Wall clock time and date at job start Tue Mar 31 2020 14:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35851 * 117.00161 * 2 1 4 4 N 1.30806 * 126.05733 * 0.14956 * 3 2 1 5 5 N 1.39919 * 108.88035 * 180.26020 * 4 3 2 6 6 C 1.46504 * 125.68952 * 179.72421 * 5 4 3 7 7 C 1.34165 * 108.62186 * 359.75149 * 5 4 3 8 8 C 1.38133 * 107.50680 * 359.97438 * 7 5 4 9 9 C 1.47247 * 126.44472 * 179.97438 * 8 7 5 10 10 O 1.21626 * 119.99950 * 180.02562 * 9 8 7 11 11 N 1.34774 * 120.00020 * 359.74928 * 9 8 7 12 12 C 1.46501 * 119.99655 * 180.27603 * 11 9 8 13 13 H 1.08998 * 109.50069 * 34.93520 * 12 11 9 14 14 C 1.53041 * 109.50127 * 274.83928 * 12 11 9 15 15 C 1.53049 * 109.53586 * 301.42106 * 14 12 11 16 16 C 1.53191 * 109.30973 * 298.62664 * 15 14 12 17 17 N 1.46929 * 108.77654 * 54.63951 * 16 15 14 18 18 C 1.36930 * 120.63289 * 126.40813 * 17 16 15 19 19 H 1.08004 * 119.99955 * 208.99162 * 18 17 16 20 20 C 1.38810 * 120.00076 * 28.99527 * 18 17 16 21 21 N 1.31620 * 119.99860 * 15.03543 * 20 18 17 22 22 Si 1.86793 * 120.00301 * 195.03496 * 20 18 17 23 23 H 1.48506 * 109.47306 * 89.99551 * 22 20 18 24 24 H 1.48500 * 109.47518 * 210.00113 * 22 20 18 25 25 H 1.48500 * 109.47326 * 329.99929 * 22 20 18 26 26 C 1.46932 * 118.73583 * 306.39119 * 17 16 15 27 27 H 1.08999 * 109.70287 * 293.74897 * 26 17 16 28 28 C 1.53001 * 109.58504 * 173.39129 * 26 17 16 29 29 H 1.08996 * 109.47251 * 59.99436 * 1 2 3 30 30 H 1.08998 * 109.47233 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46729 * 299.99698 * 1 2 3 32 32 H 1.08998 * 109.47159 * 270.02658 * 6 5 4 33 33 H 1.08997 * 109.47013 * 30.03080 * 6 5 4 34 34 H 1.09004 * 109.46962 * 150.02723 * 6 5 4 35 35 H 1.07997 * 126.24468 * 180.02562 * 7 5 4 36 36 H 0.96998 * 120.00214 * 0.28133 * 11 9 8 37 37 H 1.09004 * 109.45903 * 61.43346 * 14 12 11 38 38 H 1.08998 * 109.46570 * 181.39668 * 14 12 11 39 39 H 1.09000 * 109.49522 * 178.68019 * 15 14 12 40 40 H 1.08990 * 109.52870 * 58.59862 * 15 14 12 41 41 H 1.09002 * 109.58775 * 294.85236 * 16 15 14 42 42 H 1.09003 * 109.58880 * 174.42460 * 16 15 14 43 43 H 0.96996 * 119.99656 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.47532 * 300.71324 * 28 26 17 45 45 H 1.09004 * 109.46702 * 60.71384 * 28 26 17 46 46 H 1.09000 * 109.46930 * 180.70669 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2104 0.0000 4 7 1.4532 2.3765 0.0028 5 7 2.4283 3.3800 -0.0043 6 6 2.1705 4.8222 -0.0097 7 6 3.6387 2.8012 -0.0060 8 6 3.4453 1.4335 0.0005 9 6 4.4956 0.4015 0.0008 10 8 4.1912 -0.7760 0.0065 11 7 5.7943 0.7618 -0.0109 12 6 6.8392 -0.2650 -0.0167 13 1 6.5035 -1.1224 -0.6000 14 6 7.1302 -0.7060 1.4196 15 6 7.5696 0.5040 2.2474 16 6 8.8548 1.0862 1.6507 17 7 8.6261 1.3786 0.2291 18 6 8.8835 2.6246 -0.2771 19 1 8.3208 2.9905 -1.1233 20 6 9.8677 3.4173 0.2972 21 7 10.7465 2.8834 1.1187 22 14 9.9448 5.2418 -0.0959 23 1 9.1176 5.9942 0.8813 24 1 11.3528 5.7067 -0.0143 25 1 9.4253 5.4752 -1.4674 26 6 8.1162 0.3085 -0.6391 27 1 8.8642 -0.4791 -0.7295 28 6 7.8008 0.8779 -2.0237 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.1031 5.1754 -1.0386 33 1 1.2323 5.0254 0.5065 34 1 2.9845 5.3386 0.4992 35 1 4.5904 3.3115 -0.0107 36 1 6.0371 1.7009 -0.0154 37 1 6.2294 -1.1371 1.8566 38 1 7.9249 -1.4519 1.4166 39 1 7.7540 0.1935 3.2758 40 1 6.7855 1.2608 2.2310 41 1 9.6639 0.3625 1.7493 42 1 9.1176 2.0050 2.1750 43 1 11.4340 3.4375 1.5202 44 1 7.0565 1.6687 -1.9306 45 1 8.7106 1.2854 -2.4647 46 1 7.4110 0.0853 -2.6624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993682122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:37 Heat of formation + Delta-G solvation = 33.428948 kcal Electronic energy + Delta-G solvation = -28779.524822 eV Core-core repulsion = 24900.465478 eV Total energy + Delta-G solvation = -3879.059344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.47730 -39.28326 -38.27351 -37.27320 -33.81843 -32.96875 -32.36498 -31.72479 -30.46536 -29.06889 -27.97611 -26.49537 -25.96707 -24.99322 -22.98036 -21.80331 -20.95016 -20.71456 -20.05213 -18.61601 -17.89617 -16.87700 -16.39070 -16.30418 -15.74770 -15.22040 -15.09463 -15.06243 -14.66522 -14.48882 -13.94248 -13.80277 -13.37020 -13.17308 -13.05684 -12.88538 -12.72088 -12.65888 -12.47323 -12.00821 -11.82028 -11.27489 -11.24486 -11.18351 -10.99303 -10.88103 -10.72324 -10.56876 -10.48860 -10.10211 -9.97893 -9.61437 -9.37327 -9.26593 -9.17219 -8.57036 -8.51319 -8.24173 -6.68173 -5.82678 -3.27884 1.49931 2.11243 2.32444 3.20085 3.29651 3.36365 3.39504 3.85290 3.87666 4.31435 4.41926 4.67353 4.91218 4.99194 5.14936 5.16084 5.18113 5.31434 5.34633 5.40725 5.42767 5.58545 5.67141 5.73505 5.78915 5.83919 6.03717 6.17789 6.27844 6.41868 6.49616 6.60553 6.69266 6.73775 6.76030 6.84320 6.98728 7.01773 7.18259 7.24395 7.41281 7.56873 7.68044 7.75752 8.22694 8.40678 8.87351 9.16812 9.80202 10.38105 11.25000 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.004393 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.715524 B = 6372.872400 C = 7693.046290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.266 6.266 3 C 0.313 3.687 4 N -0.358 5.358 5 N -0.351 5.351 6 C 0.100 3.900 7 C 0.125 3.875 8 C -0.286 4.286 9 C 0.588 3.412 10 O -0.547 6.547 11 N -0.701 5.701 12 C 0.138 3.862 13 H 0.076 0.924 14 C -0.121 4.121 15 C -0.139 4.139 16 C 0.171 3.829 17 N -0.586 5.586 18 C -0.255 4.255 19 H 0.071 0.929 20 C 0.005 3.995 21 N -0.900 5.900 22 Si 0.899 3.101 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.159 3.841 27 H 0.039 0.961 28 C -0.135 4.135 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.193 0.807 36 H 0.403 0.597 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.017 0.983 42 H 0.087 0.913 43 H 0.253 0.747 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.663 1.681 -1.558 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.168 6.168 3 C 0.108 3.892 4 N -0.198 5.198 5 N -0.133 5.133 6 C -0.041 4.041 7 C -0.027 4.027 8 C -0.301 4.301 9 C 0.375 3.625 10 O -0.425 6.425 11 N -0.352 5.352 12 C 0.031 3.969 13 H 0.094 0.906 14 C -0.160 4.160 15 C -0.178 4.178 16 C 0.046 3.954 17 N -0.310 5.310 18 C -0.384 4.384 19 H 0.088 0.912 20 C -0.194 4.194 21 N -0.544 5.544 22 Si 0.729 3.271 23 H -0.216 1.216 24 H -0.219 1.219 25 H -0.205 1.205 26 C 0.052 3.948 27 H 0.056 0.944 28 C -0.192 4.192 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.210 0.790 36 H 0.239 0.761 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.035 0.965 42 H 0.105 0.895 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -16.775 1.314 -1.487 16.892 hybrid contribution 0.817 1.248 -0.051 1.492 sum -15.958 2.562 -1.538 16.236 Atomic orbital electron populations 1.22998 0.78148 1.03568 1.01785 1.86524 1.21402 1.20536 1.88358 1.20404 0.90194 0.85117 0.93494 1.77242 1.13355 0.94630 1.34554 1.47638 1.03183 1.06391 1.56051 1.22003 1.04496 0.73652 1.03900 1.23217 0.91276 0.92336 0.95847 1.19831 0.91871 0.92727 1.25685 1.17072 0.81782 0.87304 0.76382 1.90755 1.82464 1.18026 1.51303 1.45782 1.04372 1.10924 1.74167 1.21475 0.88418 0.90411 0.96574 0.90597 1.21774 1.00188 0.98147 0.95892 1.22129 1.00999 0.97133 0.97586 1.20814 0.90811 0.99585 0.84225 1.44170 1.76017 1.07395 1.03433 1.19169 1.13618 0.90582 1.15039 0.91167 1.25092 0.95364 0.98608 1.00333 1.70019 1.16314 1.34122 1.33898 0.86353 0.76962 0.85811 0.77960 1.21580 1.21864 1.20489 1.20732 0.91615 0.91996 0.90472 0.94352 1.21776 1.01617 0.99872 0.95972 0.92644 0.88185 0.92632 0.90239 0.89041 0.88655 0.79023 0.76120 0.93039 0.92073 0.93608 0.92877 0.96500 0.89500 0.93663 0.92836 0.91937 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.70 101.05 1.08 1.42 16 2 O -0.27 -4.29 9.99 -24.63 -0.25 -4.54 16 3 C 0.31 5.06 7.85 -16.66 -0.13 4.93 16 4 N -0.36 -5.10 11.90 30.79 0.37 -4.73 16 5 N -0.35 -4.07 3.97 -67.60 -0.27 -4.34 16 6 C 0.10 0.66 11.44 59.85 0.68 1.34 16 7 C 0.13 1.56 10.98 -16.57 -0.18 1.37 16 8 C -0.29 -4.58 6.14 -104.95 -0.64 -5.22 16 9 C 0.59 10.74 7.78 -12.60 -0.10 10.64 16 10 O -0.55 -11.77 16.09 -0.10 0.00 -11.77 16 11 N -0.70 -12.05 3.45 -54.82 -0.19 -12.24 16 12 C 0.14 2.50 2.33 -67.81 -0.16 2.34 16 13 H 0.08 1.41 7.58 -51.93 -0.39 1.02 16 14 C -0.12 -2.21 5.58 -26.68 -0.15 -2.36 16 15 C -0.14 -2.65 5.93 -26.61 -0.16 -2.80 16 16 C 0.17 3.84 5.29 -3.71 -0.02 3.82 16 17 N -0.59 -13.13 2.65 -164.77 -0.44 -13.56 16 18 C -0.25 -6.14 8.61 -15.06 -0.13 -6.27 16 19 H 0.07 1.62 6.20 -52.48 -0.33 1.30 16 20 C 0.01 0.13 4.96 -17.43 -0.09 0.04 16 21 N -0.90 -24.56 11.14 55.49 0.62 -23.94 16 22 Si 0.90 19.96 29.58 -169.99 -5.03 14.94 16 23 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 C 0.16 3.11 3.20 -67.59 -0.22 2.89 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 C -0.13 -2.41 7.72 37.16 0.29 -2.12 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.19 1.86 7.46 -52.49 -0.39 1.46 16 36 H 0.40 6.70 6.69 -40.82 -0.27 6.43 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 1.02 7.53 -51.93 -0.39 0.62 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 2.18 6.06 -51.93 -0.31 1.87 16 43 H 0.25 6.77 8.31 -40.82 -0.34 6.44 16 44 H 0.05 0.93 6.38 -51.93 -0.33 0.60 16 45 H 0.06 1.19 7.66 -51.93 -0.40 0.79 16 46 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 370.14 15.07 5.58 5.58 Total: -1.00 -32.46 370.14 -6.55 -39.02 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -7.03 Total: 5.57 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 0.08 Total: 10.04 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.09 Total: -58.82 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.25 Total: -16.31 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.46 -6.55 -39.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993682122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.445 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds