Wall clock time and date at job start Tue Mar 31 2020 14:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35853 * 116.99928 * 2 1 4 4 N 1.30808 * 126.06089 * 359.97438 * 3 2 1 5 5 N 1.39919 * 108.88042 * 180.02562 * 4 3 2 6 6 C 1.46506 * 125.68647 * 179.97438 * 5 4 3 7 7 C 1.34160 * 108.62499 * 359.75221 * 5 4 3 8 8 C 1.38133 * 107.50564 * 0.39435 * 7 5 4 9 9 C 1.47252 * 126.44827 * 179.86644 * 8 7 5 10 10 O 1.21620 * 120.00358 * 179.68664 * 9 8 7 11 11 N 1.34773 * 119.99959 * 359.69545 * 9 8 7 12 12 C 1.46498 * 120.00329 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.49586 * 325.06024 * 12 11 9 14 14 C 1.53036 * 109.49822 * 85.15823 * 12 11 9 15 15 C 1.53045 * 109.53891 * 181.31791 * 14 12 11 16 16 C 1.53196 * 109.31092 * 298.63935 * 15 14 12 17 17 N 1.46924 * 108.77816 * 54.63265 * 16 15 14 18 18 C 1.36935 * 120.62827 * 126.41621 * 17 16 15 19 19 H 1.08002 * 119.99539 * 209.00733 * 18 17 16 20 20 C 1.38814 * 120.00426 * 29.00982 * 18 17 16 21 21 N 1.31612 * 119.99931 * 15.02171 * 20 18 17 22 22 Si 1.86801 * 120.00047 * 195.02366 * 20 18 17 23 23 H 1.48501 * 109.47104 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47119 * 119.99713 * 22 20 18 25 25 H 1.48497 * 109.46922 * 239.99906 * 22 20 18 26 26 C 1.46923 * 118.73662 * 306.39228 * 17 16 15 27 27 H 1.09007 * 109.58375 * 293.67475 * 26 17 16 28 28 C 1.53002 * 109.58650 * 173.39874 * 26 17 16 29 29 H 1.09005 * 109.46943 * 300.00700 * 1 2 3 30 30 H 1.09003 * 109.47159 * 60.00045 * 1 2 3 31 31 H 1.09003 * 109.47193 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47223 * 90.02384 * 6 5 4 33 33 H 1.08996 * 109.46612 * 210.02348 * 6 5 4 34 34 H 1.09003 * 109.46908 * 330.02308 * 6 5 4 35 35 H 1.07998 * 126.24867 * 180.26535 * 7 5 4 36 36 H 0.97009 * 120.00193 * 359.97438 * 11 9 8 37 37 H 1.08998 * 109.45801 * 61.30206 * 14 12 11 38 38 H 1.08999 * 109.45969 * 301.33670 * 14 12 11 39 39 H 1.08995 * 109.50047 * 178.68742 * 15 14 12 40 40 H 1.09006 * 109.49321 * 58.58369 * 15 14 12 41 41 H 1.09007 * 109.58386 * 174.42345 * 16 15 14 42 42 H 1.09004 * 109.58479 * 294.84261 * 16 15 14 43 43 H 0.97000 * 120.00190 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.47119 * 59.99766 * 28 26 17 45 45 H 1.08997 * 109.47533 * 179.97438 * 28 26 17 46 46 H 1.09002 * 109.46826 * 300.00159 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 7 1.4531 2.3766 -0.0005 5 7 2.4282 3.3800 -0.0009 6 6 2.1705 4.8222 -0.0020 7 6 3.6386 2.8013 0.0049 8 6 3.4452 1.4336 -0.0001 9 6 4.4956 0.4016 0.0006 10 8 4.1912 -0.7759 0.0015 11 7 5.7942 0.7618 0.0004 12 6 6.8393 -0.2649 0.0017 13 1 6.5084 -1.1200 0.5911 14 6 7.1185 -0.7113 -1.4352 15 6 8.1868 -1.8072 -1.4322 16 6 9.4839 -1.2488 -0.8386 17 7 9.1934 -0.6857 0.4870 18 6 9.9087 -1.0820 1.5854 19 1 9.4501 -1.0658 2.5630 20 6 11.2232 -1.5044 1.4422 21 7 11.8777 -1.2528 0.3285 22 14 12.0632 -2.4301 2.8304 23 1 11.1181 -2.5845 3.9654 24 1 12.4812 -3.7714 2.3492 25 1 13.2576 -1.6710 3.2799 26 6 8.1211 0.3110 0.6115 27 1 8.4042 1.2204 0.0812 28 6 7.8874 0.6310 2.0894 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.1066 5.1807 1.0254 33 1 2.9826 5.3360 -0.5163 34 1 1.2304 5.0229 -0.5159 35 1 4.5904 3.3116 0.0101 36 1 6.0371 1.7010 -0.0006 37 1 7.4728 0.1394 -2.0174 38 1 6.2019 -1.0989 -1.8797 39 1 8.3684 -2.1411 -2.4538 40 1 7.8434 -2.6482 -0.8296 41 1 10.2166 -2.0502 -0.7427 42 1 9.8769 -0.4676 -1.4893 43 1 12.7964 -1.5477 0.2286 44 1 8.8042 1.0288 2.5244 45 1 7.0920 1.3707 2.1796 46 1 7.5997 -0.2785 2.6169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993682119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:34 Heat of formation + Delta-G solvation = 33.144796 kcal Electronic energy + Delta-G solvation = -27990.469563 eV Core-core repulsion = 24111.397898 eV Total energy + Delta-G solvation = -3879.071665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.64223 -39.25385 -38.39150 -37.36455 -34.14825 -33.13750 -32.51136 -31.68581 -30.62867 -28.92619 -28.08968 -26.58851 -25.94070 -24.94311 -23.12585 -21.77294 -21.05067 -20.60362 -19.95439 -19.38805 -17.98225 -16.98052 -16.45790 -16.33031 -15.83543 -15.48111 -15.20159 -15.15636 -14.77075 -14.37562 -13.98710 -13.70277 -13.59961 -13.37955 -13.06676 -12.99614 -12.92599 -12.63399 -12.46003 -12.09374 -11.63807 -11.48753 -11.39128 -11.05935 -11.01308 -10.88213 -10.71581 -10.49025 -10.21609 -10.05500 -9.97445 -9.80055 -9.48665 -9.33769 -9.26626 -8.70816 -8.49131 -8.36840 -6.63243 -5.75869 -3.19872 1.30784 1.94770 2.17984 3.07296 3.39399 3.47523 3.49429 3.62272 3.70461 4.13379 4.41279 4.52780 4.73203 4.82798 4.99198 5.04589 5.08817 5.20963 5.32786 5.35264 5.39573 5.50106 5.59114 5.62468 5.73125 5.88895 6.05109 6.16997 6.28597 6.41543 6.47517 6.51366 6.62716 6.72861 6.82278 6.84073 6.95303 7.04299 7.05069 7.16114 7.42482 7.46686 7.72852 7.85472 7.96060 8.47969 8.69541 9.24124 9.86999 10.43179 11.32647 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021077 B = 0.002934 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.151876 B = 9540.810507 C = 9856.352751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.265 6.265 3 C 0.315 3.685 4 N -0.355 5.355 5 N -0.351 5.351 6 C 0.101 3.899 7 C 0.120 3.880 8 C -0.285 4.285 9 C 0.590 3.410 10 O -0.533 6.533 11 N -0.719 5.719 12 C 0.134 3.866 13 H 0.086 0.914 14 C -0.117 4.117 15 C -0.141 4.141 16 C 0.170 3.830 17 N -0.583 5.583 18 C -0.249 4.249 19 H 0.071 0.929 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.168 3.832 27 H 0.027 0.973 28 C -0.136 4.136 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.190 0.810 36 H 0.390 0.610 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.089 0.911 42 H 0.018 0.982 43 H 0.252 0.748 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.999 12.805 -2.493 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.167 6.167 3 C 0.110 3.890 4 N -0.196 5.196 5 N -0.133 5.133 6 C -0.040 4.040 7 C -0.032 4.032 8 C -0.300 4.300 9 C 0.376 3.624 10 O -0.410 6.410 11 N -0.369 5.369 12 C 0.029 3.971 13 H 0.104 0.896 14 C -0.155 4.155 15 C -0.180 4.180 16 C 0.044 3.956 17 N -0.306 5.306 18 C -0.378 4.378 19 H 0.089 0.911 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.060 3.940 27 H 0.044 0.956 28 C -0.194 4.194 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.207 0.793 36 H 0.223 0.777 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.036 0.964 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.102 12.277 -2.507 23.688 hybrid contribution 1.115 -0.155 0.571 1.262 sum -18.988 12.122 -1.936 22.610 Atomic orbital electron populations 1.23023 0.77933 1.03764 1.01809 1.86541 1.21584 1.20398 1.88195 1.20429 0.90202 0.85184 0.93234 1.77288 1.13194 0.94623 1.34473 1.47651 1.03193 1.06442 1.55984 1.21997 1.04502 0.73594 1.03925 1.23084 0.91208 0.92211 0.96669 1.19861 0.91976 0.92691 1.25487 1.17050 0.81578 0.87424 0.76374 1.90803 1.82175 1.18009 1.49987 1.45929 1.05315 1.10051 1.75646 1.21732 0.87413 0.91007 0.96998 0.89576 1.21763 0.98619 0.98887 0.96279 1.22188 0.98168 0.97874 0.99800 1.20849 0.92548 0.97522 0.84673 1.44048 1.36904 1.44219 1.05445 1.19229 0.92201 1.38219 0.88200 0.91130 1.25062 0.95933 1.01357 0.97209 1.70027 1.10202 1.48232 1.26316 0.86243 0.79286 0.79581 0.81803 1.20220 1.21598 1.21816 1.20560 0.87452 0.91655 0.94299 0.95584 1.21820 1.00384 1.00482 0.96713 0.92562 0.92575 0.88035 0.90204 0.88790 0.88952 0.79268 0.77696 0.92898 0.93105 0.93107 0.92516 0.89305 0.96385 0.93757 0.91862 0.94305 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.70 101.05 1.08 1.39 16 2 O -0.27 -4.05 9.99 -24.64 -0.25 -4.30 16 3 C 0.31 4.64 7.85 -16.66 -0.13 4.51 16 4 N -0.36 -4.48 11.90 30.79 0.37 -4.11 16 5 N -0.35 -3.24 3.97 -67.60 -0.27 -3.50 16 6 C 0.10 0.41 11.44 59.85 0.68 1.09 16 7 C 0.12 1.13 10.98 -16.57 -0.18 0.94 16 8 C -0.28 -3.99 6.14 -104.95 -0.64 -4.63 16 9 C 0.59 9.95 7.78 -12.60 -0.10 9.85 16 10 O -0.53 -11.34 16.09 -0.10 0.00 -11.35 16 11 N -0.72 -10.82 4.58 -54.83 -0.25 -11.07 16 12 C 0.13 2.49 1.99 -67.81 -0.14 2.35 16 13 H 0.09 1.87 7.58 -51.93 -0.39 1.47 16 14 C -0.12 -2.16 5.46 -26.69 -0.15 -2.31 16 15 C -0.14 -2.84 6.08 -26.61 -0.16 -3.00 16 16 C 0.17 4.04 5.29 -3.71 -0.02 4.02 16 17 N -0.58 -14.23 2.99 -164.77 -0.49 -14.73 16 18 C -0.25 -6.64 8.60 -15.06 -0.13 -6.76 16 19 H 0.07 1.85 6.21 -52.49 -0.33 1.53 16 20 C 0.00 0.08 4.96 -17.43 -0.09 -0.01 16 21 N -0.90 -25.81 11.14 55.49 0.62 -25.19 16 22 Si 0.90 21.61 29.58 -169.99 -5.03 16.58 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 C 0.17 3.37 3.03 -67.60 -0.21 3.16 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 C -0.14 -2.52 7.83 37.16 0.29 -2.23 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.19 0.94 7.46 -52.49 -0.39 0.55 16 36 H 0.39 4.50 7.52 -40.82 -0.31 4.20 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.06 1.24 7.62 -51.93 -0.40 0.84 16 45 H 0.04 0.58 7.80 -51.93 -0.41 0.18 16 46 H 0.05 1.09 7.45 -51.93 -0.39 0.70 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -35.70 373.38 -6.69 -42.39 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.13 Total: 1.29 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 0.12 Total: 8.37 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.03 Total: -58.61 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.25 Total: -15.64 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.70 -6.69 -42.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993682119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.532 kcal (2) G-P(sol) polarization free energy of solvation -35.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds