Wall clock time and date at job start Tue Mar 31 2020 14:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35853 * 116.99928 * 2 1 4 4 N 1.30808 * 126.06089 * 359.97438 * 3 2 1 5 5 N 1.39919 * 108.88042 * 180.02562 * 4 3 2 6 6 C 1.46506 * 125.68647 * 179.97438 * 5 4 3 7 7 C 1.34160 * 108.62499 * 359.75221 * 5 4 3 8 8 C 1.38133 * 107.50564 * 0.39435 * 7 5 4 9 9 C 1.47252 * 126.44827 * 179.86644 * 8 7 5 10 10 O 1.21620 * 120.00358 * 179.68664 * 9 8 7 11 11 N 1.34773 * 119.99959 * 359.69545 * 9 8 7 12 12 C 1.46498 * 120.00329 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.49586 * 325.06024 * 12 11 9 14 14 C 1.53036 * 109.49822 * 85.15823 * 12 11 9 15 15 C 1.53045 * 109.53891 * 181.31791 * 14 12 11 16 16 C 1.53196 * 109.31092 * 298.63935 * 15 14 12 17 17 N 1.46924 * 108.77816 * 54.63265 * 16 15 14 18 18 C 1.36935 * 120.62827 * 126.41621 * 17 16 15 19 19 H 1.08002 * 119.99539 * 209.00733 * 18 17 16 20 20 C 1.38814 * 120.00426 * 29.00982 * 18 17 16 21 21 N 1.31612 * 119.99931 * 15.02171 * 20 18 17 22 22 Si 1.86801 * 120.00047 * 195.02366 * 20 18 17 23 23 H 1.48501 * 109.47104 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47119 * 119.99713 * 22 20 18 25 25 H 1.48497 * 109.46922 * 239.99906 * 22 20 18 26 26 C 1.46923 * 118.73662 * 306.39228 * 17 16 15 27 27 H 1.09007 * 109.58375 * 293.67475 * 26 17 16 28 28 C 1.53002 * 109.58650 * 173.39874 * 26 17 16 29 29 H 1.09005 * 109.46943 * 300.00700 * 1 2 3 30 30 H 1.09003 * 109.47159 * 60.00045 * 1 2 3 31 31 H 1.09003 * 109.47193 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47223 * 90.02384 * 6 5 4 33 33 H 1.08996 * 109.46612 * 210.02348 * 6 5 4 34 34 H 1.09003 * 109.46908 * 330.02308 * 6 5 4 35 35 H 1.07998 * 126.24867 * 180.26535 * 7 5 4 36 36 H 0.97009 * 120.00193 * 359.97438 * 11 9 8 37 37 H 1.08998 * 109.45801 * 61.30206 * 14 12 11 38 38 H 1.08999 * 109.45969 * 301.33670 * 14 12 11 39 39 H 1.08995 * 109.50047 * 178.68742 * 15 14 12 40 40 H 1.09006 * 109.49321 * 58.58369 * 15 14 12 41 41 H 1.09007 * 109.58386 * 174.42345 * 16 15 14 42 42 H 1.09004 * 109.58479 * 294.84261 * 16 15 14 43 43 H 0.97000 * 120.00190 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.47119 * 59.99766 * 28 26 17 45 45 H 1.08997 * 109.47533 * 179.97438 * 28 26 17 46 46 H 1.09002 * 109.46826 * 300.00159 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 7 1.4531 2.3766 -0.0005 5 7 2.4282 3.3800 -0.0009 6 6 2.1705 4.8222 -0.0020 7 6 3.6386 2.8013 0.0049 8 6 3.4452 1.4336 -0.0001 9 6 4.4956 0.4016 0.0006 10 8 4.1912 -0.7759 0.0015 11 7 5.7942 0.7618 0.0004 12 6 6.8393 -0.2649 0.0017 13 1 6.5084 -1.1200 0.5911 14 6 7.1185 -0.7113 -1.4352 15 6 8.1868 -1.8072 -1.4322 16 6 9.4839 -1.2488 -0.8386 17 7 9.1934 -0.6857 0.4870 18 6 9.9087 -1.0820 1.5854 19 1 9.4501 -1.0658 2.5630 20 6 11.2232 -1.5044 1.4422 21 7 11.8777 -1.2528 0.3285 22 14 12.0632 -2.4301 2.8304 23 1 11.1181 -2.5845 3.9654 24 1 12.4812 -3.7714 2.3492 25 1 13.2576 -1.6710 3.2799 26 6 8.1211 0.3110 0.6115 27 1 8.4042 1.2204 0.0812 28 6 7.8874 0.6310 2.0894 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.1066 5.1807 1.0254 33 1 2.9826 5.3360 -0.5163 34 1 1.2304 5.0229 -0.5159 35 1 4.5904 3.3116 0.0101 36 1 6.0371 1.7010 -0.0006 37 1 7.4728 0.1394 -2.0174 38 1 6.2019 -1.0989 -1.8797 39 1 8.3684 -2.1411 -2.4538 40 1 7.8434 -2.6482 -0.8296 41 1 10.2166 -2.0502 -0.7427 42 1 9.8769 -0.4676 -1.4893 43 1 12.7964 -1.5477 0.2286 44 1 8.8042 1.0288 2.5244 45 1 7.0920 1.3707 2.1796 46 1 7.5997 -0.2785 2.6169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993682119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:33 Heat of formation + Delta-G solvation = 5.801424 kcal Electronic energy + Delta-G solvation = -27991.655261 eV Core-core repulsion = 24111.397898 eV Total energy + Delta-G solvation = -3880.257363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.50941 -40.66483 -39.32116 -38.95630 -35.78366 -34.25533 -33.79333 -33.36654 -31.83681 -30.44081 -28.81404 -27.89741 -27.09165 -26.72536 -24.40791 -23.10766 -22.30399 -21.89583 -21.22639 -20.95306 -19.04103 -18.27199 -17.89798 -17.32552 -17.20133 -16.74682 -16.43271 -15.98600 -15.94012 -15.68297 -15.54914 -15.45097 -14.97156 -14.81700 -14.43731 -14.23871 -13.94311 -13.48411 -13.46117 -13.29586 -13.19340 -12.84720 -12.80547 -12.65982 -12.46220 -12.31243 -12.14463 -11.96991 -11.91611 -11.75891 -11.71861 -11.56850 -11.13237 -10.81243 -10.49632 -10.22364 -9.94126 -9.46448 -8.60906 -7.81916 -5.27254 0.51725 1.14159 1.29155 1.47369 1.50928 1.59821 2.16405 2.42978 2.51763 2.59294 3.33735 3.41335 3.69154 3.81669 3.97222 4.10142 4.24435 4.26674 4.31699 4.32383 4.38007 4.43007 4.52321 4.55648 4.58554 4.66125 4.68679 4.74380 4.80586 4.85637 4.94458 4.99836 5.10315 5.18534 5.30607 5.36265 5.51975 5.56717 5.68482 5.74780 5.82115 5.88743 6.17275 6.46027 6.51408 6.80580 7.20508 7.47567 7.91414 8.42348 9.24990 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021077 B = 0.002934 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.151876 B = 9540.810507 C = 9856.352751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.301 6.301 3 C 0.291 3.709 4 N -0.370 5.370 5 N -0.340 5.340 6 C 0.088 3.912 7 C 0.156 3.844 8 C -0.329 4.329 9 C 0.592 3.408 10 O -0.589 6.589 11 N -0.702 5.702 12 C 0.150 3.850 13 H 0.051 0.949 14 C -0.109 4.109 15 C -0.131 4.131 16 C 0.177 3.823 17 N -0.602 5.602 18 C -0.250 4.250 19 H 0.071 0.929 20 C -0.048 4.048 21 N -0.933 5.933 22 Si 0.959 3.041 23 H -0.269 1.269 24 H -0.295 1.295 25 H -0.291 1.291 26 C 0.167 3.833 27 H 0.042 0.958 28 C -0.128 4.128 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.131 0.869 34 H 0.095 0.905 35 H 0.241 0.759 36 H 0.411 0.589 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.040 0.960 41 H 0.054 0.946 42 H 0.007 0.993 43 H 0.248 0.752 44 H 0.050 0.950 45 H 0.078 0.922 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.023 15.907 -2.367 25.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.204 6.204 3 C 0.087 3.913 4 N -0.211 5.211 5 N -0.121 5.121 6 C -0.051 4.051 7 C 0.001 3.999 8 C -0.344 4.344 9 C 0.381 3.619 10 O -0.469 6.469 11 N -0.354 5.354 12 C 0.043 3.957 13 H 0.069 0.931 14 C -0.147 4.147 15 C -0.170 4.170 16 C 0.051 3.949 17 N -0.325 5.325 18 C -0.381 4.381 19 H 0.089 0.911 20 C -0.244 4.244 21 N -0.579 5.579 22 Si 0.788 3.212 23 H -0.194 1.194 24 H -0.222 1.222 25 H -0.218 1.218 26 C 0.060 3.940 27 H 0.059 0.941 28 C -0.186 4.186 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.136 0.864 32 H 0.115 0.885 33 H 0.149 0.851 34 H 0.114 0.886 35 H 0.257 0.743 36 H 0.248 0.752 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.025 0.975 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -21.178 15.458 -2.371 26.327 hybrid contribution 1.318 -0.974 0.523 1.720 sum -19.860 14.484 -1.849 24.650 Atomic orbital electron populations 1.23216 0.76054 1.05094 1.02316 1.86470 1.23768 1.21722 1.88407 1.20740 0.90848 0.85464 0.94276 1.77248 1.14460 0.94672 1.34727 1.48177 1.02695 1.07684 1.53495 1.22520 1.06320 0.70554 1.05682 1.23692 0.92858 0.90487 0.92856 1.19737 0.90875 0.94026 1.29793 1.17440 0.82184 0.87330 0.74994 1.90771 1.82979 1.20558 1.52634 1.45584 1.04125 1.10406 1.75248 1.21247 0.87430 0.90751 0.96246 0.93106 1.21681 0.97763 0.98782 0.96518 1.22038 0.96879 0.97814 1.00309 1.20631 0.93355 0.96123 0.84755 1.44288 1.37656 1.45627 1.04979 1.19484 0.92289 1.37356 0.88926 0.91095 1.25714 0.96738 1.02668 0.99252 1.70156 1.10175 1.49623 1.27971 0.85332 0.78277 0.77974 0.79643 1.19397 1.22170 1.21786 1.20727 0.86506 0.91052 0.95731 0.94076 1.21742 1.01107 1.00583 0.95133 0.92045 0.91955 0.86390 0.88530 0.85117 0.88624 0.74262 0.75155 0.91118 0.93257 0.91082 0.94141 0.92730 0.97474 0.94276 0.93068 0.90297 0.94635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.70 113.37 1.21 1.79 16 2 O -0.30 -9.43 9.99 -86.78 -0.87 -10.30 16 3 C 0.29 8.45 7.85 85.70 0.67 9.12 16 4 N -0.37 -8.71 11.90 -169.99 -2.02 -10.73 16 5 N -0.34 -4.99 3.97 -367.77 -1.46 -6.45 16 6 C 0.09 0.29 11.44 127.77 1.46 1.75 16 7 C 0.16 2.26 10.98 84.31 0.93 3.19 16 8 C -0.33 -8.67 6.14 -20.08 -0.12 -8.79 16 9 C 0.59 19.52 7.78 86.61 0.67 20.19 16 10 O -0.59 -25.73 16.09 1.03 0.02 -25.71 16 11 N -0.70 -19.61 4.58 -445.62 -2.04 -21.65 16 12 C 0.15 5.44 1.99 45.07 0.09 5.53 16 13 H 0.05 2.24 7.58 -2.39 -0.02 2.22 16 14 C -0.11 -3.92 5.46 30.62 0.17 -3.76 16 15 C -0.13 -5.29 6.08 30.67 0.19 -5.11 16 16 C 0.18 8.56 5.29 86.36 0.46 9.01 16 17 N -0.60 -29.52 2.99 -675.21 -2.02 -31.54 16 18 C -0.25 -13.47 8.60 84.03 0.72 -12.74 16 19 H 0.07 3.74 6.21 -2.91 -0.02 3.73 16 20 C -0.05 -2.68 4.96 84.86 0.42 -2.26 16 21 N -0.93 -54.39 11.14 21.65 0.24 -54.15 16 22 Si 0.96 45.06 29.58 68.60 2.03 47.09 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 C 0.17 6.45 3.03 44.98 0.14 6.59 16 27 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 28 C -0.13 -4.53 7.83 71.98 0.56 -3.97 16 29 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.24 0.76 7.46 -2.91 -0.02 0.74 16 36 H 0.41 7.80 7.52 -92.70 -0.70 7.10 16 37 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.05 3.01 6.06 -2.38 -0.01 3.00 16 42 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 44 H 0.05 1.92 7.62 -2.39 -0.02 1.91 16 45 H 0.08 2.11 7.80 -2.39 -0.02 2.10 16 46 H 0.03 1.38 7.45 -2.39 -0.02 1.36 16 Total: -1.00 -82.53 373.38 1.73 -80.80 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.29 Total: 12.12 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 7.57 Total: 20.54 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -7.30 Total: -124.53 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.85 Total: -36.01 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -82.53 1.73 -80.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993682119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.601 kcal (2) G-P(sol) polarization free energy of solvation -82.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds