 -10.43 16 3 C 0.29 9.32 7.85 85.70 0.67 9.99 16 4 N -0.37 -9.81 11.90 -169.99 -2.02 -11.83 16 5 N -0.34 -6.87 3.97 -367.78 -1.46 -8.33 16 6 C 0.09 0.80 11.44 127.77 1.46 2.26 16 7 C 0.15 3.24 10.98 84.31 0.93 4.17 16 8 C -0.33 -10.01 6.14 -20.08 -0.12 -10.14 16 9 C 0.59 21.11 7.77 86.61 0.67 21.79 16 10 O -0.59 -25.34 16.10 1.02 0.02 -25.33 16 11 N -0.69 -22.79 3.46 -445.60 -1.54 -24.33 16 12 C 0.15 5.18 2.32 45.07 0.10 5.28 16 13 H 0.07 2.70 7.58 -2.39 -0.02 2.68 16 14 C -0.12 -4.14 5.58 30.62 0.17 -3.97 16 15 C -0.12 -4.62 5.93 30.66 0.18 -4.44 16 16 C 0.18 8.22 5.28 86.35 0.46 8.67 16 17 N -0.59 -26.31 2.64 -675.31 -1.79 -28.10 16 18 C -0.25 -11.61 8.59 84.03 0.72 -10.89 16 19 H 0.08 3.66 6.24 -2.91 -0.02 3.64 16 20 C -0.05 -2.50 4.94 84.86 0.42 -2.08 16 21 N -0.94 -52.23 11.23 21.65 0.24 -51.99 16 22 Si 0.96 40.39 29.58 68.60 2.03 42.42 16 23 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 24 H -0.31 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 26 C 0.16 6.05 3.19 44.97 0.14 6.19 16 27 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 28 C -0.13 -4.29 7.73 71.98 0.56 -3.73 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.22 3.38 7.46 -2.91 -0.02 3.35 16 36 H 0.41 12.63 6.70 -92.71 -0.62 12.01 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 2.05 7.53 -2.39 -0.02 2.03 16 41 H 0.06 2.90 6.14 -2.39 -0.01 2.88 16 42 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H 0.24 13.50 8.31 -92.71 -0.77 12.73 16 44 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.05 1.78 7.67 -2.39 -0.02 1.76 16 46 H 0.06 1.97 6.39 -2.39 -0.02 1.95 16 Total: -1.00 -71.42 370.34 2.56 -68.86 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.37 Total: 24.17 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: 7.58 Total: 24.90 kcal Atomic # 7 Polarization: -118.01 SS G_CDS: -6.57 Total: -124.58 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -0.85 Total: -35.76 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -71.42 2.56 -68.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993682114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.276 kcal (2) G-P(sol) polarization free energy of solvation -71.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds