Wall clock time and date at job start Tue Mar 31 2020 14:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35851 * 117.00161 * 2 1 4 4 N 1.30806 * 126.05733 * 0.14956 * 3 2 1 5 5 N 1.39919 * 108.88035 * 180.26020 * 4 3 2 6 6 C 1.46504 * 125.68952 * 179.72421 * 5 4 3 7 7 C 1.34165 * 108.62186 * 359.75149 * 5 4 3 8 8 C 1.38133 * 107.50680 * 359.97438 * 7 5 4 9 9 C 1.47247 * 126.44472 * 179.97438 * 8 7 5 10 10 O 1.21626 * 119.99950 * 180.02562 * 9 8 7 11 11 N 1.34774 * 120.00020 * 359.74928 * 9 8 7 12 12 C 1.46501 * 119.99655 * 180.27603 * 11 9 8 13 13 H 1.08998 * 109.50069 * 34.93520 * 12 11 9 14 14 C 1.53041 * 109.50127 * 274.83928 * 12 11 9 15 15 C 1.53049 * 109.53586 * 301.42106 * 14 12 11 16 16 C 1.53191 * 109.30973 * 298.62664 * 15 14 12 17 17 N 1.46929 * 108.77654 * 54.63951 * 16 15 14 18 18 C 1.36930 * 120.63289 * 126.40813 * 17 16 15 19 19 H 1.08004 * 119.99955 * 208.99162 * 18 17 16 20 20 C 1.38810 * 120.00076 * 28.99527 * 18 17 16 21 21 N 1.31620 * 119.99860 * 15.03543 * 20 18 17 22 22 Si 1.86793 * 120.00301 * 195.03496 * 20 18 17 23 23 H 1.48506 * 109.47306 * 89.99551 * 22 20 18 24 24 H 1.48500 * 109.47518 * 210.00113 * 22 20 18 25 25 H 1.48500 * 109.47326 * 329.99929 * 22 20 18 26 26 C 1.46932 * 118.73583 * 306.39119 * 17 16 15 27 27 H 1.08999 * 109.70287 * 293.74897 * 26 17 16 28 28 C 1.53001 * 109.58504 * 173.39129 * 26 17 16 29 29 H 1.08996 * 109.47251 * 59.99436 * 1 2 3 30 30 H 1.08998 * 109.47233 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46729 * 299.99698 * 1 2 3 32 32 H 1.08998 * 109.47159 * 270.02658 * 6 5 4 33 33 H 1.08997 * 109.47013 * 30.03080 * 6 5 4 34 34 H 1.09004 * 109.46962 * 150.02723 * 6 5 4 35 35 H 1.07997 * 126.24468 * 180.02562 * 7 5 4 36 36 H 0.96998 * 120.00214 * 0.28133 * 11 9 8 37 37 H 1.09004 * 109.45903 * 61.43346 * 14 12 11 38 38 H 1.08998 * 109.46570 * 181.39668 * 14 12 11 39 39 H 1.09000 * 109.49522 * 178.68019 * 15 14 12 40 40 H 1.08990 * 109.52870 * 58.59862 * 15 14 12 41 41 H 1.09002 * 109.58775 * 294.85236 * 16 15 14 42 42 H 1.09003 * 109.58880 * 174.42460 * 16 15 14 43 43 H 0.96996 * 119.99656 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.47532 * 300.71324 * 28 26 17 45 45 H 1.09004 * 109.46702 * 60.71384 * 28 26 17 46 46 H 1.09000 * 109.46930 * 180.70669 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2104 0.0000 4 7 1.4532 2.3765 0.0028 5 7 2.4283 3.3800 -0.0043 6 6 2.1705 4.8222 -0.0097 7 6 3.6387 2.8012 -0.0060 8 6 3.4453 1.4335 0.0005 9 6 4.4956 0.4015 0.0008 10 8 4.1912 -0.7760 0.0065 11 7 5.7943 0.7618 -0.0109 12 6 6.8392 -0.2650 -0.0167 13 1 6.5035 -1.1224 -0.6000 14 6 7.1302 -0.7060 1.4196 15 6 7.5696 0.5040 2.2474 16 6 8.8548 1.0862 1.6507 17 7 8.6261 1.3786 0.2291 18 6 8.8835 2.6246 -0.2771 19 1 8.3208 2.9905 -1.1233 20 6 9.8677 3.4173 0.2972 21 7 10.7465 2.8834 1.1187 22 14 9.9448 5.2418 -0.0959 23 1 9.1176 5.9942 0.8813 24 1 11.3528 5.7067 -0.0143 25 1 9.4253 5.4752 -1.4674 26 6 8.1162 0.3085 -0.6391 27 1 8.8642 -0.4791 -0.7295 28 6 7.8008 0.8779 -2.0237 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.1031 5.1754 -1.0386 33 1 1.2323 5.0254 0.5065 34 1 2.9845 5.3386 0.4992 35 1 4.5904 3.3115 -0.0107 36 1 6.0371 1.7009 -0.0154 37 1 6.2294 -1.1371 1.8566 38 1 7.9249 -1.4519 1.4166 39 1 7.7540 0.1935 3.2758 40 1 6.7855 1.2608 2.2310 41 1 9.6639 0.3625 1.7493 42 1 9.1176 2.0050 2.1750 43 1 11.4340 3.4375 1.5202 44 1 7.0565 1.6687 -1.9306 45 1 8.7106 1.2854 -2.4647 46 1 7.4110 0.0853 -2.6624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993682122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:36 Heat of formation + Delta-G solvation = 10.765691 kcal Electronic energy + Delta-G solvation = -28780.507574 eV Core-core repulsion = 24900.465478 eV Total energy + Delta-G solvation = -3880.042096 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.51190 -40.75739 -39.30960 -38.83563 -35.49024 -34.03849 -33.76551 -33.33579 -31.80817 -30.54409 -28.81200 -27.88391 -27.06321 -26.72650 -24.29026 -23.31017 -22.29753 -21.97151 -21.35365 -20.16400 -19.07539 -18.16649 -17.96088 -17.32375 -17.06908 -16.69588 -16.27782 -16.03823 -15.95191 -15.81081 -15.59427 -15.19832 -14.89141 -14.57498 -14.53223 -14.18912 -13.89386 -13.53062 -13.47613 -13.44587 -12.90614 -12.83873 -12.80734 -12.63209 -12.39544 -12.25794 -12.14268 -12.11237 -11.91967 -11.84291 -11.60761 -11.29119 -10.97291 -10.80268 -10.42280 -10.22052 -9.86143 -9.44384 -8.54664 -7.73680 -5.20681 0.49563 1.15306 1.27010 1.55968 1.58223 1.65733 2.22164 2.53553 2.56238 2.61398 3.41886 3.42777 3.66119 3.80886 4.05435 4.15344 4.26614 4.28142 4.32295 4.34082 4.39509 4.46545 4.49118 4.57012 4.62780 4.65929 4.73397 4.74905 4.77353 4.88256 5.02339 5.05848 5.12353 5.20622 5.30350 5.41548 5.52186 5.62846 5.75352 5.82065 5.84540 5.88880 6.17211 6.51142 6.52029 6.86914 7.26442 7.50210 7.96614 8.51243 9.33116 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.004393 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.715524 B = 6372.872400 C = 7693.046290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.297 6.297 3 C 0.295 3.705 4 N -0.366 5.366 5 N -0.340 5.340 6 C 0.087 3.913 7 C 0.148 3.852 8 C -0.325 4.325 9 C 0.591 3.409 10 O -0.587 6.587 11 N -0.693 5.693 12 C 0.146 3.854 13 H 0.074 0.926 14 C -0.116 4.116 15 C -0.125 4.125 16 C 0.181 3.819 17 N -0.595 5.595 18 C -0.244 4.244 19 H 0.086 0.914 20 C -0.051 4.051 21 N -0.939 5.939 22 Si 0.961 3.039 23 H -0.283 1.283 24 H -0.311 1.311 25 H -0.264 1.264 26 C 0.158 3.842 27 H 0.029 0.971 28 C -0.127 4.127 29 H 0.061 0.939 30 H 0.121 0.879 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.223 0.777 36 H 0.407 0.593 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.055 0.945 41 H -0.009 1.009 42 H 0.059 0.941 43 H 0.244 0.756 44 H 0.060 0.940 45 H 0.048 0.952 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.335 3.480 -2.337 17.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.200 6.200 3 C 0.090 3.910 4 N -0.207 5.207 5 N -0.121 5.121 6 C -0.051 4.051 7 C -0.007 4.007 8 C -0.341 4.341 9 C 0.379 3.621 10 O -0.469 6.469 11 N -0.344 5.344 12 C 0.040 3.960 13 H 0.092 0.908 14 C -0.155 4.155 15 C -0.164 4.164 16 C 0.055 3.945 17 N -0.319 5.319 18 C -0.374 4.374 19 H 0.103 0.897 20 C -0.246 4.246 21 N -0.586 5.586 22 Si 0.790 3.210 23 H -0.210 1.210 24 H -0.238 1.238 25 H -0.189 1.189 26 C 0.051 3.949 27 H 0.046 0.954 28 C -0.184 4.184 29 H 0.080 0.920 30 H 0.139 0.861 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.141 0.859 35 H 0.239 0.761 36 H 0.244 0.756 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.009 0.991 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.505 3.145 -2.289 18.909 hybrid contribution 1.278 0.710 0.166 1.472 sum -17.226 3.855 -2.123 17.780 Atomic orbital electron populations 1.23232 0.76022 1.05208 1.02275 1.86463 1.23752 1.21299 1.88447 1.20637 0.90542 0.85537 0.94274 1.77208 1.14199 0.94625 1.34628 1.48132 1.02526 1.07674 1.53726 1.22497 1.06168 0.70744 1.05703 1.23543 0.92515 0.91163 0.93472 1.19778 0.91351 0.93779 1.29161 1.17352 0.82142 0.87270 0.75295 1.90723 1.83011 1.19842 1.53316 1.45641 1.03951 1.10762 1.73996 1.21267 0.87934 0.90547 0.96295 0.90781 1.21721 1.00143 0.97811 0.95797 1.21944 0.99011 0.97267 0.98144 1.20578 0.91679 0.97674 0.84592 1.44350 1.75857 1.07861 1.03808 1.19557 1.12556 0.90925 1.14398 0.89675 1.25800 0.95535 1.02274 1.00981 1.70194 1.17365 1.35143 1.35849 0.85362 0.75762 0.81394 0.78470 1.21005 1.23837 1.18858 1.20819 0.91771 0.91083 0.91194 0.95373 1.21698 1.01194 1.00652 0.94904 0.92046 0.86067 0.92138 0.88392 0.88151 0.85946 0.76077 0.75590 0.93164 0.91709 0.92353 0.92644 0.99063 0.92237 0.94634 0.92062 0.93268 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.70 113.37 1.21 1.79 16 2 O -0.30 -9.57 9.99 -86.75 -0.87 -10.44 16 3 C 0.29 9.32 7.85 85.70 0.67 9.99 16 4 N -0.37 -9.81 11.90 -170.00 -2.02 -11.83 16 5 N -0.34 -6.86 3.97 -367.77 -1.46 -8.32 16 6 C 0.09 0.80 11.44 127.77 1.46 2.26 16 7 C 0.15 3.24 10.98 84.31 0.93 4.17 16 8 C -0.33 -10.02 6.14 -20.08 -0.12 -10.14 16 9 C 0.59 21.12 7.78 86.61 0.67 21.79 16 10 O -0.59 -25.36 16.09 1.01 0.02 -25.34 16 11 N -0.69 -22.79 3.45 -445.59 -1.54 -24.33 16 12 C 0.15 5.17 2.33 45.07 0.10 5.28 16 13 H 0.07 2.70 7.58 -2.39 -0.02 2.68 16 14 C -0.12 -4.14 5.58 30.62 0.17 -3.96 16 15 C -0.12 -4.64 5.93 30.67 0.18 -4.46 16 16 C 0.18 8.17 5.29 86.36 0.46 8.63 16 17 N -0.59 -26.29 2.65 -675.20 -1.79 -28.08 16 18 C -0.24 -11.48 8.61 84.03 0.72 -10.76 16 19 H 0.09 3.71 6.20 -2.91 -0.02 3.69 16 20 C -0.05 -2.56 4.96 84.86 0.42 -2.14 16 21 N -0.94 -52.18 11.14 21.65 0.24 -51.94 16 22 Si 0.96 40.44 29.58 68.60 2.03 42.47 16 23 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.31 -13.94 7.11 99.48 0.71 -13.24 16 25 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 26 C 0.16 6.03 3.20 44.98 0.14 6.17 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 C -0.13 -4.29 7.72 71.98 0.56 -3.74 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.78 16 34 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.22 3.36 7.46 -2.91 -0.02 3.34 16 36 H 0.41 12.62 6.69 -92.71 -0.62 12.00 16 37 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 2.04 7.53 -2.39 -0.02 2.02 16 41 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 16 42 H 0.06 3.04 6.06 -2.39 -0.01 3.03 16 43 H 0.24 13.44 8.31 -92.71 -0.77 12.67 16 44 H 0.06 1.96 6.38 -2.39 -0.02 1.95 16 45 H 0.05 1.79 7.66 -2.38 -0.02 1.77 16 46 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -71.43 370.14 2.56 -68.87 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.37 Total: 24.07 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: 7.58 Total: 24.86 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -6.57 Total: -124.49 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.85 Total: -35.78 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -71.43 2.56 -68.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993682122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.634 kcal (2) G-P(sol) polarization free energy of solvation -71.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds